OOIR: Observatory of International Research

Papers

(The TQCC of Journal of Biochemistry is 5. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-05-01 to 2024-05-01.)

Article	Citations
CircRNA_0092516 regulates chondrocyte proliferation and apoptosis in osteoarthritis through the miR-337-3p/PTEN axis	38
LncRNA HCG18 contributes to the progression of hepatocellular carcinoma via miR-214-3p/CENPM axis	34
D-Amino acid metabolism in bacteria	34
Senescence-associated extracellular vesicle release plays a role in senescence-associated secretory phenotype (SASP) in age-associated diseases	30
Emerging solvatochromic push–pull dyes for monitoring the lipid order of biomembranes in live cells	29
Targeting EZH2 as cancer therapy	29
Exosomes derived from chronic lymphocytic leukaemia cells transfer miR-146a to induce the transition of mesenchymal stromal cells into cancer-associated fibroblasts	25
GTP metabolic reprogramming by IMPDH2: unlocking cancer cells’ fuelling mechanism	23
High glucose inhibits osteogenic differentiation of bone marrow mesenchymal stem cells via regulating miR-493-5p/ZEB2 signalling	23
circGFRA1 affects the sensitivity of triple-negative breast cancer cells to paclitaxel via the miR-361-5p/TLR4 pathway	22
miR-98-5p protects against cerebral ischemia/reperfusion injury through anti-apoptosis and anti-oxidative stress in mice	20
Emerging roles of phosphatidylinositol 4-phosphate and phosphatidylinositol 4,5-bisphosphate as regulators of multiple steps in autophagy	20
Upregulation of circ_0000142 promotes multiple myeloma progression by adsorbing miR-610 and upregulating AKT3 expression	20
Stimulation of exosome biogenesis by adiponectin, a circulating factor secreted from adipocytes	20
Down-regulation of lncRNA SNHG5 relieves sepsis-induced acute kidney injury by regulating the miR-374a-3p/TLR4/NF-κB pathway	18
Emerging roles of extracellular vesicles in physiology and disease	18
MiR-20a-5p overexpression prevented diabetic cardiomyopathy via inhibition of cardiomyocyte apoptosis, hypertrophy, fibrosis and JNK/NF-κB signalling pathway	18
Structural catalog of core Atg proteins opens new era of autophagy research	17
G-quadruplex binding protein Rif1, a key regulator of replication timing	17
Site-specific epitope insertion into recombinant proteins using the MAP tag system	16
A dynamic actin-dependent nucleoskeleton and cell identity	16
Long non-coding RNA ABHD11-AS1 boosts gastric cancer development by regulating miR-361-3p/PDPK1 signalling	16
Japonica Array NEO with increased genome-wide coverage and abundant disease risk SNPs	16
Sweet modification and regulation of death receptor signalling pathway	16
Circular RNA hsa_circ_0102231 sponges miR-145 to promote non-small cell lung cancer cell proliferation by up-regulating the expression of RBBP4	16

Impact of exosome-mediated feto-maternal interactions on pregnancy maintenance and development of obstetric complications	15
Posttranscriptional modifications in mitochondrial tRNA and its implication in mitochondrial translation and disease	15
Regulation of Reelin functions by specific proteolytic processing in the brain	15
The nucleolus from a liquid droplet perspective	15
Targeting Nrf2-antioxidant signalling reverses acquired cabazitaxel resistance in prostate cancer cells	15
GlcNAc-Asn is a biomarker for NGLY1 deficiency	14
The apelin/APJ system in the regulation of vascular tone: friend or foe?	14
NRF2 pathway activation attenuates ageing-related renal phenotypes due to α-klotho deficiency	14
Linker DNA and histone contributions in nucleosome binding by p53	14
Long non-coding RNA DANCR accelerates colorectal cancer progression via regulating the miR-185-5p/HMGA2 axis	14
CEBPB is required for NRF2-mediated drug resistance in NRF2-activated non-small cell lung cancer cells	13
Circ_0000190 sponges miR-382-5p to suppress cell proliferation and motility and promote cell death by targeting ZNRF3 in gastric cancer	13
SARS-CoV-2 spike protein binding selectively accelerates substrate-specific catalytic activity of ACE2	13
Potential roles of G-quadruplex structures in RNA granules for physiological and pathological phase separation	12
