Journal of Medical Microbiology

Article	Citations
An end-point multiplex RT-PCR for SARS-CoV-2, Influenza A and B detection, including simultaneous RNAse P amplification: a timely tool for more accessible differential diagnosis	44
Corrigendum: Fosfomycin resistance in extended-spectrum beta-lactamase producing Escherichia coli isolated from urinary tract-infected patients in a tertiary care hospital	37
Changes in the expression of miR-103a and miR-21: a functional diagnosis of toxocariasis in rats	36
Matrix-assisted laser desorption/ionization-time of flight MS as a tool for clonal discrimination in Streptococcus dysgalactiae subsp. equisimilis	31
A nanoluciferase-tagged Schmallenberg virus (SBV): an efficient tool for measuring and tracking viral infection dynamics	30
Limitations of antimicrobial agent choice based on MIC value against Pseudomonas aeruginosa	28
A viable but nonculturable state of Mycobacterium avium in response to macrolide antibiotics: a recipe for relapses?	28
Targeted detection of Helicobacter pylori resistance to clarithromycin and levofloxacin using single-cell Raman spectroscopy	27
Evaluation of anti-biofilm effect of antimicrobial sonodynamic therapy-based periodontal ligament stem cell-derived exosome-loaded kojic acid on Enterococcus faecalis biofilm	24
Evaluation of the World Health Organization Global Invasive Bacterial Vaccine-Preventable Disease (IB-VPD) Surveillance Network’s Laboratory External Quality Assessment Programme, 2014–2019	23
Clinical evaluation of two commercial PCR kits for the detection of nonviral sexually transmitted infections	23
Changes in serum amyloid A, plasma high-density lipoprotein cholesterol and apolipoprotein A-I as useful biomarkers for Mycobacterium tuberculosis infection	22
Class 1 integrons in clinical and swine industry isolates of Salmonella Typhimurium from Colombia, dating 1997 to 2017	22
Extended-spectrum beta-lactamases: definition, history, an update on their genetic environment and detection methods	21
Identification of consensus head and neck cancer-associated microbiota signatures: a systematic review and meta-analysis of 16S rRNA and The Cancer Microbiome Atlas datasets	21
Corrigendum: Genomic characterization of Haemophilus influenzae harbouring an exogenous resistance gene	20
Gut microbiota associated with the mitigation effect of synbiotics on adverse events of neoadjuvant chemotherapy in patients with esophageal cancer: A retrospective exploratory study	19
Novel automated antifungal susceptibility testing system for yeasts based on dual-detection algorithm of turbidimetry and colorimetry	19
Technologies to decontaminate bacterial biofilm on hospital surfaces: a potential new role for cold plasma?	19
Erratum: The Ebola virus – going beyond the bleeding edge	19
Effector genes of type III secretion system and biofilm formation in virulent Pseudomonas aeruginosa isolates carrying bla KPC-2 and bla PDC-5 genes in hospital environment	19
Erratum: Dysbiosis–epigenetics–immune system interaction and ageing health problems	18
Sertraline has in vitro activity against both mature and forming biofilms of different Candida species	18
Fosfomycin resistance in extended-spectrum beta-lactamase producing Escherichia coli isolated from urinary tract-infected patients in a tertiary care hospital	18
Mechanism of azole resistance in Candida glabrata isolates from India: clinical vs. induced perspectives	17

CXCR2 perturbation promotes Staphylococcus aureus implant-associated infection	17
Utility of in-house and commercial PCR assay in diagnosis of Covid-19 associated mucormycosis in an emergency setting in a tertiary care center	17
MARGINAL NOTES, January 2026. The quest for proto-sepsis	16
Clinical and public health implications of increasing notifications of LEE-negative Shiga toxin-producing Escherichia coli in England, 2014–2022	16
In vitro and in silico assessment of anti-biofilm and anti-quorum sensing properties of 2,4-Di-tert butylphenol against Acinetobacter baumannii	16
Effects of novel organoantimony compounds on the fungal pathogen Cryptococcus neoformans	16
Targeted ‘knock out’ therapy with a combination antimicrobial regimen restores treatment options in the management of extensively drug-resistant carbapenemase-producing organisms	15
The lingering legacy of one letter in antimicrobial susceptibility testing	14
In vitro activity of imipenem/relebactam against piperacillin/tazobactam-resistant and meropenem-resistant non-Morganellaceae Enterobacterales and Pseudomonas aeruginosa collected from patients with b	14
