Journal of Medical Microbiology

Article	Citations
Emerging tick-borne pathogens of public health importance: a mini-review	160
Zinc sulfate in combination with a zinc ionophore may improve outcomes in hospitalized COVID-19 patients	111
Streptomyces from traditional medicine: sources of new innovations in antibiotic discovery	96
Epidemiological and clinical characteristics of coronavirus disease (COVID-19) cases at a screening clinic during the early outbreak period: a single-centre study	85
Co-infection in critically ill patients with COVID-19: an observational cohort study from England	74
Evaluation of metal-based antimicrobial compounds for the treatment of bacterial pathogens	65
The role of Akkermansia muciniphila in obesity, diabetes and atherosclerosis	59
Validation of a single-step, single-tube reverse transcription loop-mediated isothermal amplification assay for rapid detection of SARS-CoV-2 RNA	58
On the emergence, spread and resistance of Candida auris: host, pathogen and environmental tipping points	51
Potential RNA-dependent RNA polymerase inhibitors as prospective therapeutics against SARS-CoV-2	49
The clinical significance of simultaneous detection of pathogens from bronchoalveolar lavage fluid and blood samples by metagenomic next-generation sequencing in patients with severe pneumonia	37
JMM Profile: Carbapenems: a broad-spectrum antibiotic	32
Understanding the microbial components of periodontal diseases and periodontal treatment-induced microbiological shifts	26
Ability of quantitative PCR to discriminate Pneumocystis jirovecii pneumonia from colonization	25
Archived dengue serum samples produced false-positive results in SARS-CoV-2 lateral flow-based rapid antibody tests	25
Molecular identification of pathogenic fungi in formalin-fixed and paraffin-embedded tissues	23
Pseudomonas aeruginosa biofilm formation on endotracheal tubes requires multiple two-component systems	23
Cronobacter sakazakii induces necrotizing enterocolitis by regulating NLRP3 inflammasome expression via TLR4	22
Clinical evaluation of a fully automated, laboratory-developed multiplex RT-PCR assay integrating dual-target SARS-CoV-2 and influenza A/B detection on a high-throughput platform	22
The emerging importance of Shiga toxin-producing Escherichia coli other than serogroup O157 in England	21
Same-day antimicrobial susceptibility test using acoustic-enhanced flow cytometry visualized with supervised machine learning	21
Comparing DADA2 and OTU clustering approaches in studying the bacterial communities of atopic dermatitis	20
Prospective multi-center evaluation on risk factors, clinical characteristics and outcomes due to carbapenem resistance in Acinetobacter baumannii complex bacteraemia: experience from the Chinese Anti	20
Detection of SARS-CoV-2 in saliva: implications for specimen transport and storage	20
CPC-containing oral rinses inactivate SARS-CoV-2 variants and are active in the presence of human saliva	19

Acceptable performance of the Abbott ID NOW among symptomatic individuals with confirmed COVID-19	18
Evaluating the use of a 22-pathogen TaqMan array card for rapid diagnosis of respiratory pathogens in intensive care	17
Metagenome-wide association study of the alterations in the intestinal microbiome composition of ankylosing spondylitis patients and the effect of traditional and herbal treatment	17
Epidemiology of yeast species causing bloodstream infection in Tehran, Iran (2015–2017); superiority of 21-plex PCR over the Vitek 2 system for yeast identification	17
Emergence of a plasmid-borne tigecycline resistance in Klebsiella pneumoniae in Vietnam	16
In vitro synergistic activity of the sulbactam/avibactam combination against extensively drug-resistant Acinetobacter baumannii	16
A 25-year retrospective study of Chlamydia psittaci in association with equine reproductive loss in Australia	16
Prebiotics and probiotics for autism spectrum disorder: a systematic review and meta-analysis of controlled clinical trials	16
Shiga toxin-producing Escherichia coli haemolytic uraemic syndrome (STEC-HUS): diagnosis, surveillance and public-health management in England	15
