Journal of Biochemistry

Article	Citations
SI-MOIRAI: a new method to identify and quantify the metabolic fate of nucleotides	45
BACH to the ferroptosis	29
Erratum to: Structural insights into the enhanced thermostability of cysteine substitution mutants of L-histidine decarboxylase from Photobacterium phosphoreum	22
Putrescine Biosynthesis from Agmatine by Arginase (TtARG) in Thermus thermophilus	20
Identification of the active site and characterization of a novel sporulation-specific cysteine protease YabG fromBacillus subtilis	19
Cellular senescence in the cancer microenvironment	18
CdbC: a disulfide bond isomerase involved in the refolding of mycoloyltransferases in Corynebacterium glutamicum cells exposed to oxidative conditions	17
Production and characterization of an Fv-clasp of rheumatoid factor, a low-affinity human autoantibody	17
Transcriptomic characterization of Lonrf1 at the single-cell level under pathophysiological conditions	17
The action of coenzyme B12-dependent diol dehydratase on 3,3,3-trifluoro-1,2-propanediol results in elimination of all the fluorides with formation of acetaldehyde	16
Microglia regulate neuronal and behavioural functions under physiological and pathological conditions	15
Variations associated with neurodevelopmental disorders affect ARF1 function and cortical development	15
RMST: a long noncoding RNA involved in cancer and disease	15
Phosphorylation/dephosphorylation of PTP-PEST at Serine 39 is crucial for cell migration	14
Interaction between a fluoroquinolone derivative and RNAs with a single bulge	14
Dermatan sulphate is an activating ligand of anaplastic lymphoma kinase	14
ZNRF1-dependent regulation of AKT activity modulates Nav subcellular localization and AIS position in neurons to regulate fear-related behaviour	14
Calpain-3 not only proteolyzes calpain-1 and -2 but also is a substrate for calpain-1 and -2	13
A refined method for high-purity isolation of uterine glandular epithelial cells in mouse	13
The Journal of Biochemistry: 100 years of excellence in scientific publishing	13
A leaderless mRNA including tRNA-like sequence encodes a small peptide that regulates the expression of GcvB small RNA inEscherichia coli	13
Land-breaking publications and the impact of these publications in several research areas: commentary for the 100th anniversary of Journal of Biochemistry	13
SSB promotes DnaB helicase passage through DnaA complexes at the replication origin oriC for bidirectional replication	12
Molecular connections between circadian clock and health/ageing	12
PLAAT1 expression triggers fragmentation of mitochondria in an enzyme activity-dependent manner	12

Effects of cryptochrome-modulating compounds on circadian behavioural rhythms in zebrafish	12
Direct binding of calmodulin to the cytosolic C-terminal regions of sweet/umami taste receptors	11
Intracellular biliverdin dynamics during ferroptosis	11
Formation of hierarchical assemblies by collagen peptides derived from fish skin and bladder and their subsequent application as antiperoxide agents in lipid-rich food	11
Perturbed collagen metabolism underlies lymphatic recanalization failure in Gata2 heterozygous deficient mice	11
Characterization of recombinant murine GDE4 and GDE7, enzymes producing lysophosphatidic acid and/or cyclic phosphatidic acid	10
Method for isolation and quantification of inositol glycan produced by glycosylinositol phosphoceramide-hydrolysing phospholipase D in plants	10
Identification of unannotated coding sequences and their physiological functions	10
The potential of erythrocyte α-synuclein to differentiate dementia with Lewy bodies from Parkinson’s and Alzheimer’s diseases	10
Forty years of the structure of plant-type ferredoxin	10
Genome-wide distribution of 5hmC in the dental pulp of mouse molars and incisors	10
Neutral selection and clonal expansion during the development of colon cancer metastasis	10
