Heredity

Article	Citations
Multi-parent populations in crops: a toolbox integrating genomics and genetic mapping with breeding	124
Seed germination and vigor: ensuring crop sustainability in a changing climate	102
Phenology and related traits for wheat adaptation	93
The influence of a priori grouping on inference of genetic clusters: simulation study and literature review of the DAPC method	76
Nonlinear kernels, dominance, and envirotyping data increase the accuracy of genome-based prediction in multi-environment trials	73
Advances in deciphering the genetic basis of insect cuticular hydrocarbon biosynthesis and variation	60
An evaluation of inbreeding measures using a whole-genome sequenced cattle pedigree	43
DNA methylation mediates differentiation in thermal responses of Pacific oyster (Crassostrea gigas) derived from different tidal levels	38
Salinity stress tolerance and omics approaches: revisiting the progress and achievements in major cereal crops	34
Evolution of multiple sex-chromosomes associated with dynamic genome reshuffling in Leptidea wood-white butterflies	33
Applying genomic resources to accelerate wheat biofortification	32
The population genomics of adaptive loss of function	31
Genome-wide association study reveals the genetic determinism of growth traits in a Gushi-Anka F2 chicken population	31
Pedigree-based and phylogenetic methods support surprising patterns of mutation rate and spectrum in the gray mouse lemur	30
Inheritance through the cytoplasm	29
Tribolium beetles as a model system in evolution and ecology	28
A major quantitative trait locus affecting resistance to Tilapia lake virus in farmed Nile tilapia (Oreochromis niloticus)	28
Varietal variation and chromosome behaviour during meiosis in Solanum tuberosum	28
Rearing environment affects the genetic architecture and plasticity of DNA methylation in Chinook salmon	27
High-value pleiotropic genes for developing multiple stress-tolerant biofortified crops for 21st-century challenges	26
High dynamism for neo-sex chromosomes: satellite DNAs reveal complex evolution in a grasshopper	26
House mouse Mus musculus dispersal in East Eurasia inferred from 98 newly determined complete mitochondrial genome sequences	25
Optimizing whole-genomic prediction for autotetraploid blueberry breeding	24
Evolution of novel genes in three-spined stickleback populations	23
Sex determination through X–Y heterogamety in Salix nigra	22

Long-term exhaustion of the inbreeding load in Drosophila melanogaster	20
Multi-level patterns of genetic structure and isolation by distance in the widespread plant Mimulus guttatus	20
Inferring number of populations and changes in connectivity under the n-island model	20
Physical and ecological isolation contribute to maintain genetic differentiation between fire salamander subspecies	20
Progenitor species hold untapped diversity for potential climate-responsive traits for use in wheat breeding and crop improvement	19
Region-level epimutation rates in Arabidopsis thaliana	19
Genetic diversity and selection signatures in maize landraces compared across 50 years of in situ and ex situ conservation	19
Inbred lab mice are not isogenic: genetic variation within inbred strains used to infer the mutation rate per nucleotide site	18
Efficient weighting methods for genomic best linear-unbiased prediction (BLUP) adapted to the genetic architectures of quantitative traits	18
An alternative route of bacterial infection associated with a novel resistance locus in the Daphnia–Pasteuria host–parasite system	17
A duplication of the Anti-Müllerian hormone gene is associated with genetic sex determination of different Oreochromis niloticus strains	17
How the west was won: genetic reconstruction of rapid wolf recolonization into Germany’s anthropogenic landscapes	16
Multi-locus genome-wide association studies (ML-GWAS) reveal novel genomic regions associated with seedling and adult plant stage leaf rust resistance in bread wheat (Triticum aestivum L.)	16
Genetic variation for upper thermal tolerance diminishes within and between populations with increasing acclimation temperature in Atlantic salmon	16
Quantitative genetic architecture of adaptive phenology traits in the deciduous tree, Populus trichocarpa (Torr. and Gray)	16
Performance of Bayesian and BLUP alphabets for genomic prediction: analysis, comparison and results	15
Sex-specific responses to cold in a very cold-tolerant, northern Drosophila species	15
Genetic consequences of social structure in the golden-crowned sifaka	14
Spatiotemporal adaptive evolution of an MHC immune gene in a frog-fungus disease system	14
Genomic insight into the developmental history of southern highbush blueberry populations	14
Population genomics and conservation management of a declining tropical rodent	14
Temporal and genomic analysis of additive genetic variance in breeding programmes	14
Genomic prediction applied to multiple traits and environments in second season maize hybrids	13
Dynamics of sex-biased gene expression during development in the stick insect Timema californicum	13
High elevation increases the risk of Y chromosome loss in Alpine skink populations with sex reversal	13
Weak founder effects but significant spatial genetic imprint of recent contraction and expansion of European beech populations	13
A guide for kernel generalized regression methods for genomic-enabled prediction	13
