Computers in Biology and Medicine

Papers
(The TQCC of Computers in Biology and Medicine is 14. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-07-01 to 2025-07-01.)
ArticleCitations
Editorial Board430
Editorial Board385
Diffuse tumors: Molecular determinants shared by different cancer types347
Functional identification and prediction of lncRNAs in esophageal cancer295
Identifying indications for novel drugs using electronic health records292
Hybrid offline and self-knowledge distillation for acute ischemic stroke lesion segmentation from non-contrast CT scans279
Carotid single- and dual-layer stents reduce the wall adhesion of platelets by influencing flow and cellular transport266
Identification of JUN as determinant of osteoarthritis and its inhibition by the Chinese herbal formulae Zhuanggu Huoxue Tang252
Pathogenicity classification of missense mutations based on deep generative model247
Pedicle drilling force control of a robotic surgical system via spine-soft tissue coupling model and parameters optimization237
A partially shared joint clustering framework for detecting protein complexes from multiple state-specific signed interaction networks231
S2FLNet: Hepatic steatosis detection network with body shape225
Automated identification of patient subgroups: A case-study on mortality of COVID-19 patients admitted to the ICU212
Contrastive learning based method for X-ray and CT registration under surgical equipment occlusion210
Enhancing targeted tumor treatment: A novel fuzzy logic framework for precision drug delivery strategy selection206
A self-supervised COVID-19 CT recognition system with multiple regularizations204
Assessing clinical utility of machine learning and artificial intelligence approaches to analyze speech recordings in multiple sclerosis: A pilot study202
Conditional GAN based augmentation for predictive modeling of respiratory signals201
Multiscale differential geometry learning of networks with applications to single-cell RNA sequencing data197
Causal relationship between slow waves of arterial, intracranial pressures and blood velocity in brain194
How CLSPN could demystify its prognostic value and potential molecular mechanism for hepatocellular carcinoma: A crosstalk study194
Development and validation of a neutrophil extracellular traps-related gene signature for lower-grade gliomas188
Towards a better understanding of TF-DNA binding prediction from genomic features185
D-glucose-conjugated thioureas containing 2-aminopyrimidine as potential multitarget inhibitors for type 2 diabetes mellitus: Synthesis and biological activity study183
SURVS: A Swin-Unet and game theory-based unsupervised segmentation method for retinal vessel177
A systematic review on the state-of-the-art strategies for protein representation176
Longitudinal dementia trajectories for Alzheimer’s Disease characterization and prediction166
Deriving a suitable schedule through robust H166
Mapping synthetic binding proteins epitopes on diverse protein targets by protein structure prediction and protein-protein docking165
Personalized brachytherapy dose reconstruction using deep learning154
A computational model of the effects of macronutrients absorption and physical exercise on hormonal regulation and metabolic homeostasis146
A method for predicting linear and conformational B-cell epitopes in an antigen from its primary sequence145
Red blood cell passage through deformable interendothelial slits in the spleen: Insights into splenic filtration and hemodynamics144
Eye movement analysis for real-world settings using segmented linear regression143
The role and potential of computer-aided drug discovery strategies in the discovery of novel antimicrobials142
Performance optimization of differential evolution with slime mould algorithm for multilevel breast cancer image segmentation141
A novel Harris Hawks Optimization-based clustering method for elucidating genetic associations in osteoarthritis and Diverse Cancer Types141
Analysis of COVID-19 pandemic in USA, using Topological Weighted Centroid140
Non-same-scale feature attention network based on BPD for medical image segmentation138
Adaptive nonlinear filtering algorithms for removal of non-stationary noise in electronystagmographic signals138
Unraveling the complexities of pathological voice through saliency analysis138
Graph neural network-based subgraph analysis for predicting adverse drug events138
Reversing skin cancer adversarial examples by multiscale diffusive and denoising aggregation mechanism136
