Journal of Experimental Botany

Papers
(The TQCC of Journal of Experimental Botany is 13. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-04-01 to 2025-04-01.)
ArticleCitations
Correction to: Auxin/cytokinin antagonism in shoot development: from moss to seed plants152
The selective estrogen receptor modulator clomiphene inhibits sterol biosynthesis in Arabidopsis thaliana127
The PEBP genes FLOWERING LOCUS T and TERMINAL FLOWER 1 modulate seed dormancy and size124
Unveiling the secrets of lotus seed longevity: insights into adaptive strategies for extended storage117
Date palm diverts organic solutes for root osmotic adjustment and protects leaves from oxidative damage in early drought acclimation100
Peroxisomal dependent signalling and dynamics modulate plant stress responses: reactive oxygen and nitrogen species as key molecules91
When rain collides with plants—patterns and forces of drop impact and how leaves respond to them87
The configuration of the vacuole is driven by clathrin-mediated trafficking in root cells of Arabidopsis thaliana85
Functional interactions among H2O2, NO, H2S, and melatonin in the physiology, metabolism, and quality of horticultural Solanaceae85
New crops on the block: effective strategies to broaden our food, fibre, and fuel repertoire in the face of increasingly volatile agricultural systems81
Molecular mechanisms affected by boron deficiency in root and shoot meristems of plants81
Local and systemic responses conferring acclimation of Brassica napus roots to low phosphorus conditions79
The transcriptional co-regulators NBCL1 and NBCL2 redundantly coordinate aerial organ development and root nodule identity in legumes76
Oil plant genomes: current state of the science73
Gene silencing in broomrapes and other parasitic plants of the Orobanchaceae family: mechanisms, considerations, and future directions69
Up-regulation of LsKN1 promotes cytokinin and suppresses gibberellin biosynthesis to generate wavy leaves in lettuce68
Advances in plant photobiology: let’s light it up once again67
A leaf-level spectral library to support high-throughput plant phenotyping: predictive accuracy and model transfer65
Transmembrane formins as active cargoes of membrane trafficking64
Jasmonate-deficient mutantlox3areveals crosstalk between jasmonate and ethylene in the differential regulation of male and female flower opening and early fruit development inCucurbita pepo<62
Alternative splicing in plants: current knowledge and future directions for assessing the biological relevance of splice variants62
Hormonal regulation of plant primary metabolism under drought61
A tell tail sign: a conserved C-terminal tail-anchor domain targets a subset of pathogen effectors to the plant endoplasmic reticulum61
Unraveling plant–microbe interactions: can integrated omics approaches offer concrete answers?57
Correction to: Ascorbate peroxidase in fruits and modulation of its activity by reactive species56
The transcription factor WRKY75 regulates the development of adventitious roots, lateral buds and callus by modulating hydrogen peroxide content in poplar56
AtHD2D, a plant-specific histone deacetylase involved in abscisic acid response and lateral root development56
Improving plant heat tolerance through modification of Rubisco activase in C3 plants to secure crop yield and food security in a future warming world54
JustRNA: a database of plant long noncoding RNA expression profiles and functional network52
Delayed senescence and crop performance under stress: always a functional couple?52
Correction52
Links between autophagy and lipid droplet dynamics51
Detection of the metabolic response to drought stress using hyperspectral reflectance51
Correction to: Challenges and advances towards the rational design of microalgal synthetic promoters in Chlamydomonas reinhardti49
Natural variation and CRISPR/Cas9 gene editing demonstrate the potential for a group VII ethylene response factor HvERF62 in regulating barley (Hordeum vulgare L.) waterlogging tolerance47
Kifunensine-sensitive ADP-ribosylation factor A1E G69R mutant reveals coordination of protein glycosylation and vesicle transport pathways47
Potential unrecognized redox-active atypical thioredoxins in eukaryote photosynthetic organisms47
No free entry: stomatal state as decision maker in defining stress response strategies47
On the origin of fatty acid biosynthesis in Archaeplastida47
Searching for nitroxyl modulators in Arabidopsis thaliana: a new paradigm of redox signaling in plants47