Molecular characterization of carbapenem-resistant Enterobacteriaceae and emergence of tigecycline non-susceptible strains in the Henan province in China: a multicentrer study	15
Human bocavirus (HBoV) in Kuwait: molecular epidemiology and clinical outcome of the virus among patients with respiratory diseases	15
The microbiome of the nasopharynx	15
Point of care testing of Influenza A/B and RSV in an adult respiratory assessment unit is associated with improvement in isolation practices and reduction in hospital length of stay	15
Co-infections of two carbapenemase-producing Enterobacter hormaechei clinical strains isolated from the same diabetes individual in China	15
Impact of pH on growth of Staphylococcus epidermidis and Staphylococcus aureus in vitro	15
Effect of COVID-19 on vaccination coverage in Brazil	14
Komodo-dragon cathelicidin-inspired peptides are antibacterial against carbapenem-resistant Klebsiella pneumoniae	14
Cholera dynamics: lessons from an epidemic	14
The effect of probiotic supplementation on the gut microbiota of preterm infants	14
Novel multiplex PCRs for detection of the most prevalent carbapenemase genes in Gram-negative bacteria within Germany	14
Network pharmacology and molecular docking analysis on mechanisms of Tibetan Hongjingtian (Rhodiola crenulata) in the treatment of COVID-19	14
Antimicrobial resistance profiles of diarrhoeagenic Escherichia coli isolated from travellers returning to the UK, 2015–2017	13
Clonal spread of ArmA- and OXA-23-coproducing Acinetobacter baumannii International Clone 2 in Brazil during the first wave of the COVID-19 pandemic	13
Emergence of carbapenem-resistant Klebsiella pneumoniae harbouring bla OXA-48-like genes in China	13
Repurposing bioactive compounds for treating multidrug-resistant pathogens	13
Rhein inhibits the growth of Propionibacterium acnes by blocking NADH dehydrogenase-2 activity	12
Sixteen cases of severe pneumonia caused by Chlamydia psittaci in South China investigated via metagenomic next-generation sequencing	12
Encapsulated cyclosporine does not change the composition of the human microbiota when assessed ex vivo and in vivo	12
Contribution of the efflux pump AcrAB-TolC to the tolerance of chlorhexidine and other biocides in Klebsiella spp.	12
Emergence of novel strains of Shigella flexneri associated with sexual transmission in adult men in England, 2019–2020	12
Evaluation of GENECUBE Mycoplasma for the detection of macrolide-resistant Mycoplasma pneumoniae	12
Host factors abolish the need for polysaccharides and extracellular matrix-binding protein in Staphylococcus epidermidis biofilm formation	12
Development, deployment and in-field demonstration of mobile coronavirus SARS-CoV-2 Nucleic acid amplification test	12
Eucalyptol inhibits biofilm formation of Streptococcus pyogenes and its mediated virulence factors	12
Relatedness of type IV pilin PilA amongst geographically diverse Moraxella bovoculi isolated from cattle with infectious bovine keratoconjunctivitis	11
Dental biofilm and its ecological interrelationships in ovine periodontitis	11
Increasingly limited options for the treatment of enteric fever in travellers returning to England, 2014–2019: a cross-sectional analytical study	11
The One Health European Joint Programme (OHEJP), 2018–2022: an exemplary One Health initiative	11
Molecular docking, dynamics and free energy analyses of Acinetobacter baumannii OXA class enzymes with carbapenems investigating their hydrolytic mechanisms	11
Microbiological pattern of prosthetic hip and knee infections: a high-volume, single-centre experience in China	11
Prevalence of Mycoplasma genitalium fluoroquinolone-resistance markers, and dual-class-resistance markers, in asymptomatic men who have sex with men	11
Reversal of heavy metal-induced antibiotic resistance by dandelion root extracts and taraxasterol	10
Molecular evaluation of quorum quenching potential of vanillic acid against Yersinia enterocolitica through transcriptomic and in silico analysis	10
Molecular identification of Nocardia species causing endophthalmitis using multilocus sequence analysis (MLSA): a 10-year perspective	10