Genome-wide SNPs detect no evidence of genetic population structure for reef manta rays (Mobula alfredi) in southern Mozambique	13
Population structure and inbreeding in wild house mice (Mus musculus) at different geographic scales	12
Repetitive genomic regions and the inference of demographic history	12
Development and characterization of nitrogen and phosphorus use efficiency responsive genic and miRNA derived SSR markers in wheat	12
On the origin of the widespread self-compatible allotetraploid Capsella bursa-pastoris (Brassicaceae)	12
Trade-offs in the genetic control of functional and nutritional quality traits in UK winter wheat	12
Environmentally induced phenotypic plasticity and DNA methylation changes in a wild potato growing in two contrasting Andean experimental gardens	12
Gene conversion: a non-Mendelian process integral to meiotic recombination	12
Recent innovations and in-depth aspects of post-genome wide association study (Post-GWAS) to understand the genetic basis of complex phenotypes	11
Physical geography, isolation by distance and environmental variables shape genomic variation of wild barley (Hordeum vulgare L. ssp. spontaneum) in the Southern Levant	11
Epigenetic responses of hare barley (Hordeum murinum subsp. leporinum) to climate change: an experimental, trait-based approach	11
From micro- to macroevolution: insights from a Neotropical bromeliad with high population genetic structure adapted to rock outcrops	11
Variable levels of introgression between the endangered Podarcis carbonelli and highly divergent congeneric species	11
Pathogen-associated selection on innate immunity genes (TLR4, TLR7) in a neotropical rodent in landscapes differing in anthropogenic disturbance	11
The effects of drift and selection on latitudinal genetic variation in Scandinavian common toads (Bufo bufo) following postglacial recolonisation	11
Evolution of chaperome gene expression and regulatory elements in the antarctic notothenioid fishes	11
Habitat fragmentation differentially shapes neutral and immune gene variation in a tropical bird species	11
Evolution at two time frames: ancient structural variants involved in post-glacial divergence of the European plaice (Pleuronectes platessa)	11
Recent introgression between Taiga Bean Goose and Tundra Bean Goose results in a largely homogeneous landscape of genetic differentiation	11
Widespread coexistence of self-compatible and self-incompatible phenotypes in a diallelic self-incompatibility system in Ligustrum vulgare (Oleaceae)	11
Rank-invariant estimation of inbreeding coefficients	10
QTL-seq for the identification of candidate genes for days to flowering and leaf shape in pigeonpea	10
Genetic architecture of individual variation in recombination rate on the X chromosome in cattle	10

Species-specific effects of thermal stress on the expression of genetic variation across a diverse group of plant and animal taxa under experimental conditions	10
Short-term effects of controlled mating and selection on the genetic variance of honeybee populations	10
Out of patterns, the euchromatic B chromosome of the grasshopper Abracris flavolineata is not enriched in high-copy repeats	10
Stresses affect inbreeding depression in complex ways: disentangling stress-specific genetic effects from effects of initial size in plants	10
The recombination landscape and multiple QTL mapping in a Solanum tuberosum cv. ‘Atlantic’-derived F1 population	10
Variation in mitochondrial DNA affects locomotor activity and sleep in Drosophila melanogaster	10
The transcriptomic signature of obligate parthenogenesis	10
Mitochondrial genomes from modern and ancient Turano-Mongolian cattle reveal an ancient diversity of taurine maternal lineages in East Asia	10
Additive genetic variation in Pinus radiata bark chemistry and the chemical traits associated with variation in mammalian bark stripping	10
A strategic sampling design revealed the local genetic structure of cold-water fluvial sculpin: a focus on groundwater-dependent water temperature heterogeneity	10
Fitness consequences of hybridization in a predominantly selfing species: insights into the role of dominance and epistatic incompatibilities	9
Neighbor GWAS: incorporating neighbor genotypic identity into genome-wide association studies of field herbivory	9
Improving lodgepole pine genomic evaluation using spatial correlation structure and SNP selection with single-step GBLUP	9
Gamete-level immunogenetic incompatibility in humans–towards deeper understanding of fertilization and infertility?	9
DNA methylation is associated with codon degeneracy in a species of bumblebee	9
Genetics of randomly bred cats support the cradle of cat domestication being in the Near East	9
Major QTL confer race-nonspecific resistance in the co-evolved Cronartium quercuum f. sp. fusiforme–Pinus taeda pathosystem	9
Oxygen, life forms, and the evolution of sexes in multicellular eukaryotes	9
On the genetic architecture of rapidly adapting and convergent life history traits in guppies	9
Single-step genomic prediction of Eucalyptus dunnii using different identity-by-descent and identity-by-state relationship matrices	9
Intragenomic rDNA variation - the product of concerted evolution, mutation, or something in between?	9
Global allele polymorphism indicates a high rate of allele genesis at a locus under balancing selection	9
Infection dynamics, dispersal, and adaptation: understanding the lack of recovery in a remnant frog population following a disease outbreak	9
