Journal of Biochemistry

Article	Citations
Cellular senescence in the cancer microenvironment	44
Innate immune responses to lysosomal nucleic acid stress	26
Commentary on ‘Structural insights into a bacterial β-glucosidase capable of degrading sesaminol triglucoside to produce sesaminol: towards the understanding of the aglycone recognition mechanism by t	26
Microglia regulate neuronal and behavioural functions under physiological and pathological conditions	22
Corrigendum to: BaeR participates in cephalosporins susceptibility by regulating the expression level of outer membrane proteins in Escherichia coli	21
Biochemical characterization of medaka (Oryzias latipes) fibrinogen gamma and its gene disruption resulting in anemia as a model fish	21
Erratum to: Structural insights into the enhanced thermostability of cysteine substitution mutants of L-histidine decarboxylase from Photobacterium phosphoreum	20
RMST: a long noncoding RNA involved in cancer and disease	15
Inhibition of SARS-CoV-2 nucleocapsid protein–RNA interaction by guanosine oligomeric RNA	14
Lunapark ubiquitinates atlastin-2 for the tubular network formation of the endoplasmic reticulum	14
Development of supercooling preservation method of adherent cultured human cells	14
Long noncoding RNAs transcribed downstream of the human β-globin locus regulate β-globin gene expression	14
Putrescine Biosynthesis from Agmatine by Arginase (TtARG) in Thermus thermophilus	14
Cloning and characterization of Thioredoxin 1 from the Cnidarian Hydra	14
Whole blood transcriptome analysis for age- and gender-specific gene expression profiling in Japanese individuals	14
Obituary IN MEMORY OF A HUMBLE SCIENTIFIC PIONEER, TSUNEO OMURA (1930–2022)	13
Correction to: The Largest Subunit of Human TFIIIC Complex, TFIIIC220, a Lysine Acetyltransferase Targets Histone H3K18	13
The 2023 JB Reviewer Award	13
Generation of endoplasmic reticulum stress-dependent reactive oxygen species mediates TGF-β1-induced podocyte migration	13
Cherish JB, a unique journal that originated from Japan	13
CdbC: a disulfide bond isomerase involved in the refolding of mycoloyltransferases in Corynebacterium glutamicum cells exposed to oxidative conditions	13
Production and characterization of an Fv-clasp of rheumatoid factor, a low-affinity human autoantibody	12
The scaffold protein PDZK1 governs diurnal localization of CNT2 on the plasma membrane in mouse intestinal epithelial cells	12
Inhibitory effect of ascorbate on tryptophan 2,3-dioxygenase	11
Clomipramine inhibits dynamin GTPase activity by L-α-phosphatidyl-L-serine stimulation	11

Distinctive physical properties of DNA shared by RNA polymerase II gene promoters and 5′-flanking regions of tRNA genes	11
Structural and biochemical analyses of the nucleosome containing Komagataella pastoris histones	10
Identification and characterization of a serine racemase in the silkworm Bombyx mori	10
Diurnal shift of mouse activity by the deficiency of an ageing-related gene Lmna	10
Distribution and evolution of the serine/aspartate racemase family in invertebrates. II. Frequent and widespread parallel evolution of aspartate racemase	10
GlcNAc-Asn is a biomarker for NGLY1 deficiency	10
Development of cisplatin resistance in breast cancer MCF7 cells by up-regulating aldo-keto reductase 1C3 expression, glutathione synthesis and proteasomal proteolysis	9
Novel synthetic biological study on intracellular distribution of human GlcNAc-1-phosphotransferase expressed in insect cells	9
Thanking All Peer Reviewers	9
VP1 of human and murine noroviruses recognizes glycolipid sulfatide via the P domain	9
Targeted protein degradation and drug discovery	9
Novel small synthetic HIV-1 V3 crown variants: CCR5 targeting ligands	9
PCYT2 synthesizes CDP-glycerol in mammals and reduced PCYT2 enhances the expression of functionally glycosylated α-dystroglycan	9
The anti-inflammatory and anti-oxidative effect of a classical hypnotic bromovalerylurea mediated by the activation of NRF2	9
Sex chromosome cycle as a mechanism of stable sex determination	9
MAB21L4 regulates the TGF-β-induced expression of target genes in epidermal keratinocytes	9
nudt7 gene depletion causes transcriptomic change in early development of zebrafish	9