Multiple structural states of Ca2+-regulated PET hydrolase, Cut190, and its correlation with activity and stability	12
Non-electrophilic TRPA1 agonists, menthol, carvacrol and clotrimazole, open epithelial tight junctions via TRPA1 activation	12
Biochemical properties of human full-length aryl hydrocarbon receptor (AhR)	12
The disulfiram/copper complex induces apoptosis and inhibits tumour growth in human osteosarcoma by activating the ROS/JNK signalling pathway	12
Long noncoding RNA and phase separation in cellular stress response	12
Branched ubiquitin code: from basic biology to targeted protein degradation	11
Long non-coding RNA PHACTR2-AS1 promotes tongue squamous cell carcinoma metastasis by regulating Snail	11
RNF8 induces autophagy and reduces inflammation by promoting AKT degradation via ubiquitination in ulcerative colitis mice	11
Structural and biochemical analyses of the nucleosome containing Komagataella pastoris histones	11
Dermatan sulphate promotes neuronal differentiation in mouse and human stem cells	11
RNA-recognition motifs and glycine and arginine-rich region cooperatively regulate the nucleolar localization of nucleolin	11
Toxicity and membrane perturbation properties of the ribotoxin-like protein Ageritin	10
Cellular senescence and its impact on the circadian clock	10
Current understandings of the relationship between extracellular vesicles and cilia	10
Lidocaine activates autophagy of astrocytes and ameliorates chronic constriction injury-induced neuropathic pain	10
Functional analyses of plasmodium ferredoxin Asp97Tyr mutant related to artemisinin resistance of human malaria parasites	10
ETV4 mediates the Wnt/β-catenin pathway through transcriptional activation of ANXA2 to promote hepatitis B virus-associated liver hepatocellular carcinoma progression	10
Post-translational modification enzymes as key regulators of ciliary protein trafficking	10
Quantitative nascent proteome profiling by dual-pulse labelling with O-propargyl-puromycin and stable isotope-labelled amino acids	10
Conditioned medium of the osteosarcoma cell line U2OS induces hBMSCs to exhibit characteristics of carcinoma-associated fibroblasts via activation of IL-6/STAT3 signalling	10
Abundant oleoyl-lysophosphatidylethanolamine in brain stimulates neurite outgrowth and protects against glutamate toxicity in cultured cortical neurons	10
Mangiferin alleviates endoplasmic reticulum stress in acute liver injury by regulating the miR-20a/miR-101a-Nrf2 axis	10
Pathogenic and protective roles of extracellular vesicles in neurodegenerative diseases	9
A cyclic lipopeptide surfactin is a species-selective Hsp90 inhibitor that suppresses cyanobacterial growth	9
The PKGIα/VASP pathway is involved in insulin- and high glucose-dependent regulation of albumin permeability in cultured rat podocytes	9
Double prenylation of SNARE protein Ykt6 is required for lysosomal hydrolase trafficking	9
The circadian clock and cancer: links between circadian disruption and disease Pathology	9
The coupling of translational control and stress responses	9
Patient-derived gene and protein expression signatures of NGLY1 deficiency	9
Characterization of recombinant murine GDE4 and GDE7, enzymes producing lysophosphatidic acid and/or cyclic phosphatidic acid	9
Cancer-associated mutations in SF3B1 disrupt the interaction between SF3B1 and DDX42	9
BaeR participates in cephalosporins susceptibility by regulating the expression level of outer membrane proteins in Escherichia coli	9
MicroRNA-548-3p overexpression inhibits proliferation, migration and invasion in osteoblast-like cells by targeting STAT1 and MAFB	8
Long non-coding RNA ZEB1-AS1 promotes proliferation and metastasis of hepatocellular carcinoma cells by targeting miR-299-3p/E2F1 axis	8
Polyamines produced by an extreme thermophile are essential for cell growth at high temperature	8
AMPK differentially alters sulphated glycosaminoglycans under normal and high glucose milieu in proximal tubular cells	8

Kinetic analysis of the inhibition mechanism of bovine mitochondrial F1-ATPase inhibitory protein using biochemical assay	8
