Journal of Biochemistry

Article	Citations
Erratum to: Structural insights into the enhanced thermostability of cysteine substitution mutants of L-histidine decarboxylase from Photobacterium phosphoreum	25
RMST: a long noncoding RNA involved in cancer and disease	21
Interaction between a fluoroquinolone derivative and RNAs with a single bulge	19
CdbC: a disulfide bond isomerase involved in the refolding of mycoloyltransferases in Corynebacterium glutamicum cells exposed to oxidative conditions	19
Production and characterization of an Fv-clasp of rheumatoid factor, a low-affinity human autoantibody	19
Microglia regulate neuronal and behavioural functions under physiological and pathological conditions	18
The action of coenzyme B12-dependent diol dehydratase on 3,3,3-trifluoro-1,2-propanediol results in elimination of all the fluorides with formation of acetaldehyde	18
Transcriptomic characterization of Lonrf1 at the single-cell level under pathophysiological conditions	17
Variations associated with neurodevelopmental disorders affect ARF1 function and cortical development	17
ZNRF1-dependent regulation of AKT activity modulates Nav subcellular localization and AIS position in neurons to regulate fear-related behaviour	16
Putrescine Biosynthesis from Agmatine by Arginase (TtARG) in Thermus thermophilus	16
Cellular senescence in the cancer microenvironment	16
Identification of the active site and characterization of a novel sporulation-specific cysteine protease YabG fromBacillus subtilis	15
Phosphorylation/dephosphorylation of PTP-PEST at Serine 39 is crucial for cell migration	14
Molecular connections between circadian clock and health/ageing	14
Land-breaking publications and the impact of these publications in several research areas: commentary for the 100th anniversary of Journal of Biochemistry	14
PLAAT1 expression triggers fragmentation of mitochondria in an enzyme activity-dependent manner	14
BACH to the ferroptosis	14
The Journal of Biochemistry: 100 years of excellence in scientific publishing	14
A refined method for high-purity isolation of uterine glandular epithelial cells in mouse	14
Intracellular biliverdin dynamics during ferroptosis	13
Perturbed collagen metabolism underlies lymphatic recanalization failure in Gata2 heterozygous deficient mice	13
Direct binding of calmodulin to the cytosolic C-terminal regions of sweet/umami taste receptors	13
Effects of cryptochrome-modulating compounds on circadian behavioural rhythms in zebrafish	13
SdrR, a LysR-type regulator, responds to the mycobacterial antioxidant defense	13

Formation of hierarchical assemblies by collagen peptides derived from fish skin and bladder and their subsequent application as antiperoxide agents in lipid-rich food	13
Calpain-3 not only proteolyzes calpain-1 and -2 but also is a substrate for calpain-1 and -2	12
A leaderless mRNA including tRNA-like sequence encodes a small peptide that regulates the expression of GcvB small RNA inEscherichia coli	12
SSB promotes DnaB helicase passage through DnaA complexes at the replication origin oriC for bidirectional replication	12
Characterization of recombinant murine GDE4 and GDE7, enzymes producing lysophosphatidic acid and/or cyclic phosphatidic acid	12
Forty years of the structure of plant-type ferredoxin	11
The potential of erythrocyte α-synuclein to differentiate dementia with Lewy bodies from Parkinson’s and Alzheimer’s diseases	11
Genome-wide distribution of 5hmC in the dental pulp of mouse molars and incisors	11
Suicide substrate reaction-like modification of mouse serine racemase with L-serine	11
Collagen isolated from human adipose tissue and its cellular affinity	11
Method for isolation and quantification of inositol glycan produced by glycosylinositol phosphoceramide-hydrolysing phospholipase D in plants	11
Sensitive immunoassay ofLegionellausing multivalent conjugates of engineered VHHs	10
The crystal structure of the small zinc-finger protein ZifS from Thermus thermophilus HB8	10
Onnamide A suppresses the severe acute respiratory syndrome-coronavirus 2 infection without inhibiting 3-chymotrypsin-like cysteine protease	10