An inexpensive, simple and effective method of genome DNA fragmentation for NGS libraries	9
Phosphorylated SARM1 is involved in the pathological process of rotenone-induced neurodegeneration	9
Full-length prion protein incorporated into prion aggregates is a marker for prion strain-specific destabilization of aggregate structure following cellular uptake	8
Trans-scale thermal signaling in biological systems	8
Identification of the active site and characterization of a novel sporulation-specific cysteine protease YabG fromBacillus subtilis	8
BACH to the ferroptosis	8
Circ_0000514 promotes breast cancer progression by regulating the miR-296-5p/CXCL10 axis	8
Cutting-edge skin ageing research on tissue stem cell	8
Merlin/NF2 regulates SLC7A11/xCT expression and cell viability under glucose deprivation at high cell density in glioblastoma cells	8
Effects of eyestalk ablation and seawater temperature on d-glutamate levels in the reproductive tissues of male kuruma prawn Marsupenaeus japonicus	8
Apolipoprotein M supports S1P production and conservation and mediates prolonged Akt activation via S1PR1 and S1PR3	7
Hoop-like role of the cytosolic interface helix in Vibrio PomA, an ion-conducting membrane protein, in the bacterial flagellar motor	7
Biochemical characterizations of the central fragment of human Reelin and identification of amino acid residues involved in its secretion	7
The action of coenzyme B12-dependent diol dehydratase on 3,3,3-trifluoro-1,2-propanediol results in elimination of all the fluorides with formation of acetaldehyde	7
Transmembrane protein 168 mutation reduces cardiomyocyte cell surface expression of Nav1.5 through αB-crystallin intracellular dynamics	7
Toward a high-resolution mechanism of intrinsically disordered protein self-assembly	7
Variations associated with neurodevelopmental disorders affect ARF1 function and cortical development	7
The NRF2 inducer CDDO-2P-Im provokes a reduction in amyloid β levels in Alzheimer’s disease model mice	7
Ever-expanding NGLY1 biology	7
SI-MOIRAI: a new method to identify and quantify the metabolic fate of nucleotides	7
Salivary neopterin and related pterins: their comparison to those in plasma and changes in individuals	7
Amino acid residues responsible for the different pH dependency of cell-specific ferredoxins in the electron transfer reaction with ferredoxin-NADP+ reductase from maize leaves	7
Identification of APBB1 as a substrate for anaplastic lymphoma kinase	6
Adipose tissue thermogenesis by calcium futile cycling	6
Production of CA125 with Tn antigens using a glycosylphosphatidylinositol anchoring system	6
Identification of effective CCR2 inhibitors for cancer therapy using humanized mice	6
Morphinan Evolution: The Impact of Advances in Biochemistry and Molecular Biology	6
Degradation of glycosylinositol phosphoceramide during plant tissue homogenization	6
CEBPB is required for NRF2-mediated drug resistance in NRF2-activated non-small cell lung cancer cells	6
Effects of genetic polymorphisms on the sulfation of doxorubicin by human SULT1C4 allozymes	6
Dermatan sulphate is an activating ligand of anaplastic lymphoma kinase	6
Transcriptomic characterization of Lonrf1 at the single-cell level under pathophysiological conditions	6
Interaction between a fluoroquinolone derivative and RNAs with a single bulge	6

Interaction mapping between nucleoporins in the fission yeast Schizosaccharomyces pombe using mass-spectrometry	6
The incorporation of extracellular vesicle markers varies among vesicles with distinct surface charges	6
Structural insights into the rational design of a nanobody that binds with high affinity to the SARS-CoV-2 spike variant	6
Cell engineering for the production of hybrid-type N-glycans in HEK293 cells	6
Nascent chain-mediated translation regulation in bacteria: translation arrest and intrinsic ribosome destabilization	5
The 2024 JB Reviewer Award	5
Ubiquitin-dependent rapid degradation conceals a cell-protective function of cytoplasmic SIRT3 against oxidative stress	5
Functional diversity of senescent cells in driving ageing phenotypes and facilitating tissue regeneration	5
The JB Award	5
