Biochemistry

Article	Citations
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Structure–Function Analysis of Streptomyces griseolus CYP105A1 in the Metabolism of Nonsteroidal Anti-inflammatory Drugs	75
Cysimiditides: RiPPs with a Zn-Tetracysteine Motif and Aspartimidylation	73
The Thermal-Stable LH1–RC Complex of a Hot Spring Purple Bacterium Powers Photosynthesis with Extremely Low-Energy Near-Infrared Light	70
Elucidating the Mechanism of Recognition and Binding of Heparin to Amyloid Fibrils of Serum Amyloid A	69
Effects of Ca2+ on the Structure and Dynamics of PIP3 in Model Membranes Containing PC and PS	68
Presenilin, γ-Secretase, and the Search for Pathogenic Triggers of Alzheimer’s Disease	60
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Regulation of GLP-1 and Glucagon Receptor Function by β-Arrestins in Metabolically Important Cell Types	50
Protein and DNA Conformational Changes Contribute to Specificity of Cre Recombinase	47
Structure of the CD33 Receptor and Implications for the Siglec Family	45
Axial Heme Coordination by the Tyr-His Motif in the Extracellular Hemophore HasAp Is Critical for the Release of Heme to the HasR Receptor of Pseudomonas aeruginosa	43
Parameterizing the Binding Properties of XNA Aptamers Isolated from a Low Stringency Selection	40
An Unusual Ferryl Intermediate and Its Implications for the Mechanism of Oxacyclization by the Loline-Producing Iron(II)- and 2-Oxoglutarate-Dependent Oxygenase, LolO	39
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Bacterial Responses to Iron Withholding by Calprotectin	38
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Identification and Characterization of the 28-N-Methyltransferase Involved in HSAF Analogue Biosynthesis	36

CG17192 is a Phospholipase That Regulates Signaling Lipids in the Drosophila Gut upon Infection	35
A Specific pSer/Thr-Pro Motif Generates Interdomain Communication Bifurcations of Two Modes of Pin1 in Solution Nuclear Magnetic Resonance	35
A High-Throughput Screening Pipeline to Identify Methyltransferase and Exonuclease Inhibitors of SARS-CoV-2 NSP14	34
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Computational Approaches for Development of Engineered Therapeutics against SARS-CoV-2	27
Introduction to the Protein Condensates Virtual Special Issue	27
A Single DNA Point Mutation Leads to the Formation of a Cysteine–Tyrosine Crosslink in the Cysteine Dioxygenase from Bacillus subtilis	26
Targeting Scaffolding Functions of Enzymes Using PROTAC Approaches	26
Contrasting Mechanisms of Aromatic and Aryl-Methyl Substituent Hydroxylation by the Rieske Monooxygenase Salicylate 5-Hydroxylase	26
Initial Steps in Methanobactin Biosynthesis: Substrate Binding by the Mixed-Valent Diiron Enzyme MbnBC	26
Genome-Wide Analysis of Stable RNA Secondary Structures across Multiple Organisms Using Chemical Probing Data: Insights into Short Structural Motifs and RNA-Targeting Therapeutics	25
Computational and Experimental Exploration of Protein Fitness Landscapes: Navigating Smooth and Rugged Terrains	25
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Fragment-Based Discovery of Novel VE-PTP Inhibitors Using Orthogonal Biophysical Techniques	23
Assembling a Robust Workflow for Characterizing Endogenous E3 Ligase Substrates	23
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Molecular Insights into the Inhibition of Dialysis-Related β2m Amyloidosis Orchestrated by a Bispidine Peptidomimetic Analogue	22
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Distinguishing Different Hydrogen-Bonded Helices in Proteins by Efficient 1H-Detected Three-Dimensional Solid-State NMR	21
The Salmonella Effector SspH2 Facilitates Spatially Selective Ubiquitination of NOD1 to Enhance Inflammatory Signaling	20