Class-Specific Distribution Alignment for semi-supervised medical image classification136
Discrete element method-based simulation system for predicting natural stone evacuation pathways in patients with urolithiasis135
Evaluation of the mechanical behaviour of the expandable wedge locked nail fixation in retrograde use: A finite element study135
A novel mobile phone and tablet application for automatized calculation of pain extent134
CauDR: A causality-inspired domain generalization framework for fundus-based diabetic retinopathy grading133
JoCoRank: Joint correlation learning with ranking similarity regularization for imbalanced fetal brain age regression133
Two-stage error detection to improve electron microscopy image mosaicking133
KNU-DTI: KNowledge United Drug-Target Interaction prediction131
Editorial Board131
Disclosing neonatal pain in real-time: AI-derived pain sign from continuous assessment of facial expressions130
Corrigendum to “Unraveling the molecular landscape of non-small cell lung cancer: Integrating bioinformatics and statistical approaches to identify biomarkers and drug repurposing” [Comput. Biol. Med.129
Deep learning and machine learning approaches to classify stomach distant metastatic tumors using DNA methylation profiles129
Modelling of thrombus formation, growth and embolisation in the left atrial appendage under atrial fibrillation127
Predictive modeling for early detection of biliary atresia in infants with cholestasis: Insights from a machine learning study127
Drug repositioning for rosacea disease: Biological TARGET identification, molecular docking, pharmacophore mapping, and molecular dynamics analysis126
Mass diffusion in multi-layer systems: an electrical analogue modelling approach123
You get the best of both worlds? Integrating deep learning and traditional machine learning for breast cancer risk prediction122
Prediction of colorectal cancer based on taxonomic levels of microorganisms and discovery of taxonomic biomarkers using the Grouping-Scoring-Modeling (G-S-M) approach118
Deep-learning-based real-time individualization for reduce-order haemodynamic model117
Prediction of lung cancer metastasis by gene expression117
Automated mitral inflow Doppler peak velocity measurement using deep learning114
Electroanatomical mapping of the stomach with simultaneous biomagnetic measurements113
Multi-constraint point set registration with redundant point removal for the registration of coronary arteries113
Vectorial-based analysis of dual-tracer PET imaging: A proof of concept112
Identification of anti-cancer organometallic compounds by inhibition of BCL-2/Bax interactions112
Context encoder transfer learning approaches for retinal image analysis111
ILSHIP: An interpretable and predictive model for hypothyroidism109
Dynamic topography analysis of the cornea and its application to the diagnosis of keratoconus108
Development of closed-loop modelling framework for adaptive respiratory pacemakers107
Dual-Stream Subspace Clustering Network for revealing gene targets in Alzheimer's disease107
A Three-branch Jointed Feature and Topology Decoder guided by game-theoretic interactions for temporomandibular joint segmentation106
Gene-related Parkinson's disease diagnosis via feature-based multi-branch octave convolution network106
FCSU-Net: A novel full-scale Cross-dimension Self-attention U-Net with collaborative fusion of multi-scale feature for medical image segmentation106
Insights from explainable AI in oesophageal cancer team decisions106
Semi-empirical Anticoagulation Model (SAM): Dose prediction during warfarin therapy105
LSDVvac: An immunoinformatics database for vaccine design against lumpy skin disease virus105
Enhancing cell instance segmentation in scanning electron microscopy images via a deep contour closing operator105
Computational prediction of protein folding rate using structural parameters and network centrality measures104
AELGNet: Attention-based Enhanced Local and Global Features Network for medicinal leaf and plant classification104
Synergistic eigenanalysis of covariance and Hessian matrices for enhanced binary classification on health datasets104
Artificial intelligence for identification of candidates for device-aided therapy in Parkinson's disease: DELIST-PD study103
Multi-label classification of fundus images with graph convolutional network and LightGBM102
Improved predictive diagnosis of diabetic macular edema based on hybrid models: An observational study102
A mask R-CNN based automatic assessment system for nail psoriasis severity101