Protein expression profiling, in silico classification and pathway analysis of cariogenic bacteria Streptococcus mutans under bacitracin stress conditions	14
Concordance between upper and lower airway microbiota in children with cystic fibrosis	14
Chronic Strongyloides stercoralis infection in Fijian migrants to the UK	14
Delays to treatment initiation and emergence of drug resistance among new adult tuberculosis patients in Tigray, Northern Ethiopia	14
Genetic characteristics of azithromycin-resistant Neisseria gonorrhoeae collected in Hyogo, Japan during 2015–2019	14
Genetic association of gut microbiota with osteoarthritis: a multivariable Mendelian randomization study considering medication use	14
Genomic insights into extended-spectrum β-lactamase- and plasmid-borne AmpC-producing Escherichia coli transmission between humans and livestock in rural Cambodia	14
SARS-CoV-2 in outdoor air following the third wave lockdown release, Portugal, 2021	13
Introducing biomarkers for invasive fungal disease in haemato-oncology patients: a single-centre experience	13
MARGINAL NOTES, June 2023 – running on empty	13
Development of multiplex real-time PCR for detection of clarithromycin resistance genes for the Mycobacterium abscessus group	13
Antifungal activity and potential mechanism of action of Huangqin decoction against Trichophyton rubrum	12
Evaluation of the combined use of the Sepsityper Kit with the Clearview PBP2a assay for identification of staphylococci strains and detection of their methicillin resistance directly from positive blo	12
Ozone water enema activates SIRT1-Nrf2/HO-1 pathway to ameliorate gut dysbiosis in mice receiving COVID-19 patient-derived faecal microbiota	12
Multi-drug-resistant tuberculosis and its associated factors among pulmonary tuberculosis patients linked to first-line anti-tuberculosis drugs in north-west Ethiopia	12
The emerging threat of Japanese encephalitis in Australia: is it the time to worry?	12
Launching the Clostridioides difficile collection	12
Lessons learned: drive-through COVID-19 clinic testing during an adaptive epidemic response and a point-of-care test assessment of a computer-read rapid lateral flow immunoassay with fluorescence-base	12
Towards an update on the antimicrobial use in Adult Care Units in Brazil: insights from multi-hospital prevalence study	11
Paecilomyces cicadae-fermented Radix astragali ameliorate diabetic nephropathy in mice by modulating the gut microbiota	11
Detection of IgM, IgG, IgA and neutralizing antibody responses to SARS-CoV-2 infection and mRNA vaccination	11
MARGINAL NOTES, August, 2023. Something in the air	11
Comparison of the bacterial microbiome in the pharynx and nasal cavity of persistent, intermittent carriers and non-carriers of Staphylococcus aureus	11
A comparison of culture methods and polymerase chain reaction in detecting Clostridioides difficile from hospital surfaces	11
JMM profile: Loop-mediated isothermal amplification (LAMP): for the rapid detection of nucleic acid targets in resource-limited settings	11
Mycoplasma genitalium molecular typing in men with non-gonococcal urethritis discriminates between phylogenetic clusters based on sexual preference and antibiotic resistance	11
Immunoassay-based evaluation of rOmp28 protein as a candidate for the identification of Brucella species	11
Expansion of hantavirus infection during the SARS-CoV-2 pandemic in Bosnia and Herzegovina, 2021	10
Gram differentiation of bacteria by acoustic-enhanced flow cytometry	10
Diagnostic yield of broad-range 16s rRNA gene PCR varies by sample type and is improved by the addition of qPCR panels targeting the most common causative organisms	10
A comparison of routine blood culture methods and multiplex quantitative PCR for detecting pathogens in simulated polymicrobial blood cultures	10
The Apoprotein E4 isotype does not affect the severity of COVID-19 infection and other flu-like syndromes	10
Quantifying patient- and hospital-level antimicrobial resistance dynamics in Staphylococcus aureus from routinely collected data	10
Mucormycosis-causing fungi in humans: a meta-analysis establishing the phylogenetic relationships using internal transcribed spacer (ITS) sequences	10
Changes in the gut microbiota in mice exposed to chronic intermittent hypoxia	10
Whole-genome analysis of Haemophilus influenzae strains isolated from persons with cystic fibrosis	10
