Journal of Biochemistry

Article	Citations
Erratum to: Structural insights into the enhanced thermostability of cysteine substitution mutants of L-histidine decarboxylase from Photobacterium phosphoreum	31
Identification of the active site and characterization of a novel sporulation-specific cysteine protease YabG fromBacillus subtilis	25
RMST: a long noncoding RNA involved in cancer and disease	20
CdbC: a disulfide bond isomerase involved in the refolding of mycoloyltransferases in Corynebacterium glutamicum cells exposed to oxidative conditions	19
Production and characterization of an Fv-clasp of rheumatoid factor, a low-affinity human autoantibody	19
Interaction between a fluoroquinolone derivative and RNAs with a single bulge	18
The action of coenzyme B12-dependent diol dehydratase on 3,3,3-trifluoro-1,2-propanediol results in elimination of all the fluorides with formation of acetaldehyde	18
Variations associated with neurodevelopmental disorders affect ARF1 function and cortical development	18
Microglia regulate neuronal and behavioural functions under physiological and pathological conditions	18
ZNRF1-dependent regulation of AKT activity modulates Nav subcellular localization and AIS position in neurons to regulate fear-related behaviour	17
BACH to the ferroptosis	16
Transcriptomic characterization of Lonrf1 at the single-cell level under pathophysiological conditions	16
Putrescine Biosynthesis from Agmatine by Arginase (TtARG) in Thermus thermophilus	15
Cellular senescence in the cancer microenvironment	15
Molecular connections between circadian clock and health/ageing	14
Land-breaking publications and the impact of these publications in several research areas: commentary for the 100th anniversary of Journal of Biochemistry	14
A refined method for high-purity isolation of uterine glandular epithelial cells in mouse	14
Phosphorylation/dephosphorylation of PTP-PEST at Serine 39 is crucial for cell migration	14
PLAAT1 expression triggers fragmentation of mitochondria in an enzyme activity-dependent manner	14
The Journal of Biochemistry: 100 years of excellence in scientific publishing	14
Direct binding of calmodulin to the cytosolic C-terminal regions of sweet/umami taste receptors	13
Intracellular biliverdin dynamics during ferroptosis	13
Formation of hierarchical assemblies by collagen peptides derived from fish skin and bladder and their subsequent application as antiperoxide agents in lipid-rich food	13
Perturbed collagen metabolism underlies lymphatic recanalization failure in Gata2 heterozygous deficient mice	13
SdrR, a LysR-type regulator, responds to the mycobacterial antioxidant defense	12

Characterization of recombinant murine GDE4 and GDE7, enzymes producing lysophosphatidic acid and/or cyclic phosphatidic acid	12
Effects of cryptochrome-modulating compounds on circadian behavioural rhythms in zebrafish	12
SSB promotes DnaB helicase passage through DnaA complexes at the replication origin oriC for bidirectional replication	12
Forty years of the structure of plant-type ferredoxin	12
A leaderless mRNA including tRNA-like sequence encodes a small peptide that regulates the expression of GcvB small RNA inEscherichia coli	12
Calpain-3 not only proteolyzes calpain-1 and -2 but also is a substrate for calpain-1 and -2	12
Neutral selection and clonal expansion during the development of colon cancer metastasis	11
Collagen isolated from human adipose tissue and its cellular affinity	11
Identification of unannotated coding sequences and their physiological functions	11
The potential of erythrocyte α-synuclein to differentiate dementia with Lewy bodies from Parkinson’s and Alzheimer’s diseases	11
Onnamide A suppresses the severe acute respiratory syndrome-coronavirus 2 infection without inhibiting 3-chymotrypsin-like cysteine protease	11
Genome-wide distribution of 5hmC in the dental pulp of mouse molars and incisors	11
Suicide substrate reaction-like modification of mouse serine racemase with L-serine	11
Acquisition mechanism of heme oxygenase-1 induction by heat shock in human monocytic cell line THP-1 after differentiation to macrophage-like cells	10
CRABP2 promotes cell migration and invasion by activating PI3K/AKT and MAPK signalling pathways via upregulating LAMB3 in prostate cancer	10
Method for isolation and quantification of inositol glycan produced by glycosylinositol phosphoceramide-hydrolysing phospholipase D in plants	10
Sensitive immunoassay ofLegionellausing multivalent conjugates of engineered VHHs	10