Counting on AR: EEG responses to incongruent information with real-world context101
Automatic eczema classification in clinical images based on hybrid deep neural network100
Dynamic Statistical Attention-based lightweight model for Retinal Vessel Segmentation: DyStA-RetNet100
Identification of potential agonist-like molecules for α2-adrenergic receptor by multi-layer virtual screening to combat sinusitis100
Blood glucose detection based on Teager-Kaiser main energy of photoacoustic signal98
Fine-grained food image classification and recipe extraction using a customized deep neural network and NLP98
Quantitative computed tomography imaging-based classification of cement dust-exposed subjects with an artificial neural network technique98
In silico evaluation of lattice designs for additively manufactured total hip implants97
A general sample-weighted framework for epileptic seizure prediction96
REDDA: Integrating multiple biological relations to heterogeneous graph neural network for drug-disease association prediction96
IVD fibrosis and disc collapse comprehensively aggravate vertebral body disuse osteoporosis and zygapophyseal joint osteoarthritis by posteriorly shifting the load transmission pattern95
Uniqueness of inspiratory airflow patterns in a realistic rat nasal cavity95
Identifying fetal status with fetal heart rate: Deep learning approach based on long convolution95
Classical Simulations on Quantum Computers: Interface-Driven Peptide Folding on Simulated Membrane Surfaces94
MulStack: An ensemble learning prediction model of multilabel mRNA subcellular localization94
Data-driven discovery of sparse dynamical model of cardiovascular system for model predictive control93
Insights into potential mechanisms of asthma patients with COVID-19: A study based on the gene expression profiling of bronchoalveolar lavage fluid93
An efficient model for extracting respiratory and blood oxygen saturation data from photoplethysmogram signals by removing motion artifacts using heuristic-aided ensemble learning model93
Extinction and stationary distribution of a stochastic COVID-19 epidemic model with time-delay92
AGNet: Automatic generation network for skin imaging reports92
DE-JANet: A unified network based on dual encoder and joint attention for Alzheimer’s disease classification using multi-modal data92
EpiTEAmDNA: Sequence feature representation via transfer learning and ensemble learning for identifying multiple DNA epigenetic modification types across species92
Quantifying the influence of combined lung and kidney support using a cardiovascular model and sensitivity analysis-informed parameter identification92
Detecting IDH and TERTp mutations in diffuse gliomas using 1H-MRS with attention deep-shallow networks92
DRBpred: A sequence-based machine learning method to effectively predict DNA- and RNA-binding residues92
The role of mechano-electric feedbacks and hemodynamic coupling in scar-related ventricular tachycardia92
AIScholar: An OpenFaaS-enhanced cloud platform for intelligent medical data analytics92
Pharmacophore-guided computational modeling of quinolone-ATPase conjugate inhibitors targeting DNA GyrB subunit of Staphylococcus aureus91
Context-aggregator: An approach of loss- and class imbalance-aware aggregation in federated learning90
Beyond accuracy: The need for explainable AI in biomedical voice technology89
Numerical analysis of coil designs to expedite fracture healing using dielectrophoresis with S method88
Discrepancy-based diffusion models for lesion detection in brain MRI88
A YOLO based software for automated detection and analysis of rodent behaviour in the open field arena87
Potential inhibitors of the main protease of SARS-CoV-2 and modulators of arachidonic acid pathway: Non-steroidal anti-inflammatory drugs against COVID-1987
The role of the extracellular matrix in the reduction of lateral force transmission in muscle bundles: A finite element analysis87
Artificial intelligence techniques for prediction of drug synergy in malignant diseases: Past, present, and future87
Simulated annealing aided genetic algorithm for gene selection from microarray data86
HOTGpred: Enhancing human O-linked threonine glycosylation prediction using integrated pretrained protein language model-based features and multi-stage feature selection approach86
Computer models evaluating hand tremors in Parkinson's disease patients85
Artificial vascular image generation using blood vessel texture maps84
Visual prior-based cross-modal alignment network for radiology report generation84
