Computer Physics Communications

Article	Citations
Physics-aware POD-based learning for Ab initio QEM-Galerkin simulations of periodic nanostructures	8331
GDGen: A gradient descent-based methodology for the generation of optimized spatial configurations of customized clusters in computational simulations	357
Comparison of two different integration methods for the (1+1)-dimensional Schrödinger-Poisson equation	169
Editorial Board	132
Design and implementation of a novel approach for long-lived particle reconstruction in LHCb experiment at CERN	117
PENGEOM – A general-purpose geometry package for Monte Carlo simulation of radiation transport in complex material structures (New Version Announcement)	108
Coupling the time-warp algorithm with the graph-theoretical kinetic Monte Carlo framework for distributed simulations of heterogeneous catalysts	104
FlashSim: A novel particle-in-cell numerical model for vacuum surface flashover simulation based on finite element method	78
A portable and flexible implementation of the Wang–Landau algorithm in order to determine the density of states	77
A Multiscale Stochastic Particle Method Based on the Fokker-Planck Model for Diatomic Gas Flows	75
GPU-accelerated simulations of quantum annealing and the quantum approximate optimization algorithm	71
QERaman: An open-source program for calculating resonance Raman spectra based on Quantum ESPRESSO	67
Global constraints preserving Lagrange multiplier approach for the incompressible flow-coupled phase-field vesicle membrane models	66
Best of both worlds: Enforcing detailed balance in machine learning models of transition rates	65
HTEM: High-throughput toolkit for elasticity modeling	65
VacuumTunneling: A package to solve bounce equation with renormalization factor	65
A new way to use nonlocal symmetries to determine first integrals of second-order nonlinear ordinary differential equations	62
A novel class of explicit divergence-free time-domain methods for efficiently solving Maxwell's equations	62
An implicit time integration approach for simulation of corona discharges	59
Quasi-exact ground-state extrapolation for the random-field Potts model	57
Complete Lagrangian and set of Feynman rules for scalar leptoquarks	56
A C++ code for simulations of RHEED intensity oscillations within the kinematical approximation	54
ERCS24: An updated version of the ERCS08 program for calculations of the cross sections for atomic electron removal based on the ECPSSR theory and its variants	53
ERYA-Bulk and ERYA-Profiling: An application for quantitative PIGE analysis	52
A dynamical particle merging and splitting algorithm for Particle-In-Cell simulations	51

epiq: An open-source software for the calculation of electron-phonon interaction related properties	51
2D Fourier finite element formulation for magnetostatics in curvilinear coordinates with a symmetry direction	49
DAMQT 3: Advanced suite for the analysis of molecular density and related properties in large systems	48
KLIFF: A framework to develop physics-based and machine learning interatomic potentials	48
twoPhaseInterTrackFoam: An OpenFOAM module for arbitrary Lagrangian/Eulerian interface tracking with surfactants and subgrid-scale modeling	47
FeAmGen.jl: A Julia program for Feynman Amplitude Generation	46
A method for optimizing different geometric shields of D-T neutron generators by combining BP neural network and Analytic Hierarchy Process	46
A hybrid model to calculate the spin wave excitations in ferromagnetic/non-magnetic multilayers	45
Jiezi: An open-source Python software for simulating quantum transport based on non-equilibrium Green's function formalism	45
Virtual lattice method for efficient Monte Carlo transport simulation of dispersion nuclear fuels	44
FeynMG: A FeynRules extension for scalar-tensor theories of gravity	44
A class of linearization-based collocation methods for initial value and boundary value engineering problems	44
Evaluation of Feynman integrals with arbitrary complex masses via series expansions	43
Python Group Additivity (pGrAdd) software for estimating species thermochemical properties	42
CoupledElectricMagneticDipoles.jl - Julia modules for coupled electric and magnetic dipoles method for light scattering, and optical forces in three dimensions	42
NeatIBP 1.0, a package generating small-size integration-by-parts relations for Feynman integrals	42
RCWA4D: Electromagnetic solver for layered structures with incommensurate periodicities	41
HEAPS: A user-friendly tool for the design and exploration of high-entropy alloys based on semi-empirical parameters	41
Generation of fusion and fusion-evaporation reaction cross-sections by two-step machine learning methods	41
carlomat_4.0, a new version of the general purpose Monte Carlo program	40
Fast iterative method for local steric Poisson–Boltzmann theories in biomolecular solvation	39
TIFF: Gyrofluid turbulence in full-f and full-k	38
Cache blocking strategies applied to flux reconstruction	38
Atomistic approach to the strain field in finite-sized heterostructures	36