Upregulated mGluR5 induces ER stress and DNA damage by regulating the NMDA receptor subunit NR2B	10
Exploring the roles of Lem2 and Bqt4 in lipid metabolism for nuclear envelope maintenance: a novel perspective	10
Mitochondria-targeting siRNA screening identifies mitochondrial calcium uniporter as a factor involved in nucleoid morphology	10
Commentary for: a lipid scramblase TMEM41B is involved in the processing and transport of GPI-anchored proteins	10
Correction to: The Hox-based positional memory in muscle stem cells	10
The crystal structure of the small zinc-finger protein ZifS from Thermus thermophilus HB8	10
Sialyl-Tn antigen facilitates extracellular vesicle-mediated transfer of FAK and enhances motility of recipient cells	9
ETV4 mediates the Wnt/β-catenin pathway through transcriptional activation of ANXA2 to promote hepatitis B virus-associated liver hepatocellular carcinoma progression	9
Characterization of recombinant photoconverting green fluorescent Akanes	9
Chondroitin sulfate liposome: clustering toward high functional efficiency	9
Erratum to: Structural insights into the enhanced thermostability of cysteine substitution mutants of L-histidine decarboxylase from Photobacterium phosphoreum	9
Mitochondria–giant lipid droplet proximity and autophagy suppression in nitrogen-depleted oleaginous yeast Lipomyces starkeyi cells	9
Cytoplasmic zoning in membrane blebs	9
Comprehensive Identification of Proteins Interacting with Long Non-Coding RNA TUG1 in R-Loop Regulation	9
Correction to: Molecular Mechanism of Autophagy, Cytoplasmic Zoning by Lipid Membranes	9
CDC42 missense mutations and human diseases: from neurodevelopmental disorders to autoinflammation	9
The 2024 JB Award	8
Trehalose decreases mRNA and protein expressions of c-Jun and JunB in human cervical cancer HeLa cells	8
Multiple interfaces to recognize nucleosomal targets	8
Molecular mechanisms of mechanosensing and plasticity of tendons and ligaments	8
Notch signaling pathway induces expression of type IV collagen in angiogenesis	8
Histone H2B isoform H2bc27 is expressed in the developing brain of mouse embryos	8
Post-translational modification of lysine residues in erythrocyte α-synuclein	8
vp1524, a Vibrio parahaemolyticus NAD +-dependent deacetylase, regulates host response during infection by induction of host histone deacetylation	8
Profiling translation in the nervous system	8
Bisecting GlcNAc modification of angiotensin-related glycoproteins in mouse kidney	8
Biochemical characterization of medaka (Oryzias latipes) fibrinogen gamma and its gene disruption resulting in anemia as a model fish	7
Development of supercooling preservation method of adherent cultured human cells	7
Direct visualization of ribosomes in the cell-free system revealed the functional evolution of aminoglycoside	7
Autophagy-independent cytoprotection by optineurin from toxicity of aggregates formed by mutant huntingtin and mutant ataxin-3	7
Effective plasmid delivery to a plasmid-free Bacillus natto strain by a conjugational transfer system	7
Inner nuclear membrane proteins Lem2 and Bqt4 interact with different lipid synthesis enzymes in fission yeast	7
Inhibition of autophagy by Atg7 knockdown enhances chemosensitivity in gemcitabine/paclitaxel-resistant pancreatic cancer MIAPaCa2 cells	7

Hoop-like role of the cytosolic interface helix in Vibrio PomA, an ion-conducting membrane protein, in the bacterial flagellar motor	7
A retrospect of the structure determination of Taka-amylase A	7
Oligomeric state of the aspartate:alanine transporter from Tetragenococcus halophilus	7
Biochemical characterization and mutational analysis of lysophosphatidic acid acyltransferases of Escherichia coli highlighting their involvement in the generation of membrane phospholipid dive	7
Visualization of Reelin Secretion from Primary Cultured Neurons by Bioluminescence Imaging	7
The NRF2 inducer CDDO-2P-Im provokes a reduction in amyloid β levels in Alzheimer’s disease model mice	7
Analysis of ribonucleotide content in the genomic DNA of ribonuclease H2 A subunit (RH2A)-knockout NIH3T3 cells after transient expression of wild-type RH2A or RH2A variants with an Aicardi–Goutières	7
γ-Secretase structure and activity are modified by alterations in its membrane localization and ambient environment	7
Recent topics regarding macrophage in the central nervous system	6
Corrigendum to: BaeR participates in cephalosporins susceptibility by regulating the expression level of outer membrane proteins in Escherichia coli	6