Sodium salicylate interferes with quorum-sensing-regulated virulence in chronic wound isolates of Pseudomonas aeruginosa in simulated wound fluid	10
Adaptations of carbapenem resistant Acinetobacter baumannii (CRAB) in the hospital environment causing sustained outbreak	10
The role of lipid droplets in microbial pathogenesis	10
Diversity of carbapenemase-producing Enterobacterales in England as revealed by whole-genome sequencing of isolates referred to a national reference laboratory over a 30-month period	10
Lipopolysaccharide from biofilm-forming Pseudomonas aeruginosa PAO1 induces macrophage hyperinflammatory responses	10
Feasibility analysis and mechanism exploration of Rhei Radix et Rhizome−Schisandrae Sphenantherae Fructus (RS) against COVID-19	10

Extracellular DNA controls expression of Pseudomonas aeruginosa genes involved in nutrient utilization, metal homeostasis, acid pH tolerance and virulence	10
In vitro synergy of 5-nitrofurans, vancomycin and sodium deoxycholate against Gram-negative pathogens	10
Serum biomarkers to differentiate Gram-negative, Gram-positive and fungal infection in febrile patients	10
Whole-genome sequencing to investigate two concurrent outbreaks of Salmonella Enteritidis in South Africa, 2018	9
Epidemiology and genomic analysis of Shiga toxin-producing Escherichia coli clonal complex 165 in the UK	9
Detection of parC gene mutations associated with quinolone resistance in Mycoplasma genitalium: evaluation of a multiplex real-time PCR assay	9
Emerging strategies for environmental decontamination of the nosocomial fungal pathogen Candida auris	9
Porphyromonas pasteri and Prevotella nanceiensis in the sputum microbiota are associated with increased decline in lung function in individuals with cystic fibrosis	9
Aminoglycoside resistance in Pseudomonas aeruginosa: the contribution of the MexXY-OprM efflux pump varies between isolates	9
Immunogenicity after the first dose of the BNT162b2 mRNA Covid-19 vaccine: real-world evidence from Greek healthcare workers	9
Variations in oral microbiome and its predictive functions between tumorous and healthy individuals	9
First description of IncX3 NDM-5-producing plasmid within Escherichia coli ST448 in Mali	9
Sampling challenges in diagnosis of chronic bacterial infections	9
Clinical utility of 16S rRNA PCR in pleural infection	9
Pan-drug resistant Providencia rettgeri contributing to a fatal case of COVID-19	9
JMM Profile: Actinobacillus pleuropneumoniae: a major cause of lung disease in pigs but difficult to control and eradicate	9
Disinfection to control African swine fever virus: a UK perspective	8
Detection and characterization of hybrid uropathogenic Escherichia coli strains among E. coli isolates causing community-acquired urinary tract infection	8
Whole genome sequencing of a clinical drug resistant Candida albicans isolate reveals known and novel mutations in genes involved in resistance acquisition mechanisms	8
The rough colony morphotype of Mycobacterium avium exhibits high virulence in human macrophages and mice	8
Identification & correlation of bacterial diversity in oral cancer and long-term tobacco chewers- A case-control pilot study	8
Validation of saliva sampling as an alternative to oro-nasopharyngeal swab for detection of SARS-CoV-2 using unextracted rRT-PCR with the Allplex 2019-nCoV assay	8
Whole-genome sequencing analysis of multidrug-resistant Mycobacterium tuberculosis from Java, Indonesia	8
Characterization of φEf-vB1 prophage infecting oral Enterococcus faecalis and enhancing bacterial biofilm formation	8
Optimizing a real-time PCR assay for rapid detection of Candida auris in nasal and axillary/groin samples	8
Rapid Sepsityper in clinical routine: 2 years’ successful experience	8
Matrix-assisted laser desorption/ionization time-of-flight MS for the accurate identification of Burkholderia cepacia complex and Burkholderia gladioli in the clinical microbiology laboratory	8
The prevalence of dermatophytoses in Brazil: a systematic review	8
Antifungal activity of etomidate against growing biofilms of fluconazole-resistant Candida spp. strains, binding to mannoproteins and molecular docking with the ALS3 protein	8