SdrR, a LysR-type regulator, responds to the mycobacterial antioxidant defense	10
Collagen isolated from human adipose tissue and its cellular affinity	10
Suicide substrate reaction-like modification of mouse serine racemase with L-serine	10
Onnamide A suppresses the severe acute respiratory syndrome-coronavirus 2 infection without inhibiting 3-chymotrypsin-like cysteine protease	10
Cytoplasmic zoning in membrane blebs	9
Mitochondria-targeting siRNA screening identifies mitochondrial calcium uniporter as a factor involved in nucleoid morphology	9
Commentary for: a lipid scramblase TMEM41B is involved in the processing and transport of GPI-anchored proteins	9
Upregulated mGluR5 induces ER stress and DNA damage by regulating the NMDA receptor subunit NR2B	9
Chondroitin sulfate liposome: clustering toward high functional efficiency	9
The crystal structure of the small zinc-finger protein ZifS from Thermus thermophilus HB8	9
ETV4 mediates the Wnt/β-catenin pathway through transcriptional activation of ANXA2 to promote hepatitis B virus-associated liver hepatocellular carcinoma progression	9
Correction to: The Hox-based positional memory in muscle stem cells	9
Regulation of polyphosphate glucokinase gene expression through cotranscriptional processing in Mycobacterium tuberculosis H37Rv	9
Exploring the roles of Lem2 and Bqt4 in lipid metabolism for nuclear envelope maintenance: a novel perspective	9
Acquisition mechanism of heme oxygenase-1 induction by heat shock in human monocytic cell line THP-1 after differentiation to macrophage-like cells	9
Sensitive immunoassay ofLegionellausing multivalent conjugates of engineered VHHs	9
Heme oxygenase-1 induction by heat shock in rat hepatoma cell line is regulated by the coordinated function of HSF1, NRF2 and BACH1	9
Sialyl-Tn antigen facilitates extracellular vesicle-mediated transfer of FAK and enhances motility of recipient cells	9
CDC42 missense mutations and human diseases: from neurodevelopmental disorders to autoinflammation	8
vp1524, a Vibrio parahaemolyticus NAD +-dependent deacetylase, regulates host response during infection by induction of host histone deacetylation	8
CRABP2 promotes cell migration and invasion by activating PI3K/AKT and MAPK signalling pathways via upregulating LAMB3 in prostate cancer	8
Erratum to: Structural insights into the enhanced thermostability of cysteine substitution mutants of L-histidine decarboxylase from Photobacterium phosphoreum	8
Correction to: Molecular Mechanism of Autophagy, Cytoplasmic Zoning by Lipid Membranes	8
Characterization of recombinant photoconverting green fluorescent Akanes	7
Profiling translation in the nervous system	7
Histone H2B isoform H2bc27 is expressed in the developing brain of mouse embryos	7
A retrospect of the structure determination of Taka-amylase A	7
A slight bending of an α-helix in FliM creates a counterclockwise-locked structure of the flagellar motor in Vibrio	7
Mitochondria–giant lipid droplet proximity and autophagy suppression in nitrogen-depleted oleaginous yeast Lipomyces starkeyi cells	7
Trehalose decreases mRNA and protein expressions of c-Jun and JunB in human cervical cancer HeLa cells	7
Molecular mechanisms of mechanosensing and plasticity of tendons and ligaments	7
Visualization of Reelin Secretion from Primary Cultured Neurons by Bioluminescence Imaging	7
Effective plasmid delivery to a plasmid-free Bacillus natto strain by a conjugational transfer system	7
The 2024 JB Award	7
Post-translational modification of lysine residues in erythrocyte α-synuclein	7
Multiple interfaces to recognize nucleosomal targets	7
Analysis of ribonucleotide content in the genomic DNA of ribonuclease H2 A subunit (RH2A)-knockout NIH3T3 cells after transient expression of wild-type RH2A or RH2A variants with an Aicardi–Goutières	7
Notch signaling pathway induces expression of type IV collagen in angiogenesis	7