CRABP2 promotes cell migration and invasion by activating PI3K/AKT and MAPK signalling pathways via upregulating LAMB3 in prostate cancer	10
Upregulated mGluR5 induces ER stress and DNA damage by regulating the NMDA receptor subunit NR2B	10
Identification of unannotated coding sequences and their physiological functions	10
Acquisition mechanism of heme oxygenase-1 induction by heat shock in human monocytic cell line THP-1 after differentiation to macrophage-like cells	10
Commentary for: a lipid scramblase TMEM41B is involved in the processing and transport of GPI-anchored proteins	10
Correction to: The Hox-based positional memory in muscle stem cells	10
Neutral selection and clonal expansion during the development of colon cancer metastasis	10
Mitochondria-targeting siRNA screening identifies mitochondrial calcium uniporter as a factor involved in nucleoid morphology	10
Exploring the roles of Lem2 and Bqt4 in lipid metabolism for nuclear envelope maintenance: a novel perspective	10
Chondroitin sulfate liposome: clustering toward high functional efficiency	9
Correction to: Molecular Mechanism of Autophagy, Cytoplasmic Zoning by Lipid Membranes	9
Mitochondria–giant lipid droplet proximity and autophagy suppression in nitrogen-depleted oleaginous yeast Lipomyces starkeyi cells	9
Trehalose decreases mRNA and protein expressions of c-Jun and JunB in human cervical cancer HeLa cells	9
CDC42 missense mutations and human diseases: from neurodevelopmental disorders to autoinflammation	9
Erratum to: Structural insights into the enhanced thermostability of cysteine substitution mutants of L-histidine decarboxylase from Photobacterium phosphoreum	9
The 2024 JB Award	9
Post-translational modification of lysine residues in erythrocyte α-synuclein	9
Comprehensive identification of proteins interacting with long non-coding RNA TUG1 in R-loop regulation	9
Cytoplasmic zoning in membrane blebs	9
Sialyl-Tn antigen facilitates extracellular vesicle-mediated transfer of FAK and enhances motility of recipient cells	9
Profiling translation in the nervous system	9
Characterization of recombinant photoconverting green fluorescent Akanes	9
Phosphatidylinositol-Specific Phospholipase C Across Biological Kingdoms: Domain Organization, Functions, and Regulation	8
Analysis of ribonucleotide content in the genomic DNA of ribonuclease H2 A subunit (RH2A)-knockout NIH3T3 cells after transient expression of wild-type RH2A or RH2A variants with an Aicardi–Goutières	8
A retrospect of the structure determination of Taka-amylase A	8
vp1524, a Vibrio parahaemolyticus NAD +-dependent deacetylase, regulates host response during infection by induction of host histone deacetylation	8
Molecular mechanisms of mechanosensing and plasticity of tendons and ligaments	8
γ-Secretase structure and activity are modified by alterations in its membrane localization and ambient environment	8
Effective plasmid delivery to a plasmid-free Bacillus natto strain by a conjugational transfer system	8
Notch signaling pathway induces expression of type IV collagen in angiogenesis	8
Histone H2B isoform H2bc27 is expressed in the developing brain of mouse embryos	8
Multiple interfaces to recognize nucleosomal targets	8
Oligomeric state of the aspartate:alanine transporter from Tetragenococcus halophilus	8
Bisecting GlcNAc modification of angiotensin-related glycoproteins in mouse kidney	8
Inhibition of autophagy by Atg7 knockdown enhances chemosensitivity in gemcitabine/paclitaxel-resistant pancreatic cancer MIAPaCa2 cells	7
Biochemical characterization and mutational analysis of lysophosphatidic acid acyltransferases of Escherichia coli highlighting their involvement in the generation of membrane phospholipid dive	7

Hoop-like role of the cytosolic interface helix in Vibrio PomA, an ion-conducting membrane protein, in the bacterial flagellar motor	7
Direct visualization of ribosomes in the cell-free system revealed the functional evolution of aminoglycoside	7
Autophagy-independent cytoprotection by optineurin from toxicity of aggregates formed by mutant huntingtin and mutant ataxin-3	7
Inner nuclear membrane proteins Lem2 and Bqt4 interact with different lipid synthesis enzymes in fission yeast	7