Molecular Glues: A New Approach to Modulating GPCR Signaling Bias	20
Small Changes Make the Difference for SIRT2: Two Different Binding Modes for 3-Arylmercapto-Acylated Lysine Derivatives	20
PLP-Dependent Enzyme Methionine γ-Lyase: Insights into the Michaelis Complex from Molecular Dynamics and Free Energy Simulations	20
The Huntingtin Transport Complex	20
The Long Road to a Synthetic Self-Replicating Central Dogma	20
Issue Editorial Masthead	20
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Novel Mechanisms of Molecular Glue-Induced Protein Degradation	19
Design of Mimetic Antibodies Targeting the SARS-CoV-2 Spike Glycoprotein Based on the GB1 Domain: A Molecular Simulation and Experimental Study	19

Electrocatalytic Nitrite Reduction by a Monomeric NrfA: Commonality in Ammonification Mechanisms	18
Two-Component System Sensor Kinase Inhibitors Target the ATP-Lid of PmrB to Disrupt Colistin Resistance in Acinetobacter baumannii	18
Fine-Tuning of ATF4 DNA Binding Activity by a Secondary Basic Motif Unique to the ATF-X Subfamily of bZip Transcription Factors	18
Mechanism of Annealing of Complementary DNA Strands by the Single-Stranded DNA Binding Protein of Bacteriophage T7	18
A Major Disease-Related Point Mutation in Spastin Dramatically Alters the Dynamics and Allostery of the Motor	18
Cardiolipin Regulates the Activity of the Mitochondrial ABC Transporter ABCB10	17
Issue Publication Information	17
Elucidation of Short Linear Motif-Based Interactions of the FERM Domains of Ezrin, Radixin, Moesin, and Merlin	17
Putative Pore Structures of Amyloid β 25–35 in Lipid Bilayers	17
Development of Peptide Displacement Assays to Screen for Antagonists of DDB1 Interactions	17
Determining the Sequence Dependency of Self-Assembly of Elastin-Like Peptides Using Short Peptide Analogues with Shuffled Repetitive Sequences	17
Charge, Hydrophobicity, and Lipid Type Drive Antimicrobial Peptides’ Unique Perturbation Ensembles	17
AmorProt: Amino Acid Molecular Fingerprints Repurposing-Based Protein Fingerprint	16
RNA Post-transcriptional Modifications of an Early-Stage Large-Subunit Ribosomal Intermediate	16
Conformational Morphing by a DNA Analogue Featuring 7-Deazapurines and 5-Halogenpyrimidines and the Origins of Adenine-Tract Geometry	16
Structure-Guided Discovery of N5-CAIR Mutase Inhibitors	16
Electrostatic Interactions Dictate Bile Salt Hydrolase Substrate Preference	16
Characterization of a FourU RNA Thermometer in the 5′ Untranslated Region of Autolysin Gene blyA in the Bacillus subtilis 168 Prophage SPβ	16
Heme Pocket Structure and Its Functional Implications in an Ancestral Globin Protein	16
Oligomeric Changes Regulate Flavin Transfer in Two-Component FMN Reductases Involved in Sulfur Metabolism	16
Observation of pH-Dependent Residual Structure in the Pmel17 Repeat Domain and the Implication for Its Amyloid Formation	16
Decreased Transition-State Analogue Affinity in Isotopically Heavy MTAN with Increased Catalysis	16
Characterization of the Membrane-Associated Electron-Bifurcating Flavoenzyme EtfABCX from the Hyperthermophilic Bacterium Thermotoga maritima	15
BRD4354 Is a Potent Covalent Inhibitor against the SARS-CoV-2 Main Protease	15
Probing the Diacylglycerol Binding Site of Presynaptic Munc13-1	15
Correction to “β-Hairpin Alignment Alters Oligomer Formation in Aβ-Derived Peptides”	15
Discrete Acyltransferases and Thioesterases in Iso-Migrastatin and Lactimidomycin Biosynthesis	15
Structure-Based Engineering of a Sesquiterpene Cyclase to Generate an Alcohol Product: Conversion of epi-Isozizaene Synthase into α-Bisabolol Synthase	15
A Stutter in the Coiled-Coil Domain of Escherichia coli Co-chaperone GrpE Connects Structure with Function	15