Direct visualization of ribosomes in the cell-free system revealed the functional evolution of aminoglycoside	6
γ-Secretase structure and activity are modified by alterations in its membrane localization and ambient environment	6
Thanking All Peer Reviewers	6
CEBPB is required for NRF2-mediated drug resistance in NRF2-activated non-small cell lung cancer cells	6
Oligomeric state of the aspartate:alanine transporter from Tetragenococcus halophilus	6
Inhibition of autophagy by Atg7 knockdown enhances chemosensitivity in gemcitabine/paclitaxel-resistant pancreatic cancer MIAPaCa2 cells	6
Biochemical characterization of medaka (Oryzias latipes) fibrinogen gamma and its gene disruption resulting in anemia as a model fish	6
Morphinan Evolution: The Impact of Advances in Biochemistry and Molecular Biology	6
Ever-expanding NGLY1 biology	6
Biochemical characterization and mutational analysis of lysophosphatidic acid acyltransferases of Escherichia coli highlighting their involvement in the generation of membrane phospholipid dive	6
Inner nuclear membrane proteins Lem2 and Bqt4 interact with different lipid synthesis enzymes in fission yeast	6
Hoop-like role of the cytosolic interface helix in Vibrio PomA, an ion-conducting membrane protein, in the bacterial flagellar motor	6
Corrigendum to: BaeR participates in cephalosporins susceptibility by regulating the expression level of outer membrane proteins in Escherichia coli	6
Long noncoding RNAs transcribed downstream of the human β-globin locus regulate β-globin gene expression	6
Development of supercooling preservation method of adherent cultured human cells	6
The NRF2 inducer CDDO-2P-Im provokes a reduction in amyloid β levels in Alzheimer’s disease model mice	6
Autophagy-independent cytoprotection by optineurin from toxicity of aggregates formed by mutant huntingtin and mutant ataxin-3	6
Targeting senescent cells for the treatment of age-associated diseases	5
Spatial heterogeneity and functional zonation of living tissues and organs in situ	5
The cofactors and domains of a staphylococcal capsule-producing enzyme preserve its structure, stability, shape and dimerization ability	5
Long non-coding RNA AFAP1-AS1 promotes thyroid cancer progression by sponging miR-204-3p and upregulating DUSP4	5
Recent topics regarding macrophage in the central nervous system	5
Evolution and properties of alanine racemase from Synechocystis sp. PCC6803	5
PCYT2 synthesizes CDP-glycerol in mammals and reduced PCYT2 enhances the expression of functionally glycosylated α-dystroglycan	5
Correction to: Branched ubiquitin code: from basic biology to targeted protein degradation	5
Investigation of serum markers of esophageal squamous cell carcinoma based on machine learning methods	5
Photocontrol of small GTPase Ras fused with a photoresponsive protein	5
Dissection of an ABC transporter LolCDE function analyzed by photo-crosslinking	5
Structural basis for molecular interactions on the eukaryotic DNA sliding clamps PCNA and RAD9-RAD1-HUS1	5
Maintenance of the Golgi ribbon structure by the KASH protein Jaw1	5
Protein homeostasis and degradation in quiescent neural stem cells	5
Kolaflavanone, a biflavonoid derived from medicinal plantGarcinia, is an inhibitor of mitotic kinesin Eg5	5
Merlin/NF2 regulates SLC7A11/xCT expression and cell viability under glucose deprivation at high cell density in glioblastoma cells	5
Novel synthetic biological study on intracellular distribution of human GlcNAc-1-phosphotransferase expressed in insect cells	5
Branched ubiquitin code: from basic biology to targeted protein degradation	5
Cellular senescence: mechanisms and relevance to cancer and aging	5
Patient-derived gene and protein expression signatures of NGLY1 deficiency	5
Effect of an intermolecular disulfide bond introduced into the first loop of CH1 domain of Adalimumab Fab on thermal stability and antigen-binding activity	5