An efficient way to determine Liouvillian first integrals of rational second order ordinary differential equations	35
TRACK: A python code for calculating the transport properties of correlated electron systems using Kubo formalism	35
Clinamen2: Functional-style evolutionary optimization in Python for atomistic structure searches	34
On the implementation of flux limiters in algebraic frameworks	34
Efficient computation of the magnetic field created by a toroidal volumetric current of convex cross section with application to the study of the magnetic confinement in tokamaks	33
Time diffusion method for gyrokinetic simulation of electrostatic turbulence with kinetic electrons	33
Multi-expression programming for enhancing MHD heat transfer in a nanofluid-filled enclosure with heat generation and viscous dissipation	32
KaiEDJ: A program conducting dynamical mean-field theory and magnetic force theory calculation for correlated magnetic materials	32
Analytic model for the propagation of a collisionless neutral beam	31
gSeaGen code by KM3NeT: An efficient tool to propagate muons simulated with CORSIKA	31
FVM realization in Eulerian SPH: A comparative study within unified codebase	31
Materials Learning Algorithms (MALA): Scalable machine learning for electronic structure calculations in large-scale atomistic simulations	30
LinApart: Optimizing the univariate partial fraction decomposition	30
Quasi-Helmholtz decomposition, Gauss' laws and charge conservation for finite element particle-in-cell	29
Uniform patterns formation based on Gray-Scott model for 3D printing	29
SBETHE: Stopping powers of materials for swift charged particles from the corrected Bethe formula (new version announcement)	29
ERMES 20.0: Open-source finite element tool for computational electromagnetics in the frequency domain	29
GRASPC – GRASP package adapted for the generation of continuum orbitals wave functions	29
Generalizable models of magnetic hysteresis via physics-aware recurrent neural networks	28
Data-driven, multi-moment fluid modeling of Landau damping	28
A first-principles method to calculate fourth-order elastic constants of solid materials	28
High order compact augmented methods for Stokes equations with different boundary conditions	28
BSMPT v3 a tool for phase transitions and primordial gravitational waves in extended Higgs sectors	28
Models of configurationally-complex alloys made simple	28
CDPDS: Coupled dipole method-based photonic dispersion solver	27
TorchDA: A Python package for performing data assimilation with deep learning forward and transformation functions	26

Comparing open-source DEM frameworks for simulations of common bulk processes	26
ana_cont: Python package for analytic continuation	26
TBPLaS: A tight-binding package for large-scale simulation	26
An adaptive learning strategy for surrogate modeling of high-dimensional functions - Application to unsteady hypersonic flows in chemical nonequilibrium	26
DRalgo: A package for effective field theory approach for thermal phase transitions	26
Construction of machine-learning interatomic potential under heat flux regularization and its application to power spectrum analysis for silver chalcogenides	25
Py-EFIT: A new Python package for plasma equilibrium reconstruction on EAST tokamak	25
Z′-explorer: A simple tool to probe Z′ models against LHC data	25
nuSQuIDS: A toolbox for neutrino propagation	25
A new version of PyWolf for the propagation of partially coherent light in media other than free space	25
FlexibleDecay: An automated calculator of scalar decay widths	24
PolyHoop: Soft particle and tissue dynamics with topological transitions	24
The polarimeter vector for τ → 3πν decays	24
A binary filter inspired from the PIC sparse grid technique – Illustration on the XTOR-K code	24
RydIQule: A graph-based paradigm for modeling Rydberg and atomic sensors	23
JuTrack: A Julia package for auto-differentiable accelerator modeling and particle tracking	23
Parallel finite-element codes for the Bogoliubov-de Gennes stability analysis of Bose-Einstein condensates	23
libEMM: A fictious wave domain 3D CSEM modelling library bridging sequential and parallel GPU implementation	23
pgm: A Python package for free energy calculations within the phonon gas model	23
Constrained control of the radiative transport equation: A novel approach based on the frozen diffusion model	23
A unified machine learning approach for reconstructing hadronically decaying tau leptons	23
A multi-domain lattice Boltzmann method for mesh refinement with curved boundary interfaces	22
Efficient calculation of thermodynamic properties of baryon-rich QCD matter from heavy-ion transport models	22
tinie – a software package for electronic transport through two-dimensional cavities in a magnetic field	22
GRANDlib: A simulation pipeline for the Giant Radio Array for Neutrino Detection (GRAND)	22
Machine-learning enhanced predictors for accelerated convergence of partitioned fluid-structure interaction simulations	21