Hierarchical cumulative network for unsupervised medical image registration84
Drug repurposing of triazoles against mucormycosis using molecular docking: A short communication83
Prediction of protein N-terminal acetylation modification sites based on CNN-BiLSTM-attention model83
A robust drug recall supply chain management system using hyperledger blockchain ecosystem83
Triage and monitoring of COVID-19 patients in intensive care using unsupervised machine learning82
MCA-net: A multi-task channel attention network for Myocardial infarction detection and location using 12-lead ECGs82
A comprehensive analysis of single-cell RNA transcriptome reveals unique SPP1+ chondrocytes in human osteoarthritis81
Prostate158 - An expert-annotated 3T MRI dataset and algorithm for prostate cancer detection81
Effect of tumor heterogeneity on enhancing drug delivery to vascularized tumors using thermo-sensitive liposomes triggered by hyperthermia: A multi-scale and multi-physics computational model81
DrugormerDTI: Drug Graphormer for drug–target interaction prediction81
Hemodynamic alternations following stent deployment and post-dilation in a heavily calcified coronary artery: In silico and ex-vivo approaches81
Integrating CNN and Bi-LSTM for protein succinylation sites prediction based on Natural Language Processing technique81
Predicting lung cancer survival based on clinical data using machine learning: A review81
Identification of lncRNA associated with the SERPINE1 gene in colorectal cancer through TGF-β pathway80
Molecular modelling and experimental validation identified a new therapeutic inhibitor of toxoplasmosis80
Wearable-based human flow experience recognition enhanced by transfer learning methods using emotion data80
Analysis of domain shift in whole prostate gland, zonal and lesions segmentation and detection, using multicentric retrospective data79
Enhanced depression detection from speech using Quantum Whale Optimization Algorithm for feature selection79
Automatic segmentation of intraluminal thrombosis of abdominal aortic aneurysms from CT angiography using a mixed-scale-driven multiview perception network (M2Net) model79
A review of deep learning-based information fusion techniques for multimodal medical image classification78
Novel ensemble of optimized CNN and dynamic selection techniques for accurate Covid-19 screening using chest CT images78
Emotion recognition in EEG signals using deep learning methods: A review77
An improved RIME optimization algorithm for lung cancer image segmentation77
Temporal relative transformer encoding cooperating with channel attention for EEG emotion analysis77
An efficient image segmentation method for skin cancer imaging using improved golden jackal optimization algorithm76
Performance of multilabel machine learning models and risk stratification schemas for predicting stroke and bleeding risk in patients with non-valvular atrial fibrillation76
Structure-based design of promising natural products to inhibit thymidylate kinase from Monkeypox virus and validation using free energy calculations76
Sparse Dynamic Volume TransUNet with multi-level edge fusion for brain tumor segmentation76
A hybrid methodology for breast screening and cancer diagnosis using thermography76
A deep learning based model using RNN-LSTM for the Detection of Schizophrenia from EEG data75
Automated tool detection with deep learning for monitoring kinematics and eye-hand coordination in microsurgery74
A novel hybrid ViT-LSTM model with explainable AI for brain stroke detection and classification in CT images: A case study of Rajshahi region74
CARES: A Corpus for classification of Spanish Radiological reports74
Integrating biocomputational techniques for Breast cancer drug discovery via the HER-2, BCRA, VEGF and ER protein targets74
GasHisSDB: A new gastric histopathology image dataset for computer aided diagnosis of gastric cancer73
Single-channel EEG based insomnia detection with domain adaptation73
COVID-19 diagnosis using state-of-the-art CNN architecture features and Bayesian Optimization73
Stack-AAgP: Computational prediction and interpretation of anti-angiogenic peptides using a meta-learning framework73
Thyroid region prior guided attention for ultrasound segmentation of thyroid nodules72
A transformer-based deep neural network for arrhythmia detection using continuous ECG signals72
Identification of molecular and cellular infection response biomarkers associated with anthrax infection through comparative analysis of gene expression data72