A lipid scramblase TMEM41B is involved in the processing and transport of GPI-anchored proteins	5
Phosphorylated SARM1 is involved in the pathological process of rotenone-induced neurodegeneration	5
Supplementation of essential amino acids suppresses age-associated sleep loss and sleep fragmentation but not loss of rhythm strength under yeast-restricted malnutrition in Drosophila	5
GlcNAc-Asn is a biomarker for NGLY1 deficiency	5
NGLY1: insights from Caenorhabditis elegans	5
Binding profile of quinonoid-dihydrobiopterin to quinonoid-dihydropteridine reductase examined by in silico and in vitro analyses	5
Crystallographic studies of cytochrome c and cytochrome c oxidase	4
Hydrogen bonds connecting the N-terminal region and the DE loop stabilize the monomeric structure of transthyretin	4
Inhibition of Sirt2 Decreases ApoE Secretion in Astrocytes and Microglial Cells	4
Structural insights into the enhanced thermostability of cysteine substitution mutants of L-histidine decarboxylase from Photobacterium phosphoreum	4
Analysis of thermostability for seven Phe to Ala and six Pro to Gly mutants in the Fab constant region of adalimumab	4
Formation of the NLRP3 inflammasome inhibits stress granule assembly by multiple mechanisms	4
MiR-133a-3p inhibits the malignant progression of oesophageal cancer by targeting CDCA8	4
Cryo-electron microscopy reveals the impact of the nucleosome dynamics on transcription activity	4
Chondroitin sulfate glycosaminoglycans function as extra/pericellular ligands for cell surface receptors	4
JB: A cradle for young Japanese biochemists	4
Essential dextrin structure as donor substrate for 4-α-glucanotransferase in glycogen debranching enzyme	4
Ciliary length variations impact cilia-mediated signaling and biological responses	4
Basic structure and cytocompatibility of giant membrane vesicles derived from paraformaldehyde-exposed human cells	4
Cellular senescence and its impact on the circadian clock	4
Ubiquitin-mediated mitochondrial regulation by MITOL/MARCHF5 at a glance	4
Structural insight into the recognition of the linear ubiquitin assembly complex by Shigella E3 ligase IpaH1.4/2.5	4
Lidocaine relieves spinal cord ischemia–reperfusion injury via long non-coding RNA MIAT-mediated Notch1 downregulation	4
Identification of two critical amino acid residues in short-chain aldehyde-responsive odorant receptors	4
Karyopherin-βs play a key role as a phase separation regulator	4
Photocontrol of the small GTPase Ras using its regulatory factor, GTPase-activating protein, modified with photochromic nanodevices	4
Human TRPV1 and TRPA1 are receptors for bacterial quorum sensing molecules	4
Screening of α-amino acid ester acyl transferase variant with improved activity by combining rational and random mutagenesis	3
Response to acute hyperglycemia and high fructose in cultured tenocytes	3
Corrigendum to: Escherichia coli amino acid auxotrophic expression host strains for investigating protein structure-function relationships	3
Amino acid residues responsible for the different pH dependency of cell-specific ferredoxins in the electron transfer reaction with ferredoxin-NADP+ reductase from maize leaves	3
Structural basis for the linkage specificity of ubiquitin-binding domain and deubiquitinase	3
MAB21L4 regulates the TGF-β-induced expression of target genes in epidermal keratinocytes	3
Structural and biochemical analyses of the nucleosome containing Komagataella pastoris histones	3
An inexpensive, simple and effective method of genome DNA fragmentation for NGS libraries	3
Proofreading of protein localization mediated by a mitochondrial AAA-ATPase Msp1	3
Cloning and characterization of Thioredoxin 1 from the Cnidarian Hydra	3
Two-sided function of osteopontin during osteoblast differentiation	3
Expression of Concern: Circ_0000190 sponges miR-382-5p to suppress cell proliferation and motility and promote cell death by targeting ZNRF3 in gastric cancer	3