ScaleLat: A chemical structure matching algorithm for mapping atomic structure of multi-phase system and high entropy alloys	21
∂PV: An end-to-end differentiable solar-cell simulator	21
Redistribution of the post-reaction internal energies in DSMC using quantum-kinetic model	20
On the evaluation of the Appell F2 double hypergeometric function	20
A hybrid method combining ISPH with graph neural network for simulating free-surface flows	20
Fast exact algorithm for neutrino oscillation in constant matter density	20
FeynGKZ: A Mathematica package for solving Feynman integrals using GKZ hypergeometric systems	20
GPU-acceleration of tensor renormalization with PyTorch using CUDA	20
VISROC 2.0: Updated Software for the Visualization of the significance of Receiver Operating Characteristics based on confidence ellipses	20
All-around local structure classification with supervised learning: The example of crystal phases and dislocations in complex oxides	20
Update of HΦ: Newly added functions and	19
Interatomic potentials for graphene reinforced metal composites: Optimal choice	19
A practical guide to writing a radiative transfer code	19
KANTBP 3.1: A program for computing energy levels, reflection and transmission matrices, and corresponding wave functions in the coupled-channel and adiabatic approaches	19
GALÆXI: Solving complex compressible flows with high-order discontinuous Galerkin methods on accelerator-based systems	19
WanTiBEXOS: A Wannier based Tight Binding code for electronic band structure, excitonic and optoelectronic properties of solids	19
ASTI: Data assimilation system for particle and heat transport in toroidal plasmas	19
UCNS3D: An open-source high-order finite-volume unstructured CFD solver	18
A generalized external circuit model for electrostatic particle-in-cell simulations	18
Improvements in charged lepton and photon propagation for the software PROPOSAL	18
A pencil-distributed finite-difference solver for extreme-scale calculations of turbulent wall flows at high Reynolds number	18
Numerical multidimensional integration with PyMikor	18
RaDiO: An efficient spatiotemporal radiation diagnostic for particle-in-cell codes	18
An immersed boundary lattice Boltzmann method on block-structured adaptive grids for the simulation of particle-laden flows on CPUs/GPUs	18
Implementation and optimisation of the cdugksFoam solver on the Sunway TaihuLight supercomputer	18
Handling shape optimization of superconducting cavities with DNMOGA	18
Bit-twiddling hacks for gamma matrices	18
BSMArt: Simple and fast parameter space scans	17
The LisbOn KInetics Monte Carlo solver	17
Efficient computation of optical excitations in two-dimensional materials with the Xatu code	17
A Monte Carlo algorithm to measure probabilities of rare events in cluster-cluster aggregation	17
LIBAMI: Implementation of algorithmic Matsubara integration	17
uniGasFoam: A particle-based OpenFOAM solver for multiscale rarefied gas flows	17
Multiple spatio-temporal attention network: A deep convolutional network for spatio-temporal evolution prediction of flow fields	17
Spinsim: A GPU optimized python package for simulating spin-half and spin-one quantum systems	17
Animating collider processes with event-time-frame format	17
CRYSTALpytools: A Python infrastructure for the Crystal code	17
MaRTIn – Massive Recursive Tensor Integration	17
Continuum solutions to the two–center Coulomb problem in prolate spheroidal coordinates	17
A 1-D/3-D coupling approach for compressible non-equilibrium two-phase flows using the Baer-Nunziato model based on the Finite-Volume framework	17
Quasi-optimal domain decomposition method for neural network-based computation of the time-dependent Schrödinger equation	17
Peng: A program for transport properties of low-density binary gas mixtures	16
An efficient saddle search method for ordered phase transitions involving translational invariance	16
A brief introduction to PACIAE 4.0	16
Jupyter widgets and extensions for education and research in computational physics and chemistry	16
An efficient three-dimensional mesh quality optimization method based on gradient-enhanced probabilistic model	16
Data-driven reduced modeling of streamer discharges in air	16
ReMKiT1D - A framework for building reactive multi-fluid models of the tokamak scrape-off layer with coupled electron kinetics in 1D	16
HoloGen: An open-source toolbox for high-speed hologram generation	16
A differentiable programming framework for spin models	16
TorchAmi: Generalized CPU/GPU implementation of algorithmic matsubara integration	16
Nanophotonic resonance modes with the nanobem toolbox	15
TLBfind: a Thermal Lattice Boltzmann code for concentrated emulsions with FINite-size Droplets	15
Application of stiffness confinement method within variational nodal method for solving time-dependent neutron transport equation	15

Adaptive workflow for simulation of RF heaters	15
Electrical impulse characterization along actin filaments in pathological conditions	15