Dephosphorylation of NFAT by Calcineurin inhibits Skp2-mediated degradation	5
Correction to: Branched ubiquitin code: from basic biology to targeted protein degradation	5
Mannose oligosaccharide recognition of CGL1, a mannose-specific lectin containing DM9 motifs from Crassostrea gigas, revealed by X-ray crystallographic analysis	5
Evolution and properties of alanine racemase from Synechocystis sp. PCC6803	5
Supplementation of essential amino acids suppresses age-associated sleep loss and sleep fragmentation but not loss of rhythm strength under yeast-restricted malnutrition in Drosophila	5
Purification and characterization of protease M, a yeast mitochondrial nucleotide-stimulated metal protease: its identification as CYM1 gene product, a mitochondrial presequence peptidase	5
The crystal structure of D-amino acid oxidase with a substrate analog, o-aminobenzoate	5
The circadian clock and cancer: links between circadian disruption and disease Pathology	5
Reactive oxygen species are associated with the inhibitory effect of N-(4-hydroxyphenyl)-retinamide on the entry of the severe acute respiratory syndrome-coronavirus 2	5
Phosphorylation/dephosphorylation of PTP-PEST at Serine 39 is crucial for cell migration	5
Effect of N1-methyladenosine in the quantification of RNA	5
Cellular senescence: mechanisms and relevance to cancer and aging	5
The JB Reviewer Award	5
Thanking All Peer Reviewers	5
Polyamines produced by an extreme thermophile are essential for cell growth at high temperature	4
Fifty years of Protein Data Bank in the Journal of Biochemistry	4
The Journal of Biochemistry: 100 years of excellence in scientific publishing	4
Dietary methionine functions in proliferative zone maintenance and egg production via sams-1 in Caenorhabditis elegans	4
Molecular connections between circadian clock and health/ageing	4
MiR-142-5p promotes retinoblastoma cell proliferation, migration and invasion by targeting PTEN	4
Membrane traffic governs the STING inflammatory signalling	4
Formation of hierarchical assemblies by collagen peptides derived from fish skin and bladder and their subsequent application as antiperoxide agents in lipid-rich food	4
Comprehensive analysis of non-selective and selective autophagy in yeast atg mutants and characterization of autophagic activity in the absence of the Atg8 conjugation system	4
SdrR, a LysR-type regulator, responds to the mycobacterial antioxidant defense	4
Multi-dimensional condensation of intracellular biomolecules	4
Identification and characterization of bioactive metabolites of 12-hydroxyheptadecatrienoic acid, a ligand for leukotriene B4 receptor 2	4
Comparative Analysis of Site-Specific N-glycosylation of LAMP1 from Breast Cancer Tissues	4
Land-breaking publications and the impact of these publications in several research areas: commentary for the 100th anniversary of Journal of Biochemistry	4
Forty years of the structure of plant-type ferredoxin	4
Effects of cryptochrome-modulating compounds on circadian behavioural rhythms in zebrafish	4
Structure-specific DNA endonuclease T7 endonuclease I cleaves DNA containing UV-induced DNA lesions	4
The Largest Subunit of Human TFIIIC Complex, TFIIIC220, a Lysine Acetyltransferase Targets Histone H3K18	4
Access and utilization of host-derived iron by Leishmania parasites	4
Structural basis for the linkage specificity of ubiquitin-binding domain and deubiquitinase	4
Identification and biochemical characterization of a heteromeric cis-prenyltransferase from the thermophilic archaeon Archaeoglobus fulgidus	4
The role of TREM2 N-glycans in trafficking to the cell surface and signal transduction of TREM2	4
Branched ubiquitin code: from basic biology to targeted protein degradation	4
NGLY1: insights from Caenorhabditis elegans	4
Selection and characterization of aptamers targeting the Vif-CBFβ-ELOB-ELOC-CUL5 complex	4
Recent topics regarding macrophage in the central nervous system	4
Open and closed structures of L-arginine oxidase by cryo-electron microscopy and X-ray crystallography	4
Binding profile of quinonoid-dihydrobiopterin to quinonoid-dihydropteridine reductase examined by in silico and in vitro analyses	4
Differential interactions of α-synuclein conformers affect refolding and activity of proteins	3