Long noncoding RNAs transcribed downstream of the human β-globin locus regulate β-globin gene expression	6
GlcNAc-Asn is a biomarker for NGLY1 deficiency	6
Correction to: Branched ubiquitin code: from basic biology to targeted protein degradation	6
Evolution and properties of alanine racemase from Synechocystis sp. PCC6803	6
Binding profile of quinonoid-dihydrobiopterin to quinonoid-dihydropteridine reductase examined by in silico and in vitro analyses	6
Thanking All Peer Reviewers	6
Ever-expanding NGLY1 biology	6
CEBPB is required for NRF2-mediated drug resistance in NRF2-activated non-small cell lung cancer cells	6
Supplementation of essential amino acids suppresses age-associated sleep loss and sleep fragmentation but not loss of rhythm strength under yeast-restricted malnutrition in Drosophila	6
Novel synthetic biological study on intracellular distribution of human GlcNAc-1-phosphotransferase expressed in insect cells	6
Merlin/NF2 regulates SLC7A11/xCT expression and cell viability under glucose deprivation at high cell density in glioblastoma cells	6
Morphinan Evolution: The Impact of Advances in Biochemistry and Molecular Biology	6
Phosphorylated SARM1 is involved in the pathological process of rotenone-induced neurodegeneration	6
Correction to: Innate immune signals triggered on organelle membranes	6
NGLY1: insights from Caenorhabditis elegans	5
Branched ubiquitin code: from basic biology to targeted protein degradation	5
Investigation of serum markers of esophageal squamous cell carcinoma based on machine learning methods	5
Effect of an intermolecular disulfide bond introduced into the first loop of CH1 domain of Adalimumab Fab on thermal stability and antigen-binding activity	5
Cellular senescence and its impact on the circadian clock	5
Dissection of an ABC transporter LolCDE function analyzed by photo-crosslinking	5
Chondroitin sulfate glycosaminoglycans function as extra/pericellular ligands for cell surface receptors	5
Patient-derived gene and protein expression signatures of NGLY1 deficiency	5
Maintenance of the Golgi ribbon structure by the KASH protein Jaw1	5
A lipid scramblase TMEM41B is involved in the processing and transport of GPI-anchored proteins	5
Photocontrol of small GTPase Ras fused with a photoresponsive protein	5
Cellular senescence: mechanisms and relevance to cancer and aging	5
Hydrogen bonds connecting the N-terminal region and the DE loop stabilize the monomeric structure of transthyretin	5
Cryo-electron microscopy reveals the impact of the nucleosome dynamics on transcription activity	5
Targeting senescent cells for the treatment of age-associated diseases	5
JB: A cradle for young Japanese biochemists	5
Ubiquitin-mediated mitochondrial regulation by MITOL/MARCHF5 at a glance	5
The cofactors and domains of a staphylococcal capsule-producing enzyme preserve its structure, stability, shape and dimerization ability	5
Protein homeostasis and degradation in quiescent neural stem cells	5
Structural basis for molecular interactions on the eukaryotic DNA sliding clamps PCNA and RAD9-RAD1-HUS1	5
Structural insight into the recognition of the linear ubiquitin assembly complex by Shigella E3 ligase IpaH1.4/2.5	5
Human TRPV1 and TRPA1 are receptors for bacterial quorum sensing molecules	5
Crystallographic studies of cytochrome c and cytochrome c oxidase	5
Long non-coding RNA AFAP1-AS1 promotes thyroid cancer progression by sponging miR-204-3p and upregulating DUSP4	5
Spatial heterogeneity and functional zonation of living tissues and organs in situ	5
Thermostability optimization of the aspartate/alanine exchange transporter from Tetragenococcus halophilus	4
Analysis of thermostability for seven Phe to Ala and six Pro to Gly mutants in the Fab constant region of adalimumab	4
Identification of two critical amino acid residues in short-chain aldehyde-responsive odorant receptors	4
Response to acute hyperglycemia and high fructose in cultured tenocytes	4
The molecular mechanisms of mammalian sperm maturation regulated by NELL2-ROS1 lumicrine signaling	4
Cytoplasmic zoning by protein phase transition after membrane permeabilization	4
Mtc6/Ehg2 is a novel endoplasmic reticulum-resident glycoprotein essential for high-pressure tolerance	4
2,2,6,6-Tetramethylpiperidine-1-oxyl acts as a volatile inhibitor of ferroptosis and neurological injury	4
Photocontrol of the small GTPase Ras using its regulatory factor, GTPase-activating protein, modified with photochromic nanodevices	4
Ciliary length variations impact cilia-mediated signaling and biological responses	4