Disinfection methods of dental unit waterlines contamination: a systematic review	10
Interpreting diagnosis outcomes for tuberculosis to timely and reliably predict non-tuberculosis mycobacteria isolation	10
New generation fluoroquinolone sitafloxacin could potentially overcome the majority levofloxacin and moxifloxacin resistance in multidrug-resistant Mycobacterium tuberculosis	10
Transient reemergence of Bordetella parapertussis in France in 2022	9
Molecular tracking of carbapenem-resistant Acinetobacter baumannii clinical isolates: a multicentre study over a 4-year period across eastern China	9

Robust prediction of colorectal cancer via gut microbiome 16S rRNA sequencing data	9
Colistin utilization at a tertiary hospital in South Africa: an opportunity for antimicrobial stewardship practices	9
Phenotypic diversity of type III secretion system activity in enteropathogenic Escherichia coli clinical isolates	9
Corynebacterium kroppenstedtii breast abscesses in context, a retrospective cohort study	9
Network-wide analysis of the Serosep EntericBio Gastro Panel 2 for the detection of enteric pathogens in Public Health Wales microbiology laboratories	9
The effect of daily usage of Listerine Cool Mint mouthwash on the oropharyngeal microbiome: a substudy of the PReGo trial	9
Dientamoeba fragilis: a story of contradictions	9
The changes of gut microbiota and metabolites in different drug-induced liver injuries	9
Clinical characteristics and outcomes of viral respiratory infections in allogeneic haematopoietic stem cell transplantation recipients: a single-centre experience	9
Hidden bugs in a newly opened hospital: the distribution of skin microbiota among healthcare workers in a newly opened teaching hospital	9
Deciphering the impact of Acinetobacter baumannii on human health, and exploration of natural compounds as efflux pump inhibitors to treat multidrug resistance	9
Clinical and microbiological investigation into mixed growth urine cultures	9
Long-term surveillance of group B Streptococcus strains isolated from infection and colonization in pregnant women and newborns	8
Evaluation of NG-Test CARBA 5 for the detection of carbapenemase-producing Gram-negative bacilli	8
Establishing breakpoints for amoxicillin/clavulanate and ampicillin/sulbactam for rapid antimicrobial susceptibility testing directly from positive blood culture bottles	8
Repurposing the non-steroidal anti-inflammatory drug diflunisal as an adjunct therapy with amphotericin B against mucoralean fungi	8
Exploring interspecies differences in ex vivo models of Pseudomonas aeruginosa keratitis: a comparative study of human, pig and sheep corneas	8
Characterization of a Helicobacter pylori strain with high biofilm-forming ability	8
JMM Profile: Trichosporon yeasts: from superficial pathogen to threat for haematological-neutropenic patients	8
Effect of nucleic acid concentration method on Severe Acute Respiratory Syndrome Coronavirus 2 detection sensitivity in aircraft wastewater	8
Overview of US public health laboratory leadership development programmes and implementation opportunities	8
Emergence of carbapenem-resistant Pseudomonas alcaligenes and Pseudomonas paralcaligenes clinical isolates with plasmids harbouring bla IMP-1 in Japan	8
Molecular epidemiology of rodent-borne Leptospira spp. in Sri Lanka: identification of novel sequence types and previously unrecognized reservoir animals	8
Dilemma and a way out for bacterial biofilm research	8
Evaluating the use of whole-genome sequencing and Sanger emm typing in guiding the identification and public health management of invasive group A Streptococcus clusters and outbreaks in England	8
Multiple mechanisms of linezolid resistance in Staphylococcus haemolyticus detected by whole-genome sequencing	8
In vitro activity of tubercidin against Mycobacterium tuberculosis and nontuberculosis Mycobacteria	7
Invasive Aggregatibacter infection: shedding light on a rare pathogen in a retrospective cohort analysis	7
Shaping the future of Leptospira serotyping	7
Impact of the COVID-19 restrictions on the epidemiology of Cryptosporidium spp. in England and Wales, 2015–2021: a time series analysis	7
Exploration of the distribution of intestinal bacteria in mice under normal and intestinal leakage (IBD) conditions	7
In vitro efficacy of antibiotic loaded calcium sulfate beads (Stimulan Rapid Cure) against polymicrobial communities and individual bacterial strains derived from diabetic foot infections	7