Exploring molecular mechanisms of diazinon toxicity in HT22 hippocampal neurons through integrated miRNA and mRNA profiling71
A computational framework to simulate the thermochemical process during thermochemical ablation of biological tissues71
Molecular hybridization assisted multi-technique approach for designing USP21 inhibitors to halt catalytic triad-mediated nucleophilic attack and suppress pancreatic ductal adenocarcinoma progression:71
Torque modulation mechanism of the knee joint during balance recovery71
Transcriptome analysis displays new molecular insights into the mechanisms of action of Mebendazole in gastric cancer cells71
Effective fall detection and post-fall breath rate tracking using a low-cost CW Doppler radar sensor71
Interplay of mutations, alternate mechanisms, and treatment breaks in leukaemia: Understanding and implications studied with stochastic models70
PNMC: Four-dimensional conebeam CT reconstruction combining prior network and motion compensation70
Smoke veil prior regularized surgical field desmoking without paired in-vivo data70
Impact of physiological loads of arterial wall on nucleus deformation in endothelial cells: A computational study70
Validation of fluid-structure interaction simulations of the opening phase of phantom mitral heart valves under physiologically inspired conditions70
Characterizing patients at higher cardiovascular risk for prescribed stimulants: Learning from health records data with predictive analytics and data mining techniques69
Ce69
Privacy preserving distributed learning classifiers – Sequential learning with small sets of data69
FIM: A fatigued-injured muscle model based on the sliding filament theory69
Identification of a novel gene signature for the prognosis of sepsis69
Atten-Nonlocal Unet: Attention and Non-local Unet for medical image segmentation69
Repeated measures analysis for steady-state evoked potentials68
Biochemical reaction network topology defines dose-dependent Drug–Drug interactions68
A novel compartmental model to capture the nonlinear trend of COVID-1968
A computational optimization study of a self-expandable transcatheter aortic valve68
Deep learning image registration for cardiac motion estimation in adult and fetal echocardiography via a focus on anatomic plausibility and texture quality of warped image68
The detection of mild traumatic brain injury in paediatrics using artificial neural networks68
Automated engineered-stone silicosis screening and staging using Deep Learning with X-rays68
Cross attention guided multi-scale feature fusion for false-positive reduction in pulmonary nodule detection68
A simplified method for relapsing-remitting multiple sclerosis detection: Insights from resting EEG signals68
CFD simulations of inhalation through a subject-specific human larynx – Impact of the unilateral vocal fold immobility67
Genetic algorithm based image reconstruction applying the digital holography process with the Discrete Orthonormal Stockwell Transform technique for diagnosis of COVID-1967
A fully-convolutional residual encoder-decoder neural network to localize breast cancer on histopathology images67
A novel mTOR-associated gene signature for predicting prognosis and evaluating tumor immune microenvironment in lung adenocarcinoma66
Three-dimensional morphology scoring of hepatocellular carcinoma stratifies prognosis and immune infiltration66
Computationally efficient model to predict the deformations of a cellular foot orthotic66
Estimation of potassium levels in hemodialysis patients by T wave nonlinear dynamics and morphology markers66
Dynamic modeling of antibody repertoire reshaping in response to viral infections65
SWTRU: Star-shaped Window Transformer Reinforced U-Net for medical image segmentation65
Attention2Minority: A salient instance inference-based multiple instance learning for classifying small lesions in whole slide images65
Collaborative networks of transformers and convolutional neural networks are powerful and versatile learners for accurate 3D medical image segmentation65
Role of [18F]-PSMA-1007 PET radiomics for seminal vesicle invasion prediction in primary prostate cancer65
Design and hierarchical analysis of magnetic actuated robot: A governing equation based approach64
Integrating local and global attention mechanisms for enhanced oral cancer detection and explainability64
A multi-granularity convolutional neural network model with temporal information and attention mechanism for efficient diabetes medical cost prediction63
Joint cardiac tissue conductivity and activation time estimation using confirmatory factor analysis63