Metabolic and genetic analysis links TRITERPENE SYNTHASE 12 (VvTTPS12) to oleanolic acid biosynthesis in grape berry wax46
Growth conditions trigger genotype-specific metabolic responses that affect the nutritional quality of kale cultivars46
Unveiling shared genetic regulators of plant architectural and biomass yield traits in the Sorghum Association Panel46
Extended grain filling has potential to improve yield in grain sorghum46
Improving crop nutrient status: discovery, innovation, and translation45
Herbicide-resistant 4-hydroxyphenylpyruvate dioxygenase variants identified via directed evolution45
Enhancing photosynthetic phosphorus use efficiency through coordination of leaf phosphorus fractions, allocation, and anatomy during soybean domestication45
Correction to: Analysis of the PEBP gene family and identification of a novel FT orthologue in sugarcane44
Hydrogen peroxide signalling mediates fertilization and post-fertilization development in the red alga Bostrychia moritziana44
Overexpression mutants reveal a role for a chloroplast MPD protein in regulation of reactive oxygen species during chilling in Arabidopsis44
Core root-associated prokaryotic community and its relationship to host traits across wheat varieties44
Using targeted genome methylation for crop improvement43
ROS and RNS production, subcellular localization, and signaling triggered by immunogenic danger signals43
A dTALE approach demonstrates that induction of common bean OVATE Family Protein 7 promotes resistance to common bacterial blight42
Genome-wide-association study and transcriptome analysis reveal the genetic basis controlling the formation of leaf wax in Brassica napus42
Breeding effects on canopy light attenuation in maize: a retrospective and prospective analysis42
Extracellular RNA: mechanisms of secretion and potential functions41
The role of chloroplast SRP54 domains and its C-terminal tail region in post- and co-translational protein transport in vivo41
Tomato fruit quality traits and metabolite content are affected by reciprocal crosses and heterosis41
Leucine-rich repeat receptor kinase BM41 regulates cuticular wax deposition in sorghum41
Less water in agriculture? Potential and challenges in optimizing water use efficiency40
Guidelines for designing and interpreting drought experiments in controlled conditions40
In da club: the cytoplasmic kinase MAZZA joins CLAVATA signaling and dances with CLV1-like receptors40
Genomic and cell-specific regulation of benzylisoquinoline alkaloid biosynthesis in opium poppy39
An S-locus F-box protein as pollen S determinant targets non-self S-RNase underlying self-incompatibility in Citrus39
Unveiling the virulence mechanism of Leptosphaeria maculans in the Brassica napus interaction: the key role of sirodesmin PL in the induction of cell death39
A novel genome sequence ofJasminum sambachelps uncover the molecular mechanism underlying the accumulation of jasmonates39
Sink strength, nutrient allocation, cannabinoid yield, and associated transcript profiles vary in two drug-type Cannabis chemovars39
PagHAM4a–PagSCL21 and PagHAM4b–PagTCP20 modules positively regulate cambial activity and its differentiation into secondary xylem in poplar39
Rubisco and its regulation—major advances to improve carbon assimilation and productivity39
Model forms for triose phosphate utilization-limited photosynthetic rates: implications for estimation of photorespiratory carbon export and the contribution of mesophyll conductance to photosynthesis39
Temperature sum models in plant spring phenology studies: two commonly used methods have different fields of application38
Comparative phyloproteomics identifies conserved plasmodesmal proteins38
Altered expression of a raspberry homologue of VRN1 is associated with disruption of dormancy induction and misregulation of subsets of dormancy-associated genes38
Photoperiodic control of growth and reproduction in non-flowering plants38
Genome-wide association study of image-based trait reveals the genetic architecture of dark-induced leaf senescence in rice38
New insights into the regulation of plant metabolism by O-acetylserine: sulfate and beyond38
Massive effects on chromatin after ploidy rearrangement in doubled haploids38
A ribose world: current status and future challenges of plant RNA biology37
Phosphatidylinositol-phospholipase C3 negatively regulates the hypersensitive response via complex signaling with MAP kinase, phytohormones, and reactive oxygen species in Nicotiana benthamiana37