The NRF2 inducer CDDO-2P-Im provokes a reduction in amyloid β levels in Alzheimer’s disease model mice	7
Visualization of Reelin Secretion from Primary Cultured Neurons by Bioluminescence Imaging	7
Development of supercooling preservation method of adherent cultured human cells	7
Biochemical characterization of medaka (Oryzias latipes) fibrinogen gamma and its gene disruption resulting in anemia as a model fish	7
Correction to: Branched ubiquitin code: from basic biology to targeted protein degradation	6
Supplementation of essential amino acids suppresses age-associated sleep loss and sleep fragmentation but not loss of rhythm strength under yeast-restricted malnutrition in Drosophila	6
Correction to: Innate immune signals triggered on organelle membranes	6
Long noncoding RNAs transcribed downstream of the human β-globin locus regulate β-globin gene expression	6
Phosphorylated SARM1 is involved in the pathological process of rotenone-induced neurodegeneration	6
Merlin/NF2 regulates SLC7A11/xCT expression and cell viability under glucose deprivation at high cell density in glioblastoma cells	6
GlcNAc-Asn is a biomarker for NGLY1 deficiency	6
Branched ubiquitin code: from basic biology to targeted protein degradation	6
Binding profile of quinonoid-dihydrobiopterin to quinonoid-dihydropteridine reductase examined by in silico and in vitro analyses	6
Thanking All Peer Reviewers	6
Ever-expanding NGLY1 biology	6
Novel synthetic biological study on intracellular distribution of human GlcNAc-1-phosphotransferase expressed in insect cells	6
Recent topics regarding macrophage in the central nervous system	6
Protein homeostasis and degradation in quiescent neural stem cells	6
NGLY1: insights from Caenorhabditis elegans	6
Evolution and properties of alanine racemase from Synechocystis sp. PCC6803	6
Morphinan Evolution: The Impact of Advances in Biochemistry and Molecular Biology	6
Corrigendum to: BaeR participates in cephalosporins susceptibility by regulating the expression level of outer membrane proteins in Escherichia coli	6
CEBPB is required for NRF2-mediated drug resistance in NRF2-activated non-small cell lung cancer cells	6
Cellular senescence: mechanisms and relevance to cancer and aging	5
The cofactors and domains of a staphylococcal capsule-producing enzyme preserve its structure, stability, shape and dimerization ability	5
Patient-derived gene and protein expression signatures of NGLY1 deficiency	5
Structural insight into the recognition of the linear ubiquitin assembly complex by Shigella E3 ligase IpaH1.4/2.5	5
Effect of an intermolecular disulfide bond introduced into the first loop of CH1 domain of Adalimumab Fab on thermal stability and antigen-binding activity	5
Cryo-electron microscopy reveals the impact of the nucleosome dynamics on transcription activity	5
Targeting senescent cells for the treatment of age-associated diseases	5
A lipid scramblase TMEM41B is involved in the processing and transport of GPI-anchored proteins	5
Maintenance of the Golgi ribbon structure by the KASH protein Jaw1	5
Investigation of serum markers of esophageal squamous cell carcinoma based on machine learning methods	5
Photocontrol of small GTPase Ras fused with a photoresponsive protein	5
Crystallographic studies of cytochrome c and cytochrome c oxidase	5
JB: A cradle for young Japanese biochemists	5
Long non-coding RNA AFAP1-AS1 promotes thyroid cancer progression by sponging miR-204-3p and upregulating DUSP4	5
Structural basis for molecular interactions on the eukaryotic DNA sliding clamps PCNA and RAD9-RAD1-HUS1	5
Spatial heterogeneity and functional zonation of living tissues and organs in situ	5
Dissection of an ABC transporter LolCDE function analyzed by photo-crosslinking	5
Chondroitin sulfate glycosaminoglycans function as extra/pericellular ligands for cell surface receptors	5
Cellular senescence and its impact on the circadian clock	5
Human TRPV1 and TRPA1 are receptors for bacterial quorum sensing molecules	5
Ubiquitin-mediated mitochondrial regulation by MITOL/MARCHF5 at a glance	5
Response to acute hyperglycemia and high fructose in cultured tenocytes	4