A massively parallel spatially resolved stochastic cluster dynamics method for simulations of irradiated materials	15
mbsolve: An open-source solver tool for the Maxwell-Bloch equations	15
XLB: A differentiable massively parallel lattice Boltzmann library in Python	15
PM2D: A parallel GPU-based code for the kinetic simulation of laser plasma instabilities at large scales	14
DarkNews: A Python-based event generator for heavy neutral lepton production in neutrino-nucleus scattering	14
GHW: A simulation code for gyrofluid Hasegawa-Wakatani plasma turbulence	14
LES/DNS fluid-structure interaction simulation of non-linear slender structures in Nektar++ framework	14
LAMMPS - a flexible simulation tool for particle-based materials modeling at the atomic, meso, and continuum scales	14
A boundary integral based particle initialization algorithm for Smooth Particle Hydrodynamics	14
Efficient multi-GPU implementation of a moving boundary approach in rotor flow simulation using LBM and level-set method	14
SPACE: 3D parallel solvers for Vlasov-Maxwell and Vlasov-Poisson equations for relativistic plasmas with atomic transformations	14
Implementation of a direct-addressing based lattice Boltzmann GPU solver for multiphase flow in porous media	14
DeepFlame 2.0: A new version for fully GPU-native machine learning accelerated reacting flow simulations under low-Mach conditions	14
A comprehensive framework to enhance numerical simulations in the spectral-element code Nek5000	14
Comparison of Bayesian and particle swarm algorithms for hyperparameter optimisation in machine learning applications in high energy physics	14
Development of a parallel CUDA algorithm for solving 3D guiding center problems	14
MP-CITDSE: A set of ab-initio programs for the simulation of hydrogenic and helium-like atom-laser interactions	14
Distributed computing for physics-based data-driven reduced modeling at scale: Application to a rotating detonation rocket engine	14
FiniteFieldSolve: Exactly solving large linear systems in high-energy theory	14
Models of advanced recording systems: A multi-timescale micromagnetic code for granular thin film magnetic recording systems	14
CaLES: A GPU-accelerated solver for large-eddy simulation of wall-bounded flows	14
A full-potential and multiscale computational scheme for interactions between ultrafast intense laser pulses and condensed medium	14
A simplified conservation flux scheme for gas kinetics based on OpenFOAM framework I: Shakhov model	13
An exponential integrator/WENO discretization for sonic-boom simulation on modern computer hardware	13
QuForge: A library for qudits simulation	13
Chrono DEM-Engine: A Discrete Element Method dual-GPU simulator with customizable contact forces and element shape	13
Direct/split invariant-preserving Fourier pseudo-spectral methods for the rotation-two-component Camassa–Holm system with peakon solitons	13
Semtex: Development and application of the solver methodology for incompressible flows with generalized Newtonian rheologies	13
Algorithm for computing the electron-positron yield from the linear Breit-Wheeler process in high-intensity laser-plasma interactions	13
ftint: Calculating gradient-flow integrals with pySecDec	13
Pineline: Industrialization of high-energy theory predictions	13
CellListMap.jl: Efficient and customizable cell list implementation for calculation of pairwise particle properties within a cutoff	13
Numerical algorithm based on regularized equations for incompressible flow modeling and its implementation in OpenFOAM	13
A spheropolyhedral-based discrete element lattice Boltzmann method for simulation of non-spherical adhesive particulate flow	13
Multiresolution of the one dimensional free-particle propagator. Part 2: Implementation	13
Data-analysis software framework 2DMAT and its application to experimental measurements for two-dimensional material structures	13
Pyg4ometry: A Python library for the creation of Monte Carlo radiation transport physical geometries	13
An algorithm for automated extraction of resonance parameters from the stabilization method	13
Implementing a neural network interatomic model with performance portability for emerging exascale architectures	13
On the application of Jacobian-free Riemann solvers for relativistic radiation magnetohydrodynamics under M1 closure	13
HTMPC: A heavily templated C++ library for large scale particle-based mesoscale hydrodynamics simulations using multiparticle collision dynamics	13
Self-consistent field theory for loop-containing polymers: A general algorithm for path-determination	13
Numerical simulation of thermal counterflow in superfluid helium: Investigating the effect of rotation and heat flux on the surface of the cylinder	13
CPAFT: A consistent parallel advancing front technique for unstructured triangular/tetrahedral mesh generation	13
Reducing the computational load – atomic multiconfiguration calculations based on configuration state function generators	13
A fast and efficient computation method for reflective diffraction simulations	13