Essential dextrin structure as donor substrate for 4-α-glucanotransferase in glycogen debranching enzyme	4
Inhibition of Sirt2 Decreases ApoE Secretion in Astrocytes and Microglial Cells	4
Interaction between a fluoroquinolone derivative KG022 and RNAs: effect of the bulged residues	4
Corrigendum to: Escherichia coli amino acid auxotrophic expression host strains for investigating protein structure-function relationships	4
Epitope-dependent thermodynamic signature of single-domain antibodies against hen egg lysozyme	4
NMR analysis of interaction between RNA structure elements and small molecules	4
Lidocaine relieves spinal cord ischemia–reperfusion injury via long non-coding RNA MIAT-mediated Notch1 downregulation	4
Basic structure and cytocompatibility of giant membrane vesicles derived from paraformaldehyde-exposed human cells	4
Structural insights into the enhanced thermostability of cysteine substitution mutants of L-histidine decarboxylase from Photobacterium phosphoreum	4
Formation of the NLRP3 inflammasome inhibits stress granule assembly by multiple mechanisms	4
UNC5B is an isoform-dependent target for ectodomain shedding	4
Expression of Concern: Circ_0000190 sponges miR-382-5p to suppress cell proliferation and motility and promote cell death by targeting ZNRF3 in gastric cancer	4
Senso-immunology: the past, present, and future	4
Decreased EMILIN2 correlates to metabolism phenotype and poor prognosis of ovarian cancer	4
Differential use of p24 family members as cargo receptors for the transport of glycosylphosphatidylinositol-anchored proteins and Wnt1	4
The 2024 JB Reviewer Award	3
Commentary on ‘Structural insights into a bacterial β-glucosidase capable of degrading sesaminol triglucoside to produce sesaminol: towards the understanding of the aglycone recognition mechanism by t	3
Identification of APBB1 as a substrate for anaplastic lymphoma kinase	3
Two-sided function of osteopontin during osteoblast differentiation	3
Screening of α-amino acid ester acyl transferase variant with improved activity by combining rational and random mutagenesis	3
An inexpensive, simple and effective method of genome DNA fragmentation for NGS libraries	3

Generation of endoplasmic reticulum stress-dependent reactive oxygen species mediates TGF-β1-induced podocyte migration	3
Polyamines produced by an extreme thermophile are essential for cell growth at high temperature	3
Open and closed structures of L-arginine oxidase by cryo-electron microscopy and X-ray crystallography	3
Adipose tissue thermogenesis by calcium futile cycling	3
Reactive oxygen species are associated with the inhibitory effect of N-(4-hydroxyphenyl)-retinamide on the entry of the severe acute respiratory syndrome-coronavirus 2	3
Identification and biochemical characterization of a heteromeric cis-prenyltransferase from the thermophilic archaeon Archaeoglobus fulgidus	3
The 2023 JB Reviewer Award	3
Structural and biochemical analyses of the nucleosome containing Komagataella pastoris histones	3
Mechanisms of mitochondrial reorganization	3
Proofreading of protein localization mediated by a mitochondrial AAA-ATPase Msp1	3
In situ digestion of alcohol-fixed cells for quantitative proteomics	3
MAB21L4 regulates the TGF-β-induced expression of target genes in epidermal keratinocytes	3
Repeat-associated non-AUG translation in neuromuscular diseases: mechanisms and therapeutic insights	3
Comprehensive analysis of non-selective and selective autophagy in yeast atg mutants and characterization of autophagic activity in the absence of the Atg8 conjugation system	3
Ubiquitin-dependent rapid degradation conceals a cell-protective function of cytoplasmic SIRT3 against oxidative stress	3
Degradation of glycosylinositol phosphoceramide during plant tissue homogenization	3
The HP1 hinge region: more than just a linker for heterochromatin	3
Cloning and characterization of Thioredoxin 1 from the Cnidarian Hydra	3
Mitochondria metabolomics reveals a role of β-nicotinamide mononucleotide metabolism in mitochondrial DNA replication	3
Ferroptosis model system by the re-expression of BACH1	3
Towards the in vivo identification of protein–protein interactions	3
Amino acid residues responsible for the different pH dependency of cell-specific ferredoxins in the electron transfer reaction with ferredoxin-NADP+ reductase from maize leaves	3
Distribution and evolution of the serine/aspartate racemase family in invertebrates. II. Frequent and widespread parallel evolution of aspartate racemase	3