Abf1 negatively regulates the expression of EPA1 and affects adhesion in Candida glabrata	7
Evaluation and validation of a commercial ELISA versus the in vitro toxin neutralization assay for determination of diphtheria anti-toxin in human serum	7
Integrated analysis of intestinal microbiota and host gene expression in colorectal cancer patients	7
Antibiotic exposure exacerbates acute-on-chronic liver failure via gut microbiota imbalance and secondary liver lesion	7
mgpB genotyping and genetic diversity for antimicrobial resistance of Mycoplasma genitalium	7
Latroeggtoxin-VI improves depression by regulating the composition and function of gut microbiota in a mouse model of depression	7
Development of novel broad-range pan-genus PCR assays for the detection of Tropheryma species	7
A systematic approach to microbial forensics	7
JMM Profile: Brachyspira species: the causative agent of Avian Intestinal Spirochaetosis	7
Population structure, antibiotic resistance and molecular characteristics of Streptococcus pneumoniae causing invasive disease in Hubei, China	7
Antimicrobial spectrum against wound pathogens and cytotoxicity of star-arranged poly-l-lysine-based antimicrobial peptide polymers	7
Antifungal potential of silver nanoparticles stabilized with the flavonoid naringenin	6
The cystic fibrosis pathogen Achromobacter xylosoxidans inhibits biofilm formation of Pseudomonas aeruginosa	6
Regulation of virulence factors of Pseudomonas aeruginosa by Scutellaria baicalensis, Prunella vulgaris and antimicrobial peptide LL-37	6
Next-generation sequencing for the diagnosis of Listeria monocytogenes meningoencephalitis: a case series of five consecutive patients	6
Advancing rapid diagnostics for bloodstream infections: a perspective on scattered light integrated collection technology	6
Clostridioides difficile detection and infection in children: are they just small adults?	6
Susceptibility of Gram-negative bacteria from blood cultures assessed by a rapid antimicrobial susceptibility assay, the VITEK® Reveal™: a preliminary study	6
Combined oropharyngeal/nares and nasopharyngeal swab sampling remain effective for molecular detection of SARS-CoV-2 Omicron variant	6
Evaluating the accuracy of the MBT Lipid Xtract Kit for assessing colistin resistance in comparison to broth microdilution	6
Serotype distribution and antimicrobial resistance of Streptococcus pneumoniae in paediatric patients in Japan (2020–2023)	6
Lower gastrointestinal tract dysbiosis in persistent critical illness: a systematic review	6
Effect of proton pump inhibitors on susceptibility and melanogenesis of Sporothrix species	6
Bacteria associated with infectious keratoconjunctivitis outbreak in confined lambs	6
JMM Profile: Sindbis virus, a cause of febrile illness and arthralgia	6
Characterization of invasive meningococcal disease case isolates in Atlantic Canada, 2014 to 2020: spatial–temporal variations of clones and predicted meningococcal B vaccine coverage	6
Oral microbiota signatures in obesity with or without acanthosis nigricans in a Chinese cohort	6
Genomic characterization of colistin resistance in Klebsiella spp. under the pressure of colistin	6
Effect of co-administration of lactobacilli S-layer proteins on immune response against S-layer proteins from pathogenic Clostridioides difficile	6
Altered intestinal Streptococcus anginosus and 5α-reductase gene levels in patients with hepatocellular carcinoma and elevated Bacteroides stercoris in atezolizumab/bevacizumab non-responders	6
JMM Profile: West Nile virus	6
Molecular characterization of Pseudomonas aeruginosa from diabetic foot infections in Tunisia	6
Corrigendum: Lactobacillus fermentum strains of dairy product origin adhere to mucin and survive digestive juices	6
Inactivation of Candida albicans, Staphylococcus aureus and multidrug-resistant Escherichia coli with dielectric barrier discharged cold atmospheric plasma: a comparative study with antimicrobial drug	6
Massive sequencing of the V3–V4 hypervariable region of bronchoalveolar lavage from patients with COVID-19 and VAP reveals the collapse of the pulmonary microbiota	6
Evaluation of GeneXpert MTB/Rif Ultra assay performance on formalin-fixed paraffin-embedded tissues for Mycobacterium tuberculosis detection	6
Xpert MTB/RIF Ultra performance on bronchial specimens in diagnosing pulmonary tuberculosis in Vancouver, Canada	6
Impact of extreme weather events on the occurrence of infectious diseases in Belgium from 2011 to 2021	6