Structural Characterization of 5-Substituted Pyrrolo[3,2-d]pyrimidine Antifolate Inhibitors in Complex with Human Serine Hydroxymethyl Transferase 2	15
Annexins A1 and A2 Accumulate and Are Immobilized at Cross-Linked Membrane–Membrane Interfaces	15
The Impact of Second-Shell Nucleotides on Ligand Specificity in Cyclic Dinucleotide Riboswitches	15
A Complete Survey of RhoGDI Targets Reveals Novel Interactions with Atypical Small GTPases	14
Distinguishing Concerted versus Stepwise Mechanisms Using Isotope Effects on Isotope Effects	14
N-Terminal Extensions Appear to Frustrate HU Heterodimer Formation by Strengthening Intersubunit Contacts and Blocking the Formation of a Heterotetrameric Intermediate	14
Structural Insights of a cis-Epoxysuccinate Hydrolase Facilitate the Development of Robust Biocatalysts for the Production of l-(+)-Tartrate	14
Active-Site Oxygen Accessibility and Catalytic Loop Dynamics of Plant Aromatic Amino Acid Decarboxylases from Molecular Simulations	14
Inhibitory Effects, Fluorescence Studies, and Molecular Docking Analysis of Some Novel Pyridine-Based Compounds on Mushroom Tyrosinase	14
Correlated Motions in Structural Biology	14
Lipid-Binding Regions within PKC-Related Serine/Threonine Protein Kinase N1 (PKN1) Required for Its Regulation	14
Modifying the Basicity of the dNTP Leaving Group Modulates Precatalytic Conformational Changes of DNA Polymerase β	14
Structural Basis for the Interactions of the Colibactin Resistance Gene Product ClbS with DNA	14
Biochemical, Bioinformatic, and Structural Comparisons of Transketolases and Position of Human Transketolase in the Enzyme Evolution	14
Anticancer Drugs of Lysine Specific Histone Demethylase-1 (LSD1) Display Variable Inhibition on Nucleosome Substrates	14
Structural Dynamics of Cytochrome P450 3A4 in the Presence of Substrates and Cytochrome P450 Reductase	14
Unraveling the Structure-Spectrum Relationship of Yeast Phenylalanine Transfer RNA: Insights from Theoretical Modeling of Infrared Spectroscopy	14
Cryo-EM Structure of the Human Amylin 1 Receptor in Complex with CGRP and Gs Protein	14
Exploring the Conformational Landscape of a Lanthipeptide Synthetase Using Native Mass Spectrometry	14
Isolation and Partial Characterization of Novel, Structurally Uniform (Hfq6)n≥8 Assemblies Carrying Accessory Transcription and Translation Factors	14
EPR Spin-Trapping for Monitoring Temporal Dynamics of Singlet Oxygen during Photoprotection in Photosynthesis	14
Elucidating the Role of Human ALAS2 C-terminal Mutations Resulting in Loss of Function and Disease	14
Probing the Catalytic Mechanism and Inhibition of SAMHD1 Using the Differential Properties of Rp- and Sp-dNTPαS Diastereomers	14
Structurally Based Design of Glucagon Mutants That Inhibit Fibril Formation	14
Poly-GR Impairs PRMT1-Mediated Arginine Methylation of Disease-Linked RNA-Binding Proteins by Acting as a Substrate Sink	14
Delivery Aspects for Implementing siRNA Therapeutics for Blood Diseases	13
The Structure of Carbamoylphosphate Synthetase Unravels Central Functional Features of a Key Metabolic Multienzyme Complex	13
From the Three-Dimensional Structure of Phosphotriesterase	13
Cryo-EM Structure of the Photosynthetic LH1-RC Complex from Rhodospirillum rubrum	13
Conformation-Dependent Hydrogen-Bonding Interactions in a Switchable Artificial Metalloprotein	13
Substrate Specificity of a Methyltransferase Involved in the Biosynthesis of the Lantibiotic Cacaoidin	13
Induction of Paraptotic Cell Death in Cancer Cells by Triptycene–Peptide Hybrids and the Revised Mechanism of Paraptosis II	13
Epoxyqueuosine Reductase QueH in the Biosynthetic Pathway to tRNA Queuosine Is a Unique Metalloenzyme	12
Phase Separation in Cell Polarity	12
A Streamlined Data Analysis Pipeline for the Identification of Sites of Citrullination	12
Inactivation of CYP2D6 by Berberrubine and the Chemical Mechanism	12