Emergence of mgrB locus deletion mediating polymyxin resistance in pandemic KPC-producing Klebsiella pneumoniae ST15 lineage	8
IncN3 and IncHI2 plasmids with an In1763 integron carrying bla IMP-1 in carbapenem-resistant Enterobacterales clinical isolates from the UK	8
Impact of different SARS-CoV-2 assays on laboratory turnaround time	8
Modelling persistent Mycoplasma pneumoniae biofilm infections in a submerged BEAS-2B bronchial epithelial tissue culture model	8
Disinfection methods of dental unit waterlines contamination: a systematic review	8
Invasion and diversity in Pseudomonas aeruginosa urinary tract infections	8
Immunomodulatory streptococci that inhibit CXCL8 secretion and NFκB activation are common members of the oral microbiota	8
The epidemiology and molecular characteristics of linezolid-resistant Staphylococcus capitis in Huashan Hospital, Shanghai	8
LPS stimulation during HCV infection induces MMP/TIMP1 imbalance in macrophages	8
Identification and antimicrobial susceptibility of referred Nocardia isolates in Victoria, Australia 2009–2019	7
SARS-CoV-2 and Prevotella spp.: friend or foe? A systematic literature review	7
Emergence of clinical isolates of Pseudomonas asiatica and Pseudomonas monteilii from Japan harbouring an acquired gene encoding a carbapenemase VIM-2	7
Detection and phylogenetic analysis of Human bocavirus in children diagnosed with acute respiratory tract infection	7
Complete genome sequence and probiotic properties of Lactococcus petauri LZys1 isolated from healthy human gut	7
JMM Profile: Streptococcus pneumoniae: sugar-coated captain of the men of death	7
Resistance to nitrofurantoin is an indicator of extensive drug-resistant (XDR) Enterobacteriaceae	7
Longitudinal analysis of the impact of oral contraceptive use on the gut microbiome	7
Logic in the time of coronavirus	7
Hospital sink traps as a potential source of the emerging multidrug-resistant pathogen Cupriavidus pauculus: characterization and draft genome sequence of strain MF1	7
A large food-borne outbreak of campylobacteriosis in kindergartens and primary schools in Pescara, Italy, May–June 2018	7
Plant-associated Pseudomonas aeruginosa strains harbour multiple virulence traits critical for human infection	7
Prototheca bovis, a unicellular achlorophyllous trebouxiophyte green alga in the healthy human intestine	7
Uropathogenic Escherichia coli can cause cystitis at extremely low inocula in a pig model	7
JMM profile: Loop-mediated isothermal amplification (LAMP): for the rapid detection of nucleic acid targets in resource-limited settings	7
Thymidine utilisation pathway is a novel phenotypic switch of Mycoplasma hominis	7
Comparative analyses of clinical features reveal the severity of human adenovirus type 55 and type 7 in acute respiratory tract infections	7
JMM Profile: Tick-borne encephalitis virus	7
Outbreak of KPC-producing Klebsiella pneumoniae ST15 strains in a Chinese tertiary hospital: resistance and virulence analyses	6
Reporting of RT-PCR cycle threshold (Ct) values during the first wave of COVID-19 in Qatar improved result interpretation in clinical and public health settings	6
Comparative effects of viral-transport-medium heat inactivation upon downstream SARS-CoV-2 detection in patient samples	6
High mortality by nosocomial infections caused by carbapenem-resistant P. aeruginosa in a referral hospital in Brazil: facing the perfect storm	6
An update on ampicillin resistance and β-lactamase genes of Bacteroides spp.	6
Molecular identification and antifungal susceptibility of clinically relevant and cryptic species of Aspergillus sections Flavi and Nigri	6
JMM Profile: Vibrio cholerae: an opportunist of human crises	6
First identification of bla NDM-5 producing Escherichia coli from neonates and a HIV infected adult in Tanzania	6
Clinical efficacy and safety of antifungal drugs for the treatment of Candida parapsilosis infections: a systematic review and network meta-analysis	6
Wide distribution of Escherichia coli carrying IncF plasmids containing bla NDM-5 and rmtB resistance genes from hospitalized patients in England	6
Quality indicators for blood culture: 1 year of monitoring with BacT/Alert Virtuo at a French hospital	6