Conical petal epidermal cells, regulated by the MYB transcription factor MIXTA, have an ancient origin within the angiosperms37
Intrinsic cues guiding changes in division orientation in the Arabidopsis root meristem: a formative experience37
Mutation ofDEFECTIVE EMBRYO SAC1results in a low seed-setting rate in rice by regulating embryo sac development37
Acclimation strategies of the green alga Chlorella vulgaris to different light regimes revealed by physiological and comparative proteomic analyses37
Plasmodesmal endoplasmic reticulum proteins regulate intercellular trafficking of cucumber mosaic virus in Arabidopsis37
Natural variation of nutrient homeostasis among laboratory and field strains of Chlamydomonas reinhardtii36
Multi-omic profiles of Sorghum genotypes with contrasting heat tolerance connect pathways related to thermotolerance36
Rational domestication of a plant-based recombinant expression system expands its biosynthetic range35
A dual regulatory role for the arbuscular mycorrhizal master regulator RAM1 in tomato35
Lighting the path: how light signaling regulates stomatal movement and plant immunity34
Genetic mapping of sexually dimorphic volatile and non-volatile floral secondary chemistry of a dioecious willow34
GOLVEN peptides regulate lateral root spacing as part of a negative feedback loop on the establishment of auxin maxima34
Useful or merely convenient: can enzymatic antioxidant activity be used as a proxy for abiotic stress tolerance?34
Studying root–environment interactions in structured microdevices34
Tissues and mechanisms associated with Verticillium wilt resistance in tomato using bi-grafted near-isogenic lines33
Melatonin as a regulator of plant ionic homeostasis: implications for abiotic stress tolerance33
Plant protein–lipid interfaces studied by molecular dynamics simulations33
The dynamics of H2A.Z on SMALL AUXIN UP RNAs regulate abscisic acid–auxin signaling crosstalk in Arabidopsis33
Rapid on-site detection of crop RNA viruses using CRISPR/Cas13a33
Harnessing controlled-environment systems for enhanced production of medicinal plants32
Starch deficiency in tomato causes transcriptional reprogramming that modulates fruit development, metabolism, and stress responses32
Evolutionary origins, macroevolutionary dynamics, and climatic niche space of the succulent plant syndrome in the Caryophyllales32
ThePhytophthora capsiciRxLR effectorCRISIS2triggers cell death via suppressing plasma membrane H+-ATPase in the host plant32
From the lab to the field: CRISPR/Cas addressing challenges in agriculture32
Rice circadian clock regulator Nhd1 controls the expression of the sucrose transporter geneOsSUT1and impacts carbon–nitrogen balance32
Complementary water and nutrient utilization of perianth structural units help maintain long floral lifespan inDendrobium32
Cytokinin modulates the metabolic network of sulfur and glutathione32
Society for Experimental Biology Centenary (1923–2023)32
Non-Rabl chromosome organization in endoreduplicated nuclei of barley embryo and endosperm tissues32
Corrigendum to: Diverse plant viruses: a toolbox for dissection of cellular pathways31
Protein phosphatase StTOPP6 negatively regulates potato bacterial wilt resistance by modulating MAPK signaling31
Global survey of alternative splicing and gene modules associated with fertility regulation in a thermosensitive genic male sterile wheat31
Laminarin-triggered defence responses are geographically dependent in natural populations of Solanum chilense31
A new spider mite elicitor triggers plant defence and promotes resistance to herbivores31
Light and temperature signals are integrated through a phytochrome B-dependent gene regulatory network in rice31
Hormonal control of the molecular networks guiding vascular tissue development in the primary root meristem of Arabidopsis30
A poplar option: the ‘within-individual approach’ for elucidating xylem structure–function relationships30
NAC61 regulates late- and post-ripening osmotic, oxidative, and biotic stress responses in grapevine30
Rho of Plants patterning: linking mathematical models and molecular diversity30
Ammonium nutrition interacts with iron homeostasis in Brachypodium distachyon30
Xylem embolism and bubble formation during freezing suggest complex dynamics of pressure in Betula pendula stems30
Heat shock factor HSFA2 fine-tunes resetting of thermomemory via plastidic metalloprotease FtsH630
Recent progress in understanding the cellular and genetic basis of plant responses to low oxygen holds promise for developing flood-resilient crops30