Site-Specific Steric Control of SARS-CoV-2 Spike Glycosylation	12
Factor XIII Activation Peptide Residues Play Important Roles in Stability, Activation, and Transglutaminase Activity	12
Peptide-Dependent Growth in Yeast via Fine-Tuned Peptide/GPCR-Activated Essential Gene Expression	12
Common Pitfalls and Recommendations for Using a Turbidity Assay to Study Protein Phase Separation	12
Differential Interactions of Selected Phytocannabinoids with Human CYP2D6 Polymorphisms	12
Photosynthetic Growth and Energy Conversion in an Engineered Phototroph Containing Thermochromatium tepidum Light-Harvesting Complex 1 and the Rhodobacter sphaeroides Reaction Center Com	12
Beyond the Plateau: pL Dependence of Proton Inventories as a Tool for Studying Ribozyme and Ribonuclease Catalysis	12
Molecular Characterization of Ancient Prosaposin-like Proteins from the Protist Dictyostelium discoideum	12
How Salt and Temperature Drive Reentrant Condensation of Aβ40	12
Complex Formation of Heme Oxygenase-2 with Heme Is Competitively Inhibited by the Cytosolic Domain of Caveolin-1	12
How to Kinetically Dissect an RNA Machine	12
VPS26 Moonlights as a β-Arrestin-like Adapter for a 7-Transmembrane RGS Protein in Arabidopsis thaliana	12
Mechanism of Catalysis and Substrate Binding of Epoxyqueuosine Reductase in the Biosynthetic Pathway to Queuosine-Modified tRNA	12
Characterization of a Nitro-Forming Enzyme Involved in Fosfazinomycin Biosynthesis	12
Molecular Insights into Conformational Heterogeneity and Enhanced Structural Integrity of Helicobacter pylori DNA Binding Protein Hup at Low pH	11

Natural and Synthetic Suppressor Mutations Defy Stability–Activity Tradeoffs	11
Structural Insights into Molecular Recognition by Human Chemokine CCL19	11
X-ray Crystal Structures of Methane Monooxygenase Hydroxylase Complexes with Variants of Its Regulatory Component: Correlations with Altered Reaction Cycle Dynamics	11
Resolving the Hydride Transfer Pathway in Oxidative Conversion of Proline to Pyrrole	11
Discovery of an Allosteric, Inactive Conformation-Selective Inhibitor of Full-Length HPK1 Utilizing a Kinase Cascade Assay	11
Protein Engineering in Ribosomally Synthesized and Post-translationally Modified Peptides (RiPPs)	11
Insights into Binding of Single-Stranded Viral RNA Template to the Replication–Transcription Complex of SARS-CoV-2 for the Priming Reaction from Molecular Dynamics Simulations	11
Evidence for Proline Catabolic Enzymes in the Metabolism of Thiazolidine Carboxylates	11
High-Throughput Algorithmic Optimization of In Vitro Transcription for SARS-CoV-2 mRNA Vaccine Production	11
Glycerol 3-Phosphate Dehydrogenase Catalyzed Hydride Transfer: Enzyme Activation by Cofactor Pieces	11
Designed Trp-Cage Proteins with Antimicrobial Activity and Enhanced Stability	11
Effects of Familial Alzheimer’s Disease Mutations on the Assembly of a β-Hairpin Peptide Derived from Aβ16–36	11
Multiple Domains of Staphylococcal Superantigen-like Protein 11 (SSL11) Contribute to Neutrophil Inhibition	11
Effects of Stromal and Lumenal Side Perturbations on the Redox Potential of the Primary Quinone Electron Acceptor QA in Photosystem II	11
Accumulation and Pulse Electron Paramagnetic Resonance Spectroscopic Investigation of the 4-Oxidobenzyl Radical Generated in the RadicalS-Adenosyl-l-methionine Enzyme HydG	11
Structure and Mechanism of a Cold-Adapted Bacterial Lipase	10
Structural and Thermodynamic Model for the Activation of Cardiac Troponin	10
Metal Dependence and Functional Diversity of Type I Cas3 Nucleases	10
p62 Phase-Separation as the Foundation of Autophagy-Based Degraders	10
Advancing the Biosynthetic and Chemical Understanding of the Carcinogenic Risk Factor Colibactin and Its Producers	10