TRIQS/SOM 2.0: Implementation of the stochastic optimization with consistent constraints for analytic continuation	12
SSLG4: A novel scintillator simulation library for Geant4	12
Multilevel Monte Carlo methods for the Grad-Shafranov free boundary problem	12
Discovery and inversion of the viscoelastic wave equation in inhomogeneous media	12
StringSpinner - adding spin to the PYTHIA string fragmentation	12
INGRID: An interactive grid generator for 2D edge plasma modeling	12
Accurate-geometry-embodied finite element method for phonon Boltzmann transport equation	12
lifex-cfd: An open-source computational fluid dynamics solver for cardiovascular applications	12
A novel S /MOC collaborative method for few-group cross-section generation with versatile neutron spectral adaptability in advanced reactor physics analysis	12
Optimizing shift selection in multilevel Monte Carlo for disconnected diagrams in lattice QCD	12
Optimized parallelization of boundary integral Poisson-Boltzmann solvers	12
QuOCS: The quantum optimal control suite	12
FORTRESS: FORTRAN programs to solve coupled Gross-Pitaevskii equations for spin-orbit coupled spin-f Bose-Einstein condensate with spin f = 1 or 2	12
CMInject: Python framework for the numerical simulation of nanoparticle injection pipelines	12
Compatible and energy conserving multi-material arbitrary Lagrangian Eulerian scheme for multi-group radiation hydrodynamics simulations	12
Molecular arrangement and fringe identification and analysis from molecular dynamics (MAFIA-MD): A tool for analyzing the molecular structures formed during reactive molecular dynamics simulation of h	12
Higher-order elastic constitutive relation: Micro mechanism and application to acoustoelasticity	12
pCI: A parallel configuration interaction software package for high-precision atomic structure calculations	12
Parallel diffusion operator for magnetized plasmas with improved spectral fidelity	12
pyBoLaNO: A Python symbolic package for normal ordering involving bosonic ladder operators	12
QUANTUM ESPRESSO implementation of the RPA-based functional	12
An open-source coupled method for aeroacoustics modelling	12
Development of the General Bateman Solution using fractional calculus: A theoretical and algorithmic approach	12
Accurate simulation of the anisotropic dendrite crystal growth by the 3DVar data assimilation	11
TeNeS: Tensor network solver for quantum lattice systems	11
Multi-photon Monte Carlo event generator KKMCee for lepton and quark pair production in lepton colliders	11
GPU-enabled extreme-scale turbulence simulations: Fourier pseudo-spectral algorithms at the exascale using OpenMP offloading	11
QOptCraft: A Python package for the design and study of linear optical quantum systems	11
pARTn: A plugin implementation of the Activation Relaxation Technique nouveau that takes over the FIRE minimisation algorithm	11
A GPU-based compact conservative characteristic finite volume parallel algorithm for advection diffusion equations	11
Perfectly Matched Layers implementation for E-H fields and complex wave envelope propagation in the Smilei PIC code	11
FlexibleSUSY extended to automatically compute physical quantities in any beyond the standard model theory: Charged lepton flavor violation processes, Higgs decays, and user-defined observables	11
detonationFoam: An open-source solver for simulation of gaseous detonation based on OpenFOAM	11
Development of a gyrokinetic hyperbolic solver based on discontinuous Galerkin method in tokamak geometry	11
Axially-deformed solution of the Skyrme-Hartree-Fock-Bogoliubov equations using the transformed harmonic oscillator basis (IV) hfbtho (v4.0): A new version of the program	11
A numerical algorithm for solving the coupled Schrödinger equations using inverse power method	11
L-MAU: A multivariate time-series network for predicting the Cahn-Hilliard microstructure evolutions via low-dimensional approaches	11
ComDMFT v.2.0: Fully self-consistent ab initio GW+EDMFT for the electronic structure of correlated quantum materials	11
Energy network for state estimation with random sensors and sparse labels	11
Code for molecular dynamics simulation of two dimensional Mercedes-Benz water model	11
HODG:high-order discontinuous Galerkin methods for solving compressible Euler and Navier-Stokes equations - an open-source component-based development framework	11
ECCPA: Calculation of classical and quantum cross sections for elastic collisions of charged particles with atoms	11
SOD2D: A GPU-enabled Spectral Finite Elements Method for compressible scale-resolving simulations	11
Pyrough: A tool to build 3D samples with rough surfaces for atomistic and finite-element simulations	11
Structure-preserving parametric finite element methods for anisotropic surface diffusion flow with minimal deformation formulation	11
A hybrid deep learning model for optimizing particle identification systems	11
QuantumDNA: A python package for analyzing quantum charge dynamics in DNA and exploring its biological relevance	11