Differential use of p24 family members as cargo receptors for the transport of glycosylphosphatidylinositol-anchored proteins and Wnt1	3
Thermostability optimization of the aspartate/alanine exchange transporter from Tetragenococcus halophilus	3
Mechanisms of mitochondrial reorganization	3

Towards the in vivo identification of protein–protein interactions	3
Comparative Analysis of Site-Specific N-glycosylation of LAMP1 from Breast Cancer Tissues	3
Generation of endoplasmic reticulum stress-dependent reactive oxygen species mediates TGF-β1-induced podocyte migration	3
2,2,6,6-Tetramethylpiperidine-1-oxyl acts as a volatile inhibitor of ferroptosis and neurological injury	3
Reactive oxygen species are associated with the inhibitory effect of N-(4-hydroxyphenyl)-retinamide on the entry of the severe acute respiratory syndrome-coronavirus 2	3
Commentary on ‘Structural insights into a bacterial β-glucosidase capable of degrading sesaminol triglucoside to produce sesaminol: towards the understanding of the aglycone recognition mechanism by t	3
Ferroptosis model system by the re-expression of BACH1	3
Identification of APBB1 as a substrate for anaplastic lymphoma kinase	3
Epitope-dependent thermodynamic signature of single-domain antibodies against hen egg lysozyme	3
Cytoplasmic zoning by protein phase transition after membrane permeabilization	3
The molecular mechanisms of mammalian sperm maturation regulated by NELL2-ROS1 lumicrine signaling	3
NMR analysis of interaction between RNA structure elements and small molecules	3
In situ digestion of alcohol-fixed cells for quantitative proteomics	3
Ubiquitin-dependent rapid degradation conceals a cell-protective function of cytoplasmic SIRT3 against oxidative stress	3
The 2024 JB Reviewer Award	3
Distribution and evolution of the serine/aspartate racemase family in invertebrates. II. Frequent and widespread parallel evolution of aspartate racemase	3
Mtc6/Ehg2 is a novel endoplasmic reticulum-resident glycoprotein essential for high-pressure tolerance	3
Degradation of glycosylinositol phosphoceramide during plant tissue homogenization	3
Mitochondria metabolomics reveals a role of β-nicotinamide mononucleotide metabolism in mitochondrial DNA replication	3
The 2023 JB Reviewer Award	3
Decreased EMILIN2 correlates to metabolism phenotype and poor prognosis of ovarian cancer	3
The HP1 hinge region: more than just a linker for heterochromatin	3
Senso-immunology: the past, present, and future	3
Inhibitory machinery for the functional dystroglycan glycosylation	2
Interaction of FlhF, SRP-like GTPase with FliF, MS ring component assembling the initial structure of flagella in marine Vibrio	2
Efficient DNA/RNA extraction from tarsal plates by SK mill, a freeze-crush apparatus	2
Fragment-Based Drug Discovery forTrypanosoma bruceiGlycosylphosphatidylinositol-Specific Phospholipase C through Biochemical and WaterLOGSY-NMR Methods	2
Distribution and role of d-glutamate, a novel d-amino acid identified in animals, in the reproductive tissues of male kuruma prawn Marsupenaeus japonicus	2
Lemur tail kinase 1 (LMTK1) regulates the endosomal localization of β-secretase BACE1	2
Reform of Journal of Biochemistry	2
Valosin-containing protein mediates DNA-dependent protein kinase activation in response to DNA topoisomerase II-associated DNA double-strand breaks	2
Polyamines produced by an extreme thermophile are essential for cell growth at high temperature	2
Crystal structure of Tam41 cytidine diphosphate diacylglycerol synthase from a Firmicutes bacterium	2
Thermodynamic stability of human lipocalin-type prostaglandin D synthase under various pH conditions	2
Multi-dimensional condensation of intracellular biomolecules	2
Molecular Mechanism of Autophagy, Cytoplasmic Zoning by Lipid Membranes	2
TT-pocket/HIRAN: binding to 3′-terminus of DNA for recognition and processing of stalled replication forks	2