Hydrogen bonds connecting the N-terminal region and the DE loop stabilize the monomeric structure of transthyretin	4
Essential dextrin structure as donor substrate for 4-α-glucanotransferase in glycogen debranching enzyme	4
Identification of two critical amino acid residues in short-chain aldehyde-responsive odorant receptors	4
Expression of Concern: Circ_0000190 sponges miR-382-5p to suppress cell proliferation and motility and promote cell death by targeting ZNRF3 in gastric cancer	4
Corrigendum to: Escherichia coli amino acid auxotrophic expression host strains for investigating protein structure-function relationships	4
Interaction between a fluoroquinolone derivative KG022 and RNAs: effect of the bulged residues	4
Analysis of thermostability for seven Phe to Ala and six Pro to Gly mutants in the Fab constant region of adalimumab	4
Thermostability optimization of the aspartate/alanine exchange transporter from Tetragenococcus halophilus	4
Ciliary length variations impact cilia-mediated signaling and biological responses	4
Lidocaine relieves spinal cord ischemia–reperfusion injury via long non-coding RNA MIAT-mediated Notch1 downregulation	4
UNC5B is an isoform-dependent target for ectodomain shedding	4
Mtc6/Ehg2 is a novel endoplasmic reticulum-resident glycoprotein essential for high-pressure tolerance	4
Cytoplasmic zoning by protein phase transition after membrane permeabilization	4
Commentary for The Incorporation of Extracellular Vesicle Markers Varies Among Vesicles with Distinct Surface Charges	4
Inhibition of Sirt2 Decreases ApoE Secretion in Astrocytes and Microglial Cells	4
Photocontrol of the small GTPase Ras using its regulatory factor, GTPase-activating protein, modified with photochromic nanodevices	4
Formation of the NLRP3 inflammasome inhibits stress granule assembly by multiple mechanisms	4
Differential use of p24 family members as cargo receptors for the transport of glycosylphosphatidylinositol-anchored proteins and Wnt1	4
Basic structure and cytocompatibility of giant membrane vesicles derived from paraformaldehyde-exposed human cells	4
Senso-immunology: the past, present, and future	4
The molecular mechanisms of mammalian sperm maturation regulated by NELL2-ROS1 lumicrine signaling	4
Structural insights into the enhanced thermostability of cysteine substitution mutants of L-histidine decarboxylase from Photobacterium phosphoreum	4
Reactive oxygen species are associated with the inhibitory effect of N-(4-hydroxyphenyl)-retinamide on the entry of the severe acute respiratory syndrome-coronavirus 2	3
Amino acid residues responsible for the different pH dependency of cell-specific ferredoxins in the electron transfer reaction with ferredoxin-NADP+ reductase from maize leaves	3
The HP1 hinge region: more than just a linker for heterochromatin	3
Screening of α-amino acid ester acyl transferase variant with improved activity by combining rational and random mutagenesis	3
Proofreading of protein localization mediated by a mitochondrial AAA-ATPase Msp1	3
NMR analysis of interaction between RNA structure elements and small molecules	3
Generation of endoplasmic reticulum stress-dependent reactive oxygen species mediates TGF-β1-induced podocyte migration	3
Epitope-dependent thermodynamic signature of single-domain antibodies against hen egg lysozyme	3
Mitochondria metabolomics reveals a role of β-nicotinamide mononucleotide metabolism in mitochondrial DNA replication	3

Distribution and evolution of the serine/aspartate racemase family in invertebrates. II. Frequent and widespread parallel evolution of aspartate racemase	3
Cloning and characterization of Thioredoxin 1 from the Cnidarian Hydra	3
Ubiquitin-dependent rapid degradation conceals a cell-protective function of cytoplasmic SIRT3 against oxidative stress	3
Open and closed structures of L-arginine oxidase by cryo-electron microscopy and X-ray crystallography	3
MAB21L4 regulates the TGF-β-induced expression of target genes in epidermal keratinocytes	3
Commentary on ‘Structural insights into a bacterial β-glucosidase capable of degrading sesaminol triglucoside to produce sesaminol: towards the understanding of the aglycone recognition mechanism by t	3