Lateral roots but not root hairs contribute to high uptake of manganese and cadmium in rice30
Ammonium transporters cooperatively regulate rice crown root formation responding to ammonium nitrogen30
Unraveling the role of epigenetic regulation in asymmetric cell division during plant development30
Corrigendum to: Siliplant1 protein precipitates silica in sorghum silica cells30
Impacts of phosphatidylglycerol on plastid gene expression and light induction of nuclear photosynthetic genes29
Functional characterization of calmodulin-like proteins, CML13 and CML14, as novel light chains of Arabidopsis class VIII myosins29
The protein phosphatase 2A catalytic subunit StPP2Ac2b is involved in the control of potato tuber sprouting and source–sink balance in tubers and sprouts29
Cytosolic fumarase acts as a metabolic fail-safe for both high and low temperature acclimation ofArabidopsis thaliana29
A novel chicory fructanase can degrade common microbial fructan product profiles and displays positive cooperativity29
Waking up Sleeping Beauty: DNA damage activates dormant stem cell division by enhancing brassinosteroid signaling28
StHAB1, a negative regulatory factor in abscisic acid signaling, plays crucial roles in potato drought tolerance and shoot branching28
Polycomb proteins control floral determinacy by H3K27me3-mediated repression of pluripotency genes in Arabidopsis thaliana28
Developing a platform for production of the oxylipin KODA in plants28
Spatial regulation of immunity: unmasking the secrets of abaxial immunity to powdery mildew28
Starch synthase II plays a crucial role in starch biosynthesis and the formation of multienzyme complexes in cassava storage roots28
The genetic basis of plants’ battle against witchweeds: linking immune responses to distinct resistance mechanisms28
Impairment in a member of AP2/ERF and F-box family protein enhances complete panicle exsertion in rice28
Golgi anti-apoptotic proteins redundantly counteract cell death by inhibiting production of reactive oxygen species under endoplasmic reticulum stress28
Stress response membrane protein OsSMP2 negatively regulates rice tolerance to drought28
Expression of flavodiiron protein rescues defects in electron transport around PSI resulting from overproduction of Rubisco activase in rice27
Are cyclic plant and animal behaviours driven by gravimetric mechanical forces?27
The circadian clock and thermal regulation in plants: novel insights into the role of positive circadian clock regulators in temperature responses27
Overexpression of SHORT-ROOT2 transcription factor enhances the outgrowth of mature axillary buds in poplar trees27
The transcription factor SlWRKY37 positively regulates jasmonic acid- and dark-induced leaf senescence in tomato27
Root topological order drives variation of fine root vessel traits and hydraulic strategies in tropical trees27
R-loops: emerging key regulators in plants27
Plant environmental sensing relies on specialized plastids27
Endocytic recycling in plants: pathways and regulation27
Optimizing nutrient transporters to enhance disease resistance in rice27
Macromolecular tool box to elucidate CLAVATA3/EMBRYO SURROUNDING REGION-RELATED–RLK binding, signaling, and downstream effects26
The symbiosome—a transient organelle in evolution26
Priming of Arabidopsis resistance to herbivory by insect egg deposition depends on the plant’s developmental stage26
Importance of phenotypic plasticity in crop resilience26
Breaking boundaries: a novel role for CUC genes in sex determination in cucurbits26
A key mutation in magnesium chelatase I subunit leads to a chlorophyll-deficient mutant of tea (Camellia sinensis)26
Arabidopsis transcription factor TCP13 promotes shade avoidance syndrome-like responses by directly targeting a subset of shade-responsive gene promoters26
Dissection of theIDApromoter identifies WRKY transcription factors as abscission regulators in Arabidopsis26
IRONMAN peptide interacts with OsHRZ1 and OsHRZ2 to maintain Fe homeostasis in rice26
The transcription factors DcHB30 and DcWRKY75 antagonistically regulate ethylene-induced petal senescence in carnation (Dianthus caryophyllus)26
CmFSI8/CmOFP13 encoding an OVATE family protein controls fruit shape in melon26
Pseudomonas syringaeaddresses distinct environmental challenges during plant infection through the coordinated deployment of polysaccharides26
The vesicular trafficking system component MIN7 is required for minimizing Fusarium graminearum infection26