The evolutionary significance of meiotic drive	8
Balancing selection versus allele and supertype turnover in MHC class II genes in guppies	8
The population genomics of within-host Mycobacterium tuberculosis	8
Genetic purging in captive endangered ungulates with extremely low effective population sizes	8
The sources of variation for individual prey-to-predator size ratios	8
Genomic insights into the historical and contemporary demographics of the grey reef shark	8
Genetic dissection for head blast resistance in wheat using two mapping populations	8
Inferring historical survivals of climate relicts: the effects of climate changes, geography, and population-specific factors on herbaceous hydrangeas	8
Experimental validation of small mammal gut microbiota sampling from faeces and from the caecum after death	8
Utilizing museomics to trace the complex history and species boundaries in an avian-study system of conservation concern	8
Mendel’s laws of heredity on his 200th birthday: What have we learned by considering exceptions?	8
Population genetic differentiation and genomic signatures of adaptation to climate in an abundant lizard	8
Evidence of spatial genetic structure in a snow leopard population from Gansu, China	8
Population genetics of the brooding coral Seriatopora hystrix reveals patterns of strong genetic differentiation in the Western Indian Ocean	8
Predicting recombination frequency from map distance	8
The outstanding scientist, R.A. Fisher: his views on eugenics and race	7
Seasonal changes in recombination characteristics in a natural population of Drosophila melanogaster	7
Oceanographic features and limited dispersal shape the population genetic structure of the vase sponge Ircinia campana in the Greater Caribbean	7
Genome-wide association studies demonstrate that TASP1 contributes to increased muscle fiber diameter	7
Genetic diversity and structure in wild Robusta coffee (Coffea canephora A. Froehner) populations in Yangambi (DR Congo) and their relation to forest disturbance	7
Fast and accurate population admixture inference from genotype data from a few microsatellites to millions of SNPs	7
Whole genome sequencing reveals high differentiation, low levels of genetic diversity and short runs of homozygosity among Swedish wels catfish	7
Inference with selection, varying population size, and evolving population structure: application of ABC to a forward–backward coalescent process with interactions	7
Immune-mediated competition benefits protective microbes over pathogens in a novel host species	7
Evolutionary history and genetic connectivity across highly fragmented populations of an endangered daisy	7
Revisiting a GWAS peak in Arabidopsis thaliana reveals possible confounding by genetic heterogeneity	7
Detecting purging of inbreeding depression by a slow rate of inbreeding for various traits: the impact of environmental and experimental conditions	7
Selection, recombination and population history effects on runs of homozygosity (ROH) in wild red deer (Cervus elaphus)	7
Riverscape genetics in brook lamprey: genetic diversity is less influenced by river fragmentation than by gene flow with the anadromous ecotype	6
Dissecting the loci underlying maturation timing in Atlantic salmon using haplotype and multi-SNP based association methods	6
Sex chromosome evolution in frogs—helpful insights from chromosome painting in the genus Engystomops	6
The value of targeting recombination as a strategy against coronavirus diseases	6
More than meets the eye: syntopic and morphologically similar mangrove killifish species show different mating systems and patterns of genetic structure along the Brazilian coast	6
Quantitative genetics of wing morphology in the parasitoid wasp Nasonia vitripennis: hosts increase sibling similarity	6
Some hope and many concerns on the future of the vaquita	6
Spatial genetic structure of European wild boar, with inferences on late-Pleistocene and Holocene demographic history	6
Genetic, maternal, and environmental influences on sociality in a pedigreed primate population	6
First large-scale genomic prediction in the honey bee	6
The mysterious sex chromosomes of haploid plants	6
Gene based markers improve precision of genome-wide association studies and accuracy of genomic predictions in rice breeding	6
Predicting recombination suppression outside chromosomal inversions in Drosophila melanogaster using crossover interference theory	6
Scalable bias-corrected linkage disequilibrium estimation under genotype uncertainty	6
Phylogeography of the iconic Australian red-tailed black-cockatoo (Calyptorhynchus banksii) and implications for its conservation	6
Prediction of breeding values for group-recorded traits including genomic information and an individually recorded correlated trait	6
Simple inheritance of color and pattern polymorphism in the steppe grasshopper Chorthippus dorsatus	6
Mendel's First Law: partisan interests and the parliament of genes	6
Performance evaluation of six popular short-read simulators	6
Adult survival in migratory caribou is negatively associated with MHC functional diversity	6
The population genomic structure of green turtles (Chelonia mydas) suggests a warm-water corridor for tropical marine fauna between the Atlantic and Indian oceans during the last interglacial	5
Distinct evolutionary trajectories of MHC class I and class II genes in Old World finches and buntings	5