Structure and Dynamics of the Flexible Cardiac Troponin T Linker Domain in a Fully Reconstituted Thin Filament	10
Genome Engineering for Next-Generation Cellular Immunotherapies	10
A Closed Form Model for Molecular Ratchet-Type Chemically Induced Dimerization Modules	10
Kinetic, Inhibition, and Structural Characterization of a Malonate Semialdehyde Decarboxylase-like Protein from Calothrix sp. PCC 6303: A Gateway to the non-Pro1 Tautomerase Superfamily Members	10
Metabolic Processing of Selenium-Based Bioisosteres of meso-Diaminopimelic Acid in Live Bacteria	10
Signal Transmission in Escherichia coli Cyclic AMP Receptor Protein for Survival in Extreme Acidic Conditions	10
NMR Structures of Calmodulin Bound to Two Separate Regulatory Sites in the Retinal Cyclic Nucleotide-Gated Channel	10
Structure-Guided Insight into the Specificity and Mechanism of a Parasitic Nucleoside Hydrolase	10
Modification of the 4Fe-4S Cluster Charge Transport Pathway Alters RNA Synthesis by Yeast DNA Primase	10
Conditional Alternative Protein Splicing Promoted by Inteins from Haloquadratum walsbyi	10
Hysteresis in Hepatitis B Virus (HBV) Requires Assembly of Near-Perfect Capsids	10
Cysteine Dealkylation in Bacillus subtilis by a Novel Flavin-Dependent Monooxygenase	10
Interaction of the Influenza A Virus NS1 Protein with the 5′-m7G-mRNA·eIF4E·eIF4G1 Complex	10
Engineering a Red Fluorescent Protein Chromophore for Visualization of RNA G-Quadruplexes	9
A Novel Gene Alignment in Dorea sp. AM58-8 Produces 7-Dehydroxy-3β Bile Acids from Primary Bile Acids	9
Discovery and Characterization of Antibody Probes of Module 2 of the 6-Deoxyerythronolide B Synthase	9
Identification of Filamin A Mechanobinding Partner III: SAV1 Specifically Interacts with Filamin A Mechanosensitive Domain 21	9
A Novel Color Switch of Microbial Rhodopsin	9
DJ-1 Molecular Chaperone Activity Depresses Tau Aggregation Propensity through Interaction with Monomers	9
Combined Pulsed Electron Double Resonance EPR and Molecular Dynamics Investigations of Calmodulin Suggest Effects of Crowding Agents on Protein Structures	9
Vitamin E Does Not Disturb Polyunsaturated Fatty Acid Lipid Domains	9
Identification of Novel Compounds Inhibiting the Kinase Activity of the CDK5/p25 Complex via Direct Binding to p25	9
Ganglioside-Enriched Phospholipid Vesicles Induce Cooperative Aβ Oligomerization and Membrane Disruption	9
Structure-Based Optimization of Protease–Inhibitor Interactions to Enhance Specificity of Human Stefin-A against Falcipain-2 from the Plasmodium falciparum 3D7 Strain	9
Structural Insights into Binding of Remdesivir Triphosphate within the Replication–Transcription Complex of SARS-CoV-2	9
Human Translesion Synthesis Polymerases polκ and polη Perform Error-Free Replication across N2-dG Methyleugenol and Estragole DNA Adducts	9
RNA Post-Transcriptional Modifications in Two Large Subunit Intermediates Populated in E. coli Cells Expressing Helicase Inactive R331A DbpA	9
Biochemical and HDX Mass Spectral Characterization of the SARS-CoV-2 Nsp1 Protein	9
13C Electron Nuclear Double Resonance Spectroscopy-Guided Molecular Dynamics Computations Reveal the Structure of the Enzyme–Substrate Complex of an Active, N-Linked Glycosylated Lip	9
Role of the Coiled-Coil Domain in Allosteric Activity Regulation in Soluble Guanylate Cyclase	9
Synthesis of Bispecific Antibody Conjugates Using Functionalized Poly-ADP-ribose Polymers	9
Using a Single Peptide to Electrochemically Sense Multiple Kinases	9
The PqsE Active Site as a Target for Small Molecule Antimicrobial Agents against Pseudomonas aeruginosa	9
Transient Prenyltransferase–Cyclase Association in Fusicoccadiene Synthase, an Assembly-Line Terpene Synthase	9
C3- and C3/C5-Epimerases Required for the Biosynthesis of the Capsular Polysaccharides from Campylobacter jejuni	9