Nodulating another way: what can we learn from lateral root base nodulation in legumes?25
Auxin analog-induced Ca2+ signaling is independent of inhibition of endosomal aggregation in Arabidopsis roots25
How to use CRISPR/Cas9 in plants: from target site selection to DNA repair25
Scaling of leaf area with biomass in trees reconsidered: constant metabolically active sapwood volume per unit leaf area with height growth25
ABSCISIC ACID INSENSITIVE 3 promotes auxin signalling by regulating SHY2 expression to control primary root growth in response to dehydration stress25
Application of deep learning for the analysis of stomata: a review of current methods and future directions25
RHO OF PLANTS signalling and the activating ROP GUANINE NUCLEOTIDE EXCHANGE FACTORS: specificity in cellular signal transduction in plants25
LEAfing through literature: late embryogenesis abundant proteins coming of age—achievements and perspectives25
Unraveling host–microbe interactions and ecosystem functions in moss–bacteria symbioses25
Custom methods to identify conserved genetic modules applied to novel transcriptomic data from Amborella trichopoda25
Major niche transitions in Pooideae correlate with variation in photoperiodic flowering and evolution of CCT domain genes25
Mechanism of oxalate decarboxylase Oxd_S12 from Bacillus velezensis BvZ45-1 in defence against cotton verticillium wilt25
Four-dimensional quantitative analysis of cell plate development in Arabidopsis using lattice light sheet microscopy identifies robust transition points between growth phases25
Exploring natural genetic variation in photosynthesis-related traits of barley in the field25
Convergent loss of anthocyanin pigments is controlled by the same MYB gene in cereals25
Similar chilling response of dormant buds in potato tuber and woody perennials25
CRISPR/Cas9-mediated multiplex gene editing of gamma and omega gliadins: paving the way for gliadin-free wheat25
Anatomical limitations in adventitious root formation revealed by magnetic resonance imaging, infrared spectroscopy, and histology of rose genotypes with contrasting rooting phenotypes25
Reciprocal regulation of cellulose and lignin biosynthesis by the transcription factor OsTCP1925
Plant age-dependent dynamics of annatto pigment (bixin) biosynthesis in Bixa orellana25
Molecular and genetic regulation of petal number variation25
As right as rain: deciphering drought-related metabolic flexibility in the C4–CAMPortulaca25
Correction to: A gain-of-function mutation in BnaIAA13 disrupts vascular tissue and lateral root development in Brassica napus25
Prohibitin 3 gives birth to a new lateral root primordium25
Redox regulation of meristem quiescence: outside/in25
Ecological biomechanics of marine macrophytes24
A glucose–target of rapamycin signaling axis integrates environmental history of heat stress through maintenance of transcription-associated epigenetic memory in Arabidopsis24
Photosynthetic decline in aging perennial grass is not fully explained by leaf nitrogen24
Same, yet different: towards understanding nutrient use in hemp- and drug-type Cannabis24
The benefits of permutation-based genome-wide association studies24
Rhythmic lipid and gene expression responses to chilling in panicoid grasses24
A genomic journey across the past, present, and future of South American maize24
High-resolution methylome analysis uncovers stress-responsive genomic hotspots and drought-sensitive transposable element superfamilies in the clonal Lombardy poplar24
Interaction of PASTICCINO2 with Golgi anti-apoptotic proteins confers resistance to endoplasmic reticulum stress and is dependent on very-long-chain fatty acids24
Facilitating transcriptional transitions: an overview of chromatin bivalency in plants24
RAM1 orchestrates arbuscular mycorrhizal symbiosis in non-legumes23
The tonoplast-localized transporter OsNRAMP2 is involved in iron homeostasis and affects seed germination in rice23
Machine learning-enabled computer vision for plant phenotyping: a primer on AI/ML and a case study on stomatal patterning23
Heterosis goes underground23
Cotton phloem loads from the apoplast using a single member of its nine-member sucrose transporter gene family23
The GpIA7 effector from the potato cyst nematode Globodera pallida targets potato EBP1 and interferes with the plant cell cycle23
Auxin/cytokinin antagonism in shoot development: from moss to seed plants23
The response of mesophyll conductance to ozone-induced oxidative stress is genotype-dependent in poplar23