Bcl2l12, a novel protein interacting with Arf6, triggers Schwann cell differentiation programme	3
Cardiac remodeling: novel pathophysiological mechanisms and therapeutic strategies	3
Perturbed collagen metabolism underlies lymphatic recanalization failure in Gata2 heterozygous deficient mice	3
Structural insights into the substrate specificity of IMP-6 and IMP-1 metallo-β-lactamases	3
Activation of platelet-derived growth factor receptors regulate connective tissue growth factor protein levels via the AKT pathway in malignant mesothelioma cells	3
Relationships between protein degradation, cellular senescence, and organismal aging	3
Intracellular acidification and glycolysis modulate inflammatory pathway in senescent cells	3
A leaderless mRNA including tRNA-like sequence encodes a small peptide that regulates the expression of GcvB small RNA inEscherichia coli	3
SSB promotes DnaB helicase passage through DnaA complexes at the replication origin oriC for bidirectional replication	3
Characterization of recombinant murine GDE4 and GDE7, enzymes producing lysophosphatidic acid and/or cyclic phosphatidic acid	3
Plasmodium falciparum metacaspase-2 capture its natural substrate in a non-canonical way	3
Direct binding of calmodulin to the cytosolic C-terminal regions of sweet/umami taste receptors	3
Cloaking the ACE2 receptor with salivary cationic proteins inhibits SARS-CoV-2 entry	3
Kolaflavanone, a biflavonoid derived from medicinal plantGarcinia, is an inhibitor of mitotic kinesin Eg5	3
(Pro)renin receptor and insulin signalling regulate cell proliferation in MCF-7 breast cancer cells	3
Retinoic acid stimulates transcription of the rat SHARP-2 gene via multiple pathways	3
New insights into the regulation and roles of phosphatidylinositol 3,4-bisphosphate	3
A refined method for high-purity isolation of uterine glandular epithelial cells in mouse	3
Japonica Array NEO with increased genome-wide coverage and abundant disease risk SNPs	3
Calpain-3 not only proteolyzes calpain-1 and -2 but also is a substrate for calpain-1 and -2	3
An oscillating magnetic field suppresses ice-crystal growth during rapid freezing of muscle tissue of mice	3
Molecular structure and function of mysterin/RNF213	3
PLAAT1 expression triggers fragmentation of mitochondria in an enzyme activity-dependent manner	3
Protein homeostasis and degradation in quiescent neural stem cells	3
Involvement of cardiac glycosides targeting Na/K-ATPase in their inhibitory effects on c-Myc expression via its transcription, translation and proteasomal degradation	3
TT-pocket/HIRAN: binding to 3′-terminus of DNA for recognition and processing of stalled replication forks	3
Supercomplex formation of mitochondrial respiratory chain complexes in leukocytes from patients with neurodegenerative diseases	3
Intracellular biliverdin dynamics during ferroptosis	3

Repeat-associated non-AUG translation in neuromuscular diseases: mechanisms and therapeutic insights	3
Ectopic BH3-only protein Bim acts as a cochaperone to positively regulate Hsp70 in yeast	3
Emerging solvatochromic push–pull dyes for monitoring the lipid order of biomembranes in live cells	3
Ubiquitin-mediated mitochondrial regulation by MITOL/MARCHF5 at a glance	2
Erylysin A inhibits cytokinesis in Escherichia coli by binding with cardiolipin	2
LUBAC-mediated linear ubiquitination in tissue homeostasis and disease	2
Tracing the NGLY1 footprints: insights from Drosophila	2
The cofactors and domains of a staphylococcal capsule-producing enzyme preserve its structure, stability, shape and dimerization ability	2
Basis for diurnal exacerbation of neuropathic pain hypersensitivity and its application for drug development	2
CircRPPH1 promotes cell proliferation, migration and invasion of non-small cell lung cancer via the PI3K/AKT and JAK2/STAT3 signalling axes	2
Structural and biochemical elements of efficiently degradable proteasome substrates	2
Nicotinamide-N-methyltransferase regulates lipid metabolism via SAM and 1-methylnicotinamide in the AML12 hepatocyte cell line	2
Biochemical characterization of the RNA-binding and RNA–DNA strand exchange activities of the human RAD52 protein	2