Inter-domain interaction of ferredoxin-NADP+ reductase important for the negative cooperativity by ferredoxin and NADP(H)	2
Rethinking c-Fos for understanding drug action in the brain	2
Evaluation of the cyclic single-chain Fv antibody derived from nivolumab by biophysical analyses and in vitro cell-based bioassay	2
Reflection	2
Thanking All Peer Reviewers	2
Lysine Acetyltransferases (KATs) in Disguise: Diseases Implications	2
Elastolytic activity is associated with inflammation in bladder cancer	2
Availability of aldo-keto reductase 1C3 and ATP-binding cassette B1 as therapeutic targets for alleviating paclitaxel resistance in breast cancer MCF7 cells	2
Real-time monitoring of polyacrylamide gel electrophoresis by the shadowgraph technique	2
Inhibition of human glutathione transferase by catechin and gossypol: comparative structural analysis by kinetic properties, molecular docking and their efficacy on the viability of human MCF-7 cells	2
Multimerization of small G-protein H-Ras induced by chemical modification at hyper variable region with caged compound	2
Cancer-associated SF3B1 mutations inhibit mRNA nuclear export by disrupting SF3B1–THOC5 interactions	2
Molecular structure and function of mysterin/RNF213	2
Protein phosphatase 6 promotes neurite outgrowth by promoting mTORC2 activity in N2a cells	2
The Nuclear Cap-Binding Complex, a multitasking binding partner of RNA polymerase II transcripts	2
New insights into the regulation and roles of phosphatidylinositol 3,4-bisphosphate	2
Carbohydrate-binding ability of a recombinant protein containing the DM9 motif from Drosophila melanogaster	2
Open and closed structures of L-arginine oxidase by cryo-electron microscopy and X-ray crystallography	2
Identification and biochemical characterization of a heteromeric cis-prenyltransferase from the thermophilic archaeon Archaeoglobus fulgidus	2
Cancer-associated mutations in SF3B1 disrupt the interaction between SF3B1 and DDX42	2
PhoP induces RyjB expression under acid stress in Escherichia coli	2
Nicotinamide-N-methyltransferase regulates lipid metabolism via SAM and 1-methylnicotinamide in the AML12 hepatocyte cell line	2
Down-regulation of ABCB1 by collateral sensitivity drugs reverses multidrug resistance and up-regulates enolase I	2
The JB Award	2
Msp1-mediated proofreading mechanism for localization of tail-anchored membrane proteins	2
Erratum	2
2-Oxoglutarate-dependent dioxygenases as oxygen sensors: their importance in health and disease	2
Exploring protein lipidation by mass spectrometry-based proteomics	2
NRF2 pathway activation attenuates ageing-related renal phenotypes due to α-klotho deficiency	2
Supercomplex formation of mitochondrial respiratory chain complexes in leukocytes from patients with neurodegenerative diseases	2
Non-triple helical form of type IV collagen alpha1 chain suppresses vascular endothelial-cadherin mediated cell-to-cell junctions	2
Adipose tissue thermogenesis by calcium futile cycling	2
The JB Reviewer Award	2
Erratum	2
Repeat-associated non-AUG translation in neuromuscular diseases: mechanisms and therapeutic insights	2
The SH3 binding site in front of the WH1 domain contributes to the membrane binding of the BAR domain protein endophilin A2	2
Comprehensive analysis of non-selective and selective autophagy in yeast atg mutants and characterization of autophagic activity in the absence of the Atg8 conjugation system	2
Capn4 aggravates angiotensin II-induced cardiac hypertrophy by activating the IGF-AKT signalling pathway	2
C-terminal truncation is a prominent post-translational modification of human erythrocyte α-synuclein	2
Nucleosome assembly protein 1 is a regulator of histone H1 acetylation	2
Identification of a novel Eps 15 homology domain-containing protein 1 (EHD1) and EHD4-binding motif in phostensin	2
CREG1 administration stimulates BAT thermogenesis and improves diet-induced obesity in mice	2