To bind or not to bind: how AUXIN RESPONSE FACTORs select their target genes23
Antagonism between SUMO1/2 and SUMO3 regulates SUMO conjugate levels and fine-tunes immunity23
Dynamics and thermal sensitivity of rRNA maturation paths in plants23
Roles of acyl-CoA-binding proteins in plant reproduction23
Adjusting plant nutrient acquisition to fluctuating availability: transcriptional co-regulation of the nitrate and phosphate deprivation responses in roots23
Physiological and molecular insights into alternate bearing in mango using next-generation sequencing approaches23
Apocarotenoid signals in plant development and beyond23
The sucrose signalling route controls Flavescence dorée phytoplasma load in grapevine leaves23
The protein modifier SUMO is critical for integrity of the Arabidopsis shoot apex at warm ambient temperatures23
Sucrose phosphate synthase 8 is required for the remobilization of carbon reserves in rice stems during grain filling23
Machine learning for image-based multi-omics analysis of leaf veins23
The cysteine-rich receptor-like kinase CRK10 targeted by Coniella diplodiella effector CdE1 contributes to white rot resistance in grapevine22
Induced mutations in SlE8 and SlACO1 control tomato fruit maturation and shelf-life22
Plant epigenomics for extenuation of abiotic stresses: challenges and future perspectives22
Analysis of the PEBP gene family and identification of a novelFLOWERING LOCUS Torthologue in sugarcane22
Autophagy in sexual plant reproduction: new insights22
Using breeding and quantitative genetics to understand the C4 pathway22
Suppression of NLR-mediated plant immune detection by bacterial pathogens22
Detailed characterization of the UMAMIT proteins provides insight into their evolution, amino acid transport properties, and role in the plant22
Bridging pathways: SBP15 regulates GOBLET in modulating tomato axillary bud outgrowth22
Transcriptome-wide association study coupled with eQTL analysis reveals the genetic connection between gene expression and flowering time in Arabidopsis22
Xylem biomechanics, water storage, and density within roots and shoots of an angiosperm tree species22
Elevated CO2 concentration increases maize growth under water deficit or soil salinity but with a higher risk of hydraulic failure22
Targeted metabolite profiling as a top-down approach to uncover interspecies diversity and identify key conserved operational features in the Calvin–Benson cycle22
Oligogalactolipid production during cold challenge is conserved in early diverging lineages22
A tomato receptor-like cytoplasmic kinase, SlZRK1, acts as a negative regulator in wound-induced jasmonic acid accumulation and insect resistance22
Stomatal improvement for crop stress resistance22
Research on photosynthetic oscillations supports the classical concept of cyclic electron transport producing ATP22
Chloroplast thiol redox dynamics through the lens of genetically encoded biosensors21
A novel natural variation in the promoter of GmCHX1 regulates conditional gene expression to improve salt tolerance in soybean21
Carnivorous plant evolution: is a killer defense always the best option?21
Integration of nitrate and abscisic acid signaling in plants21
Drought survival in conifer species is related to the time required to cross the stomatal safety margin21
An essential role for mannan degradation in both cell growth and secondary cell wall formation21
Confirmation of GmPPR576 as a fertility restorer gene of cytoplasmic male sterility in soybean21
Protein–protein interactions in fatty acid elongase complexes are important for very-long-chain fatty acid synthesis21
Actin isovariant ACT7 controls root meristem development in Arabidopsis through modulating auxin and ethylene responses21
Altered collective mitochondrial dynamics in the Arabidopsismsh1mutant compromising organelle DNA maintenance21
Introduction of a terminal electron sink in chloroplasts decreases leaf cell expansion associated with higher proteasome activity and lower endoreduplication21
Identification of short protein-destabilizing sequences in Arabidopsis cyclin-dependent kinase inhibitors, ICKs21
A genome-wide survey of DNA methylation reveals hyper-methylation regulates after-ripening and dormancy of recalcitrant Panax notoginseng seeds21
Regulation of primary seed dormancy by MAJOR LATEX PROTEIN-LIKE PROTEIN329 in Arabidopsis is dependent on DNA-BINDING ONE ZINC FINGER621
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