The protein N-terminal acetyltransferase A complex contributes to yeast mitophagy via promoting expression and phosphorylation of Atg32	8
Inhibition of flippase-like activity by tubulin regulates phosphatidylserine exposure in erythrocytes from hypertensive and diabetic patients	8
The roles of nuclear myosin in the DNA damage response	8
Biotinylation-based proximity labelling proteomics: basics, applications and technical considerations	8
MiR-133a-3p inhibits the malignant progression of oesophageal cancer by targeting CDCA8	8
LncRNA HEIH promotes cell proliferation, migration and invasion by suppressing miR-214-3p in gastric carcinoma	8
PCYT2 synthesizes CDP-glycerol in mammals and reduced PCYT2 enhances the expression of functionally glycosylated α-dystroglycan	8
LncRNA PART1 promotes cell proliferation and inhibits apoptosis of oral squamous cell carcinoma by blocking EZH2 degradation	8
A light way for nuclear cell biologists	7
Functional characterization and tissue localization of the facilitative glucose transporter GLUT12	7
Studies on the gene regulation involved in the lytic–lysogenic switch in Staphylococcus aureus temperate bacteriophage Phi11	7
Identification and analysis of short open reading frames (sORFs) in the initially annotated noncoding RNA LINC00493 from human cells	7
MicroRNA-448 targets SATB1 to reverse the cisplatin resistance in lung cancer via mediating Wnt/β-catenin signalling pathway	7
Cell engineering for the production of hybrid-type N-glycans in HEK293 cells	7
Identification of PTPRσ-interacting proteins by proximity-labelling assay	7
Targeted protein degradation and drug discovery	7
Glycosylation decreases aggregation and immunogenicity of adalimumab Fab secreted fromPichia pastoris	7
CircRPPH1 promotes cell proliferation, migration and invasion of non-small cell lung cancer via the PI3K/AKT and JAK2/STAT3 signalling axes	7
The cap-specific m6A methyltransferase, PCIF1/CAPAM, is dynamically recruited to the gene promoter in a transcription-dependent manner	7
In vitroreconstitution of theEscherichia coli70S ribosome with a full set of recombinant ribosomal proteins	7
Circ_0000514 promotes breast cancer progression by regulating the miR-296-5p/CXCL10 axis	7
Liver microRNA-29b-3p positively correlates with relative enhancement values of magnetic resonance imaging and represses liver fibrosis	7
Tracing the NGLY1 footprints: insights from Drosophila	7
Effects of cryptochrome-modulating compounds on circadian behavioural rhythms in zebrafish	7
C-terminal aromatic residue of Plasmodium ferredoxin important for the interaction with ferredoxin: NADP(H) oxidoreductase: possible involvement for artemisinin resistance of human malaria parasites	6
LncRNA PCAT18/miR-301a/TP53INP1 axis is involved in gastric cancer cell viability, migration and invasion	6
MITOL regulates phosphatidic acid-binding activity of RMDN3/PTPIP51	6
The molecular mechanisms of mammalian sperm maturation regulated by NELL2-ROS1 lumicrine signaling	6
Differential use of p24 family members as cargo receptors for the transport of glycosylphosphatidylinositol-anchored proteins and Wnt1	6
Upregulated mGluR5 induces ER stress and DNA damage by regulating the NMDA receptor subunit NR2B	6
A novel site-specific chemical conjugation of IgG antibodies by affinity peptide for immunoassays	6
Dynamic localization of αB-crystallin at the microtubule cytoskeleton network in beating heart cells	6
MiR-142-5p promotes retinoblastoma cell proliferation, migration and invasion by targeting PTEN	6
Ever-expanding NGLY1 biology	6
Expression and affinity purification of recombinant mammalian mitochondrial ribosomal small subunit (MRPS) proteins and protein–protein interaction analysis indicate putative role in tumourigenic cell	6
Inner nuclear membrane proteins Lem2 and Bqt4 interact with different lipid synthesis enzymes in fission yeast	6
2,2,6,6-Tetramethylpiperidine-1-oxyl acts as a volatile inhibitor of ferroptosis and neurological injury	6
Characterization of the aberrant splicing of MAP3K7 induced by cancer-associated SF3B1 mutation	6