JMM Profile: Achromobacter xylosoxidans: the cloak-and-dagger opportunist	6
JMM Profile: Bordetella pertussis and whooping cough (pertussis): still a significant cause of infant morbidity and mortality, but vaccine-preventable	6
Seroprevalence of parechovirus A1, A3 and A4 antibodies in Yamagata, Japan, between 1976 and 2017	6
Genomic epidemiology of the opportunistic pathogen Staphylococcus coagulans from companion dogs	5
Darunavir inhibits Cryptococcus neoformans/Cryptococcus gattii species complex growth and increases the susceptibility of biofilms to antifungal drugs	5
An isothermal amplification-coupled dipstick for the rapid detection of COVID-19	5
Is there an optimal method to detach Candida albicans biofilm from dental materials?	5
Use of Sysmex UF-5000 flow cytometry in rapid diagnosis of urinary tract infection and the importance of validating carryover rates against bacterial count cut-off	5
The immunomodulatory activity of secnidazole–nitazoxanide in a murine cryptosporidiosis model	5
Paediatric bacterial meningitis in the USA: outcomes and healthcare resource utilization of nosocomial versus community-acquired infection	5
Hydroxyethoxy phenyl butanone, a new cosmetic preservative, does not cause bacterial cross-resistance to antimicrobials	5
Difference in drug susceptibility distribution and clinical characteristics between Mycobacterium avium and Mycobacterium intracellulare lung diseases in Shanghai, China	5
Massive sequencing of the V3–V4 hypervariable region of bronchoalveolar lavage from patients with COVID-19 and VAP reveals the collapse of the pulmonary microbiota	5

Treating autism spectrum disorder by intervening with gut microbiota	5
Clinical characteristics and antibody response to SARS-CoV-2 spike 1 protein using VITROS Anti-SARS-CoV-2 antibody tests in COVID-19 patients in Japan	5
Evaluation of the antifungal effect of chlorogenic acid against strains of Candida spp. resistant to fluconazole: apoptosis induction and in silico analysis of the possible mechanisms of action	5
Early life bacterial airway colonization, local immune mediator response and risk of otitis media	5
Emergence of azole resistant-Aspergillus fumigatus infections during STAT3-deficiency	5
The epidemiology of AmpC-producing Escherichia coli isolated from dairy cattle faeces on pasture-fed farms	5
Shiga toxin-producing Escherichia coli clonal complex 32, including serotype O145:H28, in the UK and Ireland	5
Effect of adding probiotics to an antibiotic intervention on the human gut microbial diversity and composition: a systematic review	5
Effects of calcineurin inhibitors, cyclosporine A and tacrolimus (FK506), on the activity of antifungal drugs against Candida spp.	5
Normal breathing releases SARS-CoV-2 into the air	5
In vitro activity of bedaquiline against Mycobacterium avium complex	5
JMM Profile: Staphylococcus epidermidis	5
Improved diagnosis of gastrointestinal infections using a semi-automated multiplex real-time PCR for detection of enteropathogens	5
2-Alkyl-4-quinolone quorum sensing molecules are biomarkers for culture-independent Pseudomonas aeruginosa burden in adults with cystic fibrosis	5
Comparative genomics and pangenomics of vancomycin-resistant and susceptible Enterococcus faecium from Irish hospitals	5
Chitosan propolis nanocomposite alone or in combination with apramycin: an alternative therapy for multidrug-resistant Salmonella Typhimurium in rabbits: in vitro and in vivo study	5
Novel 16S rRNA methyltransferase RmtE3 in Acinetobacter baumannii ST79	5
Study of the impact of cultivation conditions and peg surface modification on the in vitro biofilm formation of Staphylococcus aureus and Staphylococcus epidermidis in a system analogous to the Calgar	5
Stenotrophomonas maltophilia phenotypic and genotypic features through 4-year cystic fibrosis lung colonization	5
Shigella escapes lysosomal degradation through inactivation of Rab31 by IpaH4.5	5
Adaptation of gltA and ssrA assays for diversity profiling by Illumina sequencing to identify Bartonella henselae, B. clarridgeiae and B. koehlerae	5
Hospital transmission of borderline oxacillin-resistant Staphylococcus aureus evaluated by whole-genome sequencing	5