Combining conventional QTL analysis and whole-exome capture-based bulk-segregant analysis provides new genetic insights into tuber sprout elongation and dormancy release in a diploid potato population	5
Multi-faceted approaches for breeding nutrient-dense, disease-resistant, and climate-resilient crop varieties for food and nutritional security	5
The genome-wide rate and spectrum of EMS-induced heritable mutations in the microcrustacean Daphnia: on the prospect of forward genetics	5
A likelihood ratio approach for identifying three-quarter siblings in genetic databases	5
Population genomics and conservation management of the threatened black-footed tree-rat (Mesembriomys gouldii) in northern Australia	5
Evolutionary transition to XY sex chromosomes associated with Y-linked duplication of a male hormone gene in a terrestrial isopod	5
Multi-generation genomic prediction of maize yield using parametric and non-parametric sparse selection indices	5

Idiosyncratic responses to drivers of genetic differentiation in the complex landscapes of Isthmian Central America	5
Low levels of genetic differentiation with isolation by geography and environment in populations of Drosophila melanogaster from across China	5
Patterns of genetic diversity and structure of a threatened palm species (Euterpe edulis Arecaceae) from the Brazilian Atlantic Forest	5
Quercus species divergence is driven by natural selection on evolutionarily less integrated traits	5
Evidence of hybrid breakdown among invasive hybrid cattails (Typha × glauca)	5
Distinct genetic architectures underlie divergent thorax, leg, and wing pigmentation between Drosophila elegans and D. gunungcola	5
Demystifying the mythical Mendel: a biographical review	5
Evolutionary effects of geographic and climatic isolation between Rhododendron tsusiophyllum populations on the Izu Islands and mainland Honshu of Japan	5
A role of asynchrony of seasons in explaining genetic differentiation in a Neotropical toad	5
Genetic structure in Orkney island mice: isolation promotes morphological diversification	5
Recapitulating whole genome based population genetic structure for Indian wild tigers through an ancestry informative marker panel	4
A linkage disequilibrium-based statistical test for Genome-Wide Epistatic Selection Scans in structured populations	4
Development of first linkage map for Silphium integrifolium (Asteraceae) enables identification of sporophytic self-incompatibility locus	4
Contrasting genetic trajectories of endangered and expanding red fox populations in the western U.S	4
Selection-driven adaptation to the extreme Antarctic environment in the Emperor penguin	4
Two transects reveal remarkable variation in gene flow on opposite ends of a European toad hybrid zone	4
Inferring the distribution of fitness effects in patient-sampled and experimental virus populations: two case studies	4
Quality over quantity: unraveling the contributions to cytoplasmic incompatibility caused by two coinfecting Cardinium symbionts	4
Dominance mechanisms in supergene alleles controlling butterfly wing pattern variation: insights from gene expression in Heliconius numata	4
Mendel’s reaction to Darwin’s provisional hypothesis of pangenesis and the experiment that could not wait	4
Long-term impact of conventional and optimal contribution conservation methods on genetic diversity and genetic gain in local pig breeds	4
Genome-wide analysis reveals associations between climate and regional patterns of adaptive divergence and dispersal in American pikas	4
Endosymbionts moderate constrained sex allocation in a haplodiploid thrips species in a temperature-sensitive way	4
Boundaries and hybridization in a secondary contact zone between freshwater mussel species (Family:Unionidae)	4
Introgressive hybridisation between domestic pigs (Sus scrofa domesticus) and endemic Corsican wild boars (S. s. meridionalis): effects of human-mediated interventions	4
Genomic basis of insularity and ecological divergence in barn owls (Tyto alba) of the Canary Islands	4
Contrasting levels of hybridization across the two contact zones between two hedgehog species revealed by genome-wide SNP data	4
Horizontally acquired cysteine synthase genes undergo functional divergence in lepidopteran herbivores	4
Genetic association with boldness and maternal performance in a free-ranging population of grey seals (Halichoerus grypus)	4
Tracing the introduction of the invasive common myna using population genomics	4
Quantitative trait locus analysis of parasitoid counteradaptation to symbiont-conferred resistance	4
Divergence and introgression in small apes, the genus Hylobates, revealed by reduced representation sequencing	4
Population genetics and independently replicated evolution of predator-associated burst speed ecophenotypy in mosquitofish	4
Transcriptional and post-transcriptional regulation of checkpoint genes on the tumour side of the immunological synapse	4
Fragile, unfaithful and persistent Ys—on how meiosis can shape sex chromosome evolution	4
Linkage disequilibrium under polysomic inheritance	4
The male-heterogametic sex determination system on chromosome 15 of Salix triandra and Salix arbutifolia reveals ancestral male heterogamety and subsequent turnover events in the genus Salix	4
Searching for genetic evidence of demographic decline in an arctic seabird: beware of overlapping generations	4