Mechanism of Asparagine-Mediated Proton Transfer in Photosynthetic Reaction Centers	9
Issue Publication Information	9
Transient-State Kinetic Analysis of the RNA Polymerase II Nucleotide Incorporation Mechanism	9
Rapid Kinetics of Pistol Ribozyme: Insights into Limits to RNA Catalysis	9
RNA Polymerase Ribozyme That Recognizes the Template–Primer Complex through Tertiary Interactions	9
Lipidome of the Bacteroides Genus Containing New Peptidolipid and Sphingolipid Families Revealed by Multiple-Stage Mass Spectrometry	9
Predicted Structure of the BciC Enzyme Catalyzing the Removal of the C132-Methoxycarbonyl Group for Biosynthesis of Chlorosomal Chlorophylls: A Mechanism for Dual Catalytic Functions of Hyd	9
Inside-Out Design of Zinc-Binding Proteins with Non-Native Backbones	9
PARP1 Incises Abasic Sites and Covalently Cross-links to 3′-DNA Termini via Cysteine Addition Not Reductive Amination	9
Effect of Phosphate and Ferritin Subunit Composition on the Kinetics, Structure, and Reactivity of the Iron Core in Human Homo- and Heteropolymer Ferritins	9
The Metabolome Weakens RNA Thermodynamic Stability and Strengthens RNA Chemical Stability	9
Bioinspired Design of Artificial Signaling Systems	9
A Direct Assay for Measuring the Activity and Inhibition of Coactivator-Associated Arginine Methyltransferase 1	9
Putative Protein Interactome of the Rhomboid Protease RHBDL4	9
Issue Publication Information	9
Covalent Adduct Formation in Methylthio-d-ribose-1-phosphate Isomerase: Reaction Intermediate or Artifact?	9
Structural and Biochemical Characterization of the Human Angiogenin–Proliferating Cell Nuclear Antigen Interaction	9
Buffers, Especially the Good Kind	8
How ATP and dATP Act as Molecular Switches to Regulate Enzymatic Activity in the Prototypical Bacterial Class Ia Ribonucleotide Reductase	8
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Water’s Variable Role in Protein Stability Uncovered by Liquid-Observed Vapor Exchange NMR	8
Biosynthetic Strategies of Berberine Bridge Enzyme-like Flavoprotein Oxidases toward Structural Diversification in Natural Product Biosynthesis	8
The 2-Aminopyridine Nucleobase Improves Triple-Helical Recognition of RNA and DNA When Used Instead of Pseudoisocytosine in Peptide Nucleic Acids	8
Liquid–Liquid Phase Separation in Biology: Specific Stoichiometric Molecular Interactions vs Promiscuous Interactions Mediated by Disordered Sequences	8
Cyanobacterial Phycobilisome Allostery as Revealed by Quantitative Mass Spectrometry	8
Issue Publication Information	8
Structural Analysis of Phosphonopyruvate Decarboxylase RhiEF: First Insights into an Ancestral Heterooligomeric Thiamine Pyrophosphate-Dependent Decarboxylase	8
Visualization of Platelet Integrins via Two-Photon Microscopy Using Anti-transmembrane Domain Peptides Containing a Blue Fluorescent Amino Acid	8
Pif1 Helicase Mediates Remodeling of Protein-Nucleic Acid Complexes by Promoting Dissociation of Sub1 from G-Quadruplex DNA and Cdc13 from G-Rich Single-Stranded DNA	8
Issue Publication Information	8
Development of Enzyme-Based Approaches for Recycling PET on an Industrial Scale	8
Tryptophan-Centric Bioinformatics Identifies New Lasso Peptide Modifications	8
Opposing Effects of PhoPQ and PmrAB on the Properties of Salmonella enterica serovar Typhimurium: Implications on Resistance to Antimicrobial Peptides	8
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Identification of 2-Sulfonyl/Sulfonamide Pyrimidines as Covalent Inhibitors of WRN Using a Multiplexed High-Throughput Screening Assay	8
Lipid Nanoparticles Deliver mRNA to the Brain after an Intracerebral Injection	8
Structures of Plasmodium falciparum Chloroquine Resistance Transporter (PfCRT) Isoforms and Their Interactions with Chloroquine	8