A novel peptide isolated from Catla skin collagen acts as a self-assembling scaffold promoting nucleation of calcium-deficient hydroxyapatite nanocrystals	2
Genome-wide distribution of 5hmC in the dental pulp of mouse molars and incisors	2
Investigation of serum markers of esophageal squamous cell carcinoma based on machine learning methods	2
Acetylation of MLH1 by CBP increases cellular DNA mismatch repair activity	2
The stability of NPM1 oligomers regulated by acidic disordered regions controls the quality of liquid droplets	2
Mitochondria-targeting siRNA screening identifies mitochondrial calcium uniporter as a factor involved in nucleoid morphology	2
A lipid scramblase TMEM41B is involved in the processing and transport of GPI-anchored proteins	2
Unusual aggregation property of recombinantly expressed cancer-testis antigens in mammalian cells	2
Structure of the Acinetobacter baumannii PmrA receiver domain and insights into clinical mutants affecting DNA binding and promoting colistin resistance	2
Exploring protein lipidation by mass spectrometry-based proteomics	2
Structural insight into the recognition of the linear ubiquitin assembly complex by Shigella E3 ligase IpaH1.4/2.5	2
Neutral selection and clonal expansion during the development of colon cancer metastasis	2
Extracellular histones promote calcium phosphate-dependent calcification in mouse vascular smooth muscle cells	2
Acute exposure of minimally oxLDL elicits survival responses by downregulating the mediators of NLRP3 inflammasome in cultured RAW 264.7 macrophages	2
Characterization of KDM5 lysine demethylase family substrate preference and identification of novel substrates	2
Fond Memories of Professor Sen-itiroh Hakomori	2
A circular RNA derived from FAT atypical cadherin 3 promotes lung cancer progression via forming a regulatory loop with oncogenic ELAV like RNA binding protein 1	2
Correction to: Characterization of the enzymatic properties of human RNPEPL1/aminopeptidase Z	2
Characterization of Staphylococcus aureus RecX protein: Molecular insights into negative regulation of RecA protein and implications in HR processes	2
Classification of proteins inducing liquid–liquid phase separation: sequential, structural and functional characterization	2
Onnamide A suppresses the severe acute respiratory syndrome-coronavirus 2 infection without inhibiting 3-chymotrypsin-like cysteine protease	2
Long non-coding RNA AFAP1-AS1 promotes thyroid cancer progression by sponging miR-204-3p and upregulating DUSP4	2
Proline-rich transmembrane protein 2 knock-in mice present dopamine-dependent motor deficits	2
Maintenance of the Golgi ribbon structure by the KASH protein Jaw1	2
Effect of an intermolecular disulfide bond introduced into the first loop of CH1 domain of Adalimumab Fab on thermal stability and antigen-binding activity	2
Collagen isolated from human adipose tissue and its cellular affinity	2
Structural basis for molecular interactions on the eukaryotic DNA sliding clamps PCNA and RAD9-RAD1-HUS1	2
Inter-domain interaction of ferredoxin-NADP+ reductase important for the negative cooperativity by ferredoxin and NADP(H)	2
Spatial heterogeneity and functional zonation of living tissues and organs in situ	2
Chondroitin sulfate glycosaminoglycans function as extra/pericellular ligands for cell surface receptors	2
Multimerization of small G-protein H-Ras induced by chemical modification at hyper variable region with caged compound	2
The protein level of the tumour-promoting factor SET is regulated by cell density	2
Effects of Ca2+ ions on the horseshoe crab coagulation cascade triggered by lipopolysaccharide	2
The E-Id axis specifies adaptive and innate lymphoid lineage cell fates	2
GPLD1+ cancer stem cells contribute to chemotherapy resistance and tumour relapse in intestinal cancer	2
Reform of Journal of Biochemistry	2
Mechanisms that regulate the production of secondary siRNAs in plants	2
Escherichia coli tRNA (Gm18) methyltransferase (TrmH) requires the correct localization of its methylation site (G18) in the D-loop for efficient methylation	2
Identification of unannotated coding sequences and their physiological functions	2
Crystal structure of endocrine-disrupting chemical bisphenol A and estrogen-related receptor γ	2