Neural stem cell-specific deficiency of (pro)renin receptor causes brain malformation and perinatal lethality in mice	3
In situ digestion of alcohol-fixed cells for quantitative proteomics	3
Decreased EMILIN2 correlates to metabolism phenotype and poor prognosis of ovarian cancer	3
Ferroptosis model system by the re-expression of BACH1	3
A novel O-GlcNAcylation at threonine 71 of histone H4 is a component of heterochromatin	3
The 2023 JB Reviewer Award	3
Comprehensive analysis of non-selective and selective autophagy in yeast atg mutants and characterization of autophagic activity in the absence of the Atg8 conjugation system	3
Comparative Analysis of Site-Specific N-glycosylation of LAMP1 from Breast Cancer Tissues	3
Comprehensive characterization of the interaction between prototypical drug-site markers and multiple sites on human serum albumin by microbore frontal gel chromatography	3
Degradation of glycosylinositol phosphoceramide during plant tissue homogenization	3
The 2024 JB Reviewer Award	3
Mechanisms of mitochondrial reorganization	3
Towards the in vivo identification of protein–protein interactions	3
2,2,6,6-Tetramethylpiperidine-1-oxyl acts as a volatile inhibitor of ferroptosis and neurological injury	3
Structural and biochemical analyses of the nucleosome containing Komagataella pastoris histones	3
Two-sided function of osteopontin during osteoblast differentiation	3
Identification of APBB1 as a substrate for anaplastic lymphoma kinase	3
The tumor promoter 12-O-tetradecanoylphorbol-13-acetate suppresses cell proliferation in metastatic melanoma through TC-PTP/PTPN2 and SH-PTP2/PTPN11	3
TT-pocket/HIRAN: binding to 3′-terminus of DNA for recognition and processing of stalled replication forks	3
Efficient DNA/RNA extraction from tarsal plates by SK mill, a freeze-crush apparatus	2
NRF2 pathway activation attenuates ageing-related renal phenotypes due to α-klotho deficiency	2
Non-triple helical form of type IV collagen alpha1 chain suppresses vascular endothelial-cadherin mediated cell-to-cell junctions	2
The JB Award	2
Thermodynamic stability of human lipocalin-type prostaglandin D synthase under various pH conditions	2
Exploring protein lipidation by mass spectrometry-based proteomics	2
The JB Reviewer Award	2
Thanking All Peer Reviewers	2
Rethinking c-Fos for understanding drug action in the brain	2
Multi-dimensional condensation of intracellular biomolecules	2
Capn4 aggravates angiotensin II-induced cardiac hypertrophy by activating the IGF-AKT signalling pathway	2
Commentary on: Direct binding of calmodulin to the cytosolic C-terminal regions of sweet/umami taste receptors	2
Identification and biochemical characterization of a heteromeric cis-prenyltransferase from the thermophilic archaeon Archaeoglobus fulgidus	2
Repeat-associated non-AUG translation in neuromuscular diseases: mechanisms and therapeutic insights	2
Inhibitory machinery for the functional dystroglycan glycosylation	2
Erratum	2
Interaction of FlhF, SRP-like GTPase with FliF, MS ring component assembling the initial structure of flagella in marine Vibrio	2
Cancer-associated SF3B1 mutations inhibit mRNA nuclear export by disrupting SF3B1–THOC5 interactions	2
Reform of Journal of Biochemistry	2
Erratum	2
Evaluation of the cyclic single-chain Fv antibody derived from nivolumab by biophysical analyses and in vitro cell-based bioassay	2
The Nuclear Cap-Binding Complex, a multitasking binding partner of RNA polymerase II transcripts	2
Molecular structure and function of mysterin/RNF213	2
Valosin-containing protein mediates DNA-dependent protein kinase activation in response to DNA topoisomerase II-associated DNA double-strand breaks	2
Supercomplex formation of mitochondrial respiratory chain complexes in leukocytes from patients with neurodegenerative diseases	2
Real-time monitoring of polyacrylamide gel electrophoresis by the shadowgraph technique	2
Three glutamic acid residues in the cytoplasmic N-terminal tail of long-form GlcAT-P define Golgi-to-ER trafficking	2
Structural basis for the linkage specificity of ubiquitin-binding domain and deubiquitinase	2