Escherichia coli amino acid auxotrophic expression host strains for investigating protein structure–function relationships	6
Human TRPV1 and TRPA1 are receptors for bacterial quorum sensing molecules	6
Structure of the Acinetobacter baumannii PmrA receiver domain and insights into clinical mutants affecting DNA binding and promoting colistin resistance	6
Genetic analysis of tellurate reduction reveals the selenate/tellurate reductase genes ynfEF and the transcriptional regulation of moeA by NsrR in Escherichia coli	6
A sweet protein monellin as a non-antibody scaffold for synthetic binding proteins	6
Novel photochromic inhibitor for mitotic kinesin Eg5 which forms multiple isomerization states	6
A slight bending of an α-helix in FliM creates a counterclockwise-locked structure of the flagellar motor in Vibrio	6
Structural analysis and reaction mechanism of malate dehydrogenase from Geobacillus stearothermophilus	6
Karyopherin-βs play a key role as a phase separation regulator	6
Capn4 aggravates angiotensin II-induced cardiac hypertrophy by activating the IGF-AKT signalling pathway	6
Direct and specific binding of cholesterol to the mitochondrial translocator protein (TSPO) using PhotoClick cholesterol analogue	6
DA-Raf and the MEK inhibitor trametinib reverse skeletal myocyte differentiation inhibition or muscle atrophy caused by myostatin and GDF11 through the non-Smad Ras–ERK pathway	6
Nascent chain-mediated translation regulation in bacteria: translation arrest and intrinsic ribosome destabilization	6
Structural insight and stability of TNFR-Fc fusion protein (Etanercept) produced by using transgenic silkworms	5
Adipose tissue thermogenesis by calcium futile cycling	5
Nucleoskeleton proteins for nuclear dynamics	5
Inhibitory effect of ascorbate on tryptophan 2,3-dioxygenase	5
Assay for the peptide:N-glycanase/NGLY1 and disease-specific biomarkers for diagnosing NGLY1 deficiency	5
High-level expression of human CH2 domain from the Fc region in Pichia pastoris and preparation of anti-CH2 antibodies	5
PPARα activation partially drives NAFLD development in liver-specific Hnf4a-null mice	5
Jaw1/LRMP is associated with the maintenance of Golgi ribbon structure	5
NGLY1: insights from Caenorhabditis elegans	5
Components from spider venom activate macrophages against glioblastoma cells: new potential adjuvants for anticancer immunotherapy	5
Comparison of ameliorative effects ofTaraxacum syriacumand N-acetylcysteine against acetaminophen-induced oxidative stress in rat liver and kidney	5
The N2N3 domains of ClfA, FnbpA and FnbpB in Staphylococcus aureus bind to human complement factor H, and their antibodies enhance the bactericidal capability of human blood	5
Nanog-mediated stem cell properties are critical for MBNL3-associated paclitaxel resistance of ovarian cancer	5
Circular RNA circNINL promotes breast cancer progression through activating β-catenin signaling via miR-921/ADAM9 axis	5
Crystal structure of adenylate kinase from an extremophilic archaeon Aeropyrum pernix with ATP and AMP	5
Physiological importance of NGLY1, as revealed by rodent model analyses	5
Structural insights into endothelin receptor signalling	5
The role of TREM2 N-glycans in trafficking to the cell surface and signal transduction of TREM2	5
Identification of novel heat shock-induced long non-coding RNA in human cells	5
Cloning and characterization of Thioredoxin 1 from the Cnidarian Hydra	5
Interaction between a fluoroquinolone derivative and RNAs with a single bulge	5
Autophagy-independent cytoprotection by optineurin from toxicity of aggregates formed by mutant huntingtin and mutant ataxin-3	5
Compounds in cigarette smoke induce EGR1 expression via the AHR, resulting in apoptosis and COPD	5
Molecular and functional characaterization of the novel odorant-binding protein geneAccOBP10fromApis cerana cerana	5
Efficient induction of proximity-dependent labelling by biotin feeding in BMAL1-BioID knock-in mice	5
A circular RNA derived from FAT atypical cadherin 3 promotes lung cancer progression via forming a regulatory loop with oncogenic ELAV like RNA binding protein 1	5