ACP-MLC: A two-level prediction engine for identification of anticancer peptides and multi-label classification of their functional types63
DNA protein binding recognition based on lifelong learning62
Editorial Board62
SPMLD: A skin pathological image dataset for non-melanoma with detailed lesion area annotation62
Deep learning based classification of multi-label chest X-ray images via dual-weighted metric loss62
Cancer-inspired genomics mapper model for the generation of synthetic DNA sequences with desired genomics signatures62
Designing a bioadjuvant candidate vaccine targeting infectious bursal disease virus (IBDV) using viral VP2 fusion and chicken IL-2 antigenic epitope: A bioinformatics approach62
Bone marrow sparing oriented multi-model image registration in cervical cancer radiotherapy62
A novel virtual robotic platform for controlling six degrees of freedom assistive devices with body-machine interfaces61
Prediction of drug-target interactions via neural tangent kernel extraction feature matrix factorization model61
A wrapper method for finding optimal subset of multimodal Magnetic Resonance Imaging sequences for ischemic stroke lesion segmentation61
Evaluation of Cellpose segmentation with sequential thresholding for instance segmentation of cytoplasms within autofluorescence images61
Enclosing 95% confidence area and volume to center of pressure and center of mass in posturography using optimization algorithm and coordinate ascent methods61
Metagenome comparison (MC): A new framework for detecting unique/enriched OMUs (operational metagenomic units) derived from whole-genome sequencing reads60
Characterization of cancer subtypes associated with clinical outcomes by multi-omics integrative clustering60
A mathematical model of tissue axial and radial diffusion in the microvasculature for intravascular microscopy and phosphorescence quenching data59
recruIT: A cloud-native clinical trial recruitment support system based on Health Level 7 Fast Healthcare Interoperability Resources (HL7 FHIR) and the Observational Medical Outcomes Partnership Commo59
MOSDNET: A multi-omics classification framework using simplified multi-view deep discriminant representation learning and dynamic edge GCN with multi-task learning59
Extensive T1-weighted MRI preprocessing improves generalizability of deep brain age prediction models59
Classifying alkaliphilic proteins using embeddings from protein language model58
Artificial intelligence derived categorizations significantly improve HOMA IR/β indicators: Combating diabetes through cross-interacting drugs58
An unsupervised image registration method employing chest computed tomography images and deep neural networks58
Wearable multisource quantitative gait analysis of Parkinson's diseases58
An efficient cardiovascular disease prediction model through AI-driven IoT technology58
Alcohol patch test with hue-saturation-value model analysis predicts ALDH2 genetic polymorphism58
Structural and functional analysis of disease-associated mutations in GOT1 gene: An in silico study57
QMaxViT-Unet+: A query-based MaxViT-Unet with edge enhancement for scribble-supervised segmentation of medical images57
A bidirectional registration neural network for cardiac motion tracking using cine MRI images56
Two-stage data augmentation for improved ASR performance for dysarthric speech56
Multilevel threshold image segmentation for COVID-19 chest radiography: A framework using horizontal and vertical multiverse optimization56
Computational identification of repurposed drugs against viruses causing epidemics and pandemics via drug-target network analysis56
Directed Graph Mapping exceeds Phase Mapping for the detection of simulated 2D meandering rotors in fibrotic tissue with added noise56
Automatic segmentation and classification of Papanicolaou-stained cells and dataset for oral cancer detection56
Impact of workflow variability on image-based intracranial aneurysm hemodynamics55
Breast cancer detection and classification: A study on the specification and implementation of multilayer perceptron analog artificial neural networks55
SEPO-FI: Deep-learning based software to calculate fusion index of muscle cells55
Novel classification of brain vascular tortuosity measures: A systematic review55
Enhanced breast mass segmentation in mammograms using a hybrid transformer UNet model55
An adaptive language model-based intelligent medication assistant for the decision support of antidepressant prescriptions55
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