Sensitivity and specificity of DPP® Fever Panel II Asia in the diagnosis of malaria, dengue and melioidosis	6
Efficacy of ceftobiprole in a murine model of bacteremia and disseminated infection	6
Import of global high-risk clones is the primary driver of carbapenemase-producing Pseudomonas aeruginosa in Norway	5
Ciprofloxacin prophylaxis during haematopoietic cell transplantation: a role for use in patients with germ cell tumours?	5
CLEC4A and CLEC12B C-type lectin receptors mediate interactions with Pneumocystis cell wall components	5
Marginal notes – August 2022	5
PET-CT for characterising TB infection (TBI) in immunocompetent subjects: a systematic review	5
Concordance analysis between Human Papillomavirus genotyping assay and PCR-reverse spot hybridization for the detection of Human Papillomavirus infection	5
Molecular typing of reduced susceptibility of Acinetobacter calcoaceticus–baumannii complex to Chlorhexidine in Turkey by pulsed-field gel electrophoresis	5
Commercial molecular diagnostic methods in infectious diseases: keeping up with the pathogens	5

Bone and joint tuberculosis in paediatrics: a 13-year retrospective study	5
Complete genome identified of clinical isolate Prototheca	5
Assessing antimicrobial resistance profiles of Salmonella enterica in the pork production system	5
Pulmonary cryptococcosis in routine care: the clinical–radiologic spectrum and transparent evidence-tier reporting (confirmed versus presumed) among patients with no recorded immunocompromising condit	5
Building an antimicrobial stewardship model for a public-sector hospital: a pre-implementation study	5
Mutations in atpG2 may confer resistance to gentamicin in Listeria monocytogenes	5
Serum levels of type I interferon (IFN-I) is associated with the severity of COVID-19	5
Enhanced monitoring of healthcare shower water in augmented and non-augmented care wards showing persistence of Pseudomonas aeruginosa despite remediation work	5
Assessment of SARS-CoV-2 genome sequence recovery from four lateral flow device products available in the UK	5
Enhanced laboratory surveillance study of Campylobacter species in England	5
The Ebola virus – going beyond the bleeding edge	5
16S rDNA analysis of osteoporotic rats treated with osteoking	5
Microbiological and molecular screening of Candida spp. isolated from genital tract of asymptomatic pregnant women	5
A comparative analysis of the second and third wave of the Covid-19 pandemic: an experience from a tertiary care hospital in Western India	5
A retrospective cross-sectional observational study of SARS-CoV-2 reinfection in La Ribera Health Department, Valencia, Spain	5
Thrombotic storm in coronavirus disease 2019: from underlying mechanisms to its management	5
Evaluation of whole-genome sequencing protocols for detection of antimicrobial resistance, virulence factors and mobile genetic elements in antimicrobial-resistant bacteria	5
Prediction of genome-wide imipenem resistance features in Klebsiella pneumoniae using machine learning	5
Strain-specific persistence of Burkholderia cenocepacia in the C3HeB/FeJ mouse model of pulmonary infection	5
Waddlia chondrophila: from a bovine abortigenic agent to a potential cause of human adverse pregnancy outcomes	5
SARS-CoV-2 and Prevotella spp.: friend or foe? A systematic literature review	5
MARGINAL NOTES, December 2023: Sepsis waits for no-one	5
Commercial farmed swine harbour a variety of pathogenic bacteria and antimicrobial resistance genes	5
Prevalence of selected Shiga toxin-producing Escherichia coli vaccine antigen genes among two geographically distinct ruminant populations	5
Polymyxin heteroresistance in Klebsiella oxytoca	5
Surveillance of invasive meningococcal disease in southern Brazil: considerations of an immunization programme	5
Combining Gram stain and 16S qPCR improved diagnostic accuracy for suspected pneumonia and could become a new metric in the rapid diagnosis of lower respiratory tract infections	5
Corrigendum: Species-level quantification of Faecalibacterium spp. in faeces of healthy Japanese adults	5
Preliminary view of the distribution and spread of the plasmid-mediated resistance genes in Glaesserella parasuis	5
Evaluation of the efficacy of tongue swab and saliva as samples for testing COVID-19 infection in symptomatic cases in comparison with nasopharyngeal swab	5
Rapid determination of antimicrobial susceptibility of Gram-negative bacteria from clinical blood cultures using a scattered light-integrated collection device	5