Distribution and role of d-glutamate, a novel d-amino acid identified in animals, in the reproductive tissues of male kuruma prawn Marsupenaeus japonicus	2
Identification of a novel Eps 15 homology domain-containing protein 1 (EHD1) and EHD4-binding motif in phostensin	2
Inhibition of human glutathione transferase by catechin and gossypol: comparative structural analysis by kinetic properties, molecular docking and their efficacy on the viability of human MCF-7 cells	2
Molecular Mechanism of Autophagy, Cytoplasmic Zoning by Lipid Membranes	2
Carbohydrate-binding ability of a recombinant protein containing the DM9 motif from Drosophila melanogaster	2
Multimerization of small G-protein H-Ras induced by chemical modification at hyper variable region with caged compound	2
C-terminal truncation is a prominent post-translational modification of human erythrocyte α-synuclein	2
Inter-domain interaction of ferredoxin-NADP+ reductase important for the negative cooperativity by ferredoxin and NADP(H)	2
Lysine Acetyltransferases (KATs) in Disguise: Diseases Implications	2
Nicotinamide-N-methyltransferase regulates lipid metabolism via SAM and 1-methylnicotinamide in the AML12 hepatocyte cell line	2
Cancer-associated mutations in SF3B1 disrupt the interaction between SF3B1 and DDX42	2
Adipose tissue thermogenesis by calcium futile cycling	2
Crystal structure of Tam41 cytidine diphosphate diacylglycerol synthase from a Firmicutes bacterium	2
Maintaining a neutral range disperses myosin molecules under salt-free conditions	2
Polyamines produced by an extreme thermophile are essential for cell growth at high temperature	2
New insights into the regulation and roles of phosphatidylinositol 3,4-bisphosphate	2
DA-Raf and the MEK inhibitor trametinib reverse skeletal myocyte differentiation inhibition or muscle atrophy caused by myostatin and GDF11 through the non-Smad Ras–ERK pathway	1
Endogenous reductase activities for the generation of ribitol-phosphate, a CDP-ribitol precursor, in mammals	1
Escherichia coli tRNA (Gm18) methyltransferase (TrmH) requires the correct localization of its methylation site (G18) in the D-loop for efficient methylation	1
Production of non-triple-helical collagen polypeptides under hypoxia and the implication for tumour	1
PPARα activation partially drives NAFLD development in liver-specific Hnf4a-null mice	1
Physiological importance of NGLY1, as revealed by rodent model analyses	1
Age-related alterations in protein phosphatase 2A methylation levels in brains of cynomolgus monkeys: a pilot study	1
Acute exposure of minimally oxLDL elicits survival responses by downregulating the mediators of NLRP3 inflammasome in cultured RAW 264.7 macrophages	1
The E-Id axis specifies adaptive and innate lymphoid lineage cell fates	1
Characterization of Staphylococcus aureus RecX protein: Molecular insights into negative regulation of RecA protein and implications in HR processes	1
Mechanisms that regulate the production of secondary siRNAs in plants	1
Long noncoding RNA and phase separation in cellular stress response	1
Shaping transverse-tubules: central mechanisms that play a role in the cytosol zoning for muscle contraction	1
Epigenetic and environmental regulation of adipocyte function	1
Evolutionary implications from lipids in membrane bilayers and photosynthetic complexes in cyanobacteria and chloroplasts	1
Thanking all peer reviewers	1
Fond Memories of Professor Sen-itiroh Hakomori	1
Proline-rich transmembrane protein 2 knock-in mice present dopamine-dependent motor deficits	1
Acetylation of MLH1 by CBP increases cellular DNA mismatch repair activity	1
Crystal structure of endocrine-disrupting chemical bisphenol A and estrogen-related receptor γ	1
Characterization of KDM5 lysine demethylase family substrate preference and identification of novel substrates	1
Mitochondrial DNA: leakage, recognition and associated human diseases	1
Relationships between protein degradation, cellular senescence, and organismal aging	1
Homo-trimeric structure of the ribonuclease for rRNA processing, FAU-1, from Pyrococcus furiosus	1
Direct and indirect roles of GRWD1 in the inactivation of p53 in cancer	1
Structural and biochemical elements of efficiently degradable proteasome substrates	1