GPCR signaling bias: an emerging framework for opioid drug development	2
Cryo-EM and biochemical analyses of the nucleosome containing the human histone H3 variant H3.8	2
Evaluation of the cyclic single-chain Fv antibody derived from nivolumab by biophysical analyses and in vitro cell-based bioassay	2
DA-Raf and the MEK inhibitor trametinib reverse skeletal myocyte differentiation inhibition or muscle atrophy caused by myostatin and GDF11 through the non-Smad Ras–ERK pathway	2
The protein N-terminal acetyltransferase A complex contributes to yeast mitophagy via promoting expression and phosphorylation of Atg32	2
Identification and characterization of a novel haemolytic and haemagglutinating bifunctional lectin from the coral Acropora millepora	2
Photocontrol of small GTPase Ras fused with a photoresponsive protein	2
Long noncoding RNA and phase separation in cellular stress response	2
p62 bodies: cytosolic zoning by phase separation	2
Structural insights into endothelin receptor signalling	1
Overexpression and characterization of Escherichia coli dihydropyrimidine dehydrogenase: a four iron-sulphur cluster containing flavoprotein	1
A crucial stem cell plasticity regulation pathway: identification of key elements using the NCCIT human embryonic carcinoma cell line	1
Physiological importance of NGLY1, as revealed by rodent model analyses	1
ETV4 mediates the Wnt/β-catenin pathway through transcriptional activation of ANXA2 to promote hepatitis B virus-associated liver hepatocellular carcinoma progression	1
Exploring Diverse Signaling Mechanisms of G Protein-Coupled Receptors through Structural Biology	1
MiR-133a-3p inhibits the malignant progression of oesophageal cancer by targeting CDCA8	1
Rethinking c-Fos for understanding drug action in the brain	1
Correction to: The Hox-based positional memory in muscle stem cells	1
Erratum	1
PPARα activation partially drives NAFLD development in liver-specific Hnf4a-null mice	1
CRABP2 promotes cell migration and invasion by activating PI3K/AKT and MAPK signalling pathways via upregulating LAMB3 in prostate cancer	1
Hybrid molecule between platanic acid and LCL-161 as a yes-associated protein degrader	1
Chondroitin sulfate liposome: clustering toward high functional efficiency	1
Shaping transverse-tubules: central mechanisms that play a role in the cytosol zoning for muscle contraction	1
The Nuclear Cap-Binding Complex, a multitasking binding partner of RNA polymerase II transcripts	1
Therapeutic strategies targeting cellular senescence for cancer and other diseases	1
Lysine Acetyltransferases (KATs) in Disguise: Diseases Implications	1
Commentary for: a lipid scramblase TMEM41B is involved in the processing and transport of GPI-anchored proteins	1
A mutant equipped with a regenerated disulphide for the missing His loop of a serine protease zymogen in the horseshoe crab coagulation cascade	1
Functional analysis of the N-terminal region of Vibrio FlhG, a MinD-type ATPase in flagellar number control	1
Heme oxygenase-1 induction by heat shock in rat hepatoma cell line is regulated by the coordinated function of HSF1, NRF2 and BACH1	1
Efficient DNA/RNA extraction from tarsal plates by SK mill, a freeze-crush apparatus	1
Exploring the roles of Lem2 and Bqt4 in lipid metabolism for nuclear envelope maintenance: a novel perspective	1
The dedicated chaperones of eL43, Puf6 and Loc1 can also bind RPL43 mRNA and regulate the production of this ribosomal protein	1
Elastolytic activity is associated with inflammation in bladder cancer	1
Cancer-associated mutations in SF3B1 disrupt the interaction between SF3B1 and DDX42	1
Construction of a T7 phage random peptide library by combining seamless cloning with in vitro translation	1
Transglutaminase mediates the hardening of fish egg envelope produced by duplication of factor XIIIA gene during the evolution of Teleostei	1
Jaw1/LRMP is associated with the maintenance of Golgi ribbon structure	1
A mixing microfluidic chip for real-time NMR monitoring of macromolecular reactions	1
pH-regulated chaperone function of cyanobacterial Hsp90 and Hsp70: implications for light/dark regulation	1
Into the matrix: current methods for mitochondrial translation studies	1