Multi-dimensional condensation of intracellular biomolecules	3
TT-pocket/HIRAN: binding to 3′-terminus of DNA for recognition and processing of stalled replication forks	3
Comparative Analysis of Site-Specific N-glycosylation of LAMP1 from Breast Cancer Tissues	3
Molecular structure and function of mysterin/RNF213	2
Valosin-containing protein mediates DNA-dependent protein kinase activation in response to DNA topoisomerase II-associated DNA double-strand breaks	2
New insights into the regulation and roles of phosphatidylinositol 3,4-bisphosphate	2
Structural basis for the linkage specificity of ubiquitin-binding domain and deubiquitinase	2
Real-time monitoring of polyacrylamide gel electrophoresis by the shadowgraph technique	2
Availability of aldo-keto reductase 1C3 and ATP-binding cassette B1 as therapeutic targets for alleviating paclitaxel resistance in breast cancer MCF7 cells	2
Cancer-associated mutations in SF3B1 disrupt the interaction between SF3B1 and DDX42	2
Inhibition of human glutathione transferase by catechin and gossypol: comparative structural analysis by kinetic properties, molecular docking and their efficacy on the viability of human MCF-7 cells	2
Interaction of FlhF, SRP-like GTPase with FliF, MS ring component assembling the initial structure of flagella in marine Vibrio	2
Thanking All Peer Reviewers	2
The SH3 binding site in front of the WH1 domain contributes to the membrane binding of the BAR domain protein endophilin A2	2
Erratum	2
Molecular Mechanism of Autophagy, Cytoplasmic Zoning by Lipid Membranes	2
Distribution and role of d-glutamate, a novel d-amino acid identified in animals, in the reproductive tissues of male kuruma prawn Marsupenaeus japonicus	2
The Nuclear Cap-Binding Complex, a multitasking binding partner of RNA polymerase II transcripts	2
Multimerization of small G-protein H-Ras induced by chemical modification at hyper variable region with caged compound	2
Carbohydrate-binding ability of a recombinant protein containing the DM9 motif from Drosophila melanogaster	2
Maintaining a neutral range disperses myosin molecules under salt-free conditions	2
The tumor promoter 12-O-tetradecanoylphorbol-13-acetate suppresses cell proliferation in metastatic melanoma through TC-PTP/PTPN2 and SH-PTP2/PTPN11	2
Exploring protein lipidation by mass spectrometry-based proteomics	2
Lysine Acetyltransferases (KATs) in Disguise: Diseases Implications	2
Msp1-mediated proofreading mechanism for localization of tail-anchored membrane proteins	2
NRF2 pathway activation attenuates ageing-related renal phenotypes due to α-klotho deficiency	2
Inter-domain interaction of ferredoxin-NADP+ reductase important for the negative cooperativity by ferredoxin and NADP(H)	2
Non-triple helical form of type IV collagen alpha1 chain suppresses vascular endothelial-cadherin mediated cell-to-cell junctions	2
The JB Award	2
Thermodynamic stability of human lipocalin-type prostaglandin D synthase under various pH conditions	2
Efficient DNA/RNA extraction from tarsal plates by SK mill, a freeze-crush apparatus	2
Crystal structure of Tam41 cytidine diphosphate diacylglycerol synthase from a Firmicutes bacterium	2
Evaluation of the cyclic single-chain Fv antibody derived from nivolumab by biophysical analyses and in vitro cell-based bioassay	2
Rethinking c-Fos for understanding drug action in the brain	2
Reform of Journal of Biochemistry	2
Three glutamic acid residues in the cytoplasmic N-terminal tail of long-form GlcAT-P define Golgi-to-ER trafficking	2
Supercomplex formation of mitochondrial respiratory chain complexes in leukocytes from patients with neurodegenerative diseases	2
Capn4 aggravates angiotensin II-induced cardiac hypertrophy by activating the IGF-AKT signalling pathway	2
Fragment-Based Drug Discovery forTrypanosoma bruceiGlycosylphosphatidylinositol-Specific Phospholipase C through Biochemical and WaterLOGSY-NMR Methods	2
Crystal structure of Klebsiella pneumoniae maltohexaose-producing α-amylase	2
C-terminal truncation is a prominent post-translational modification of human erythrocyte α-synuclein	2
Nicotinamide-N-methyltransferase regulates lipid metabolism via SAM and 1-methylnicotinamide in the AML12 hepatocyte cell line	2
Cancer-associated SF3B1 mutations inhibit mRNA nuclear export by disrupting SF3B1–THOC5 interactions	2
Inhibitory machinery for the functional dystroglycan glycosylation	2
Erratum	2
Identification of a novel Eps 15 homology domain-containing protein 1 (EHD1) and EHD4-binding motif in phostensin	2
The JB Reviewer Award	2