Journal of Microscopy

Article	Citations
Advanced cryo‐tomography workflow developments – correlative microscopy, milling automation and cryo‐lift‐out	53
Cryo‐FIB‐lift‐out: practically impossible to practical reality	46
Fluorescence visualization of cellulose and pectin in the primary plant cell wall	45
Comparing Xe+pFIB and Ga+FIB for TEM sample preparation of Al alloys: Minimising FIB‐induced artefacts	33
QUAREP‐LiMi: A community‐driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy	32
An introduction to cryo‐FIB‐SEM cross‐sectioning of frozen, hydrated Life Science samples	31
Gold nanoparticles interacting with synthetic lipid rafts: an AFM investigation	26
Three‐dimensional reconstruction of porous polymer films from FIB‐SEM nanotomography data using random forests	25
The plant endoplasmic reticulum: an organized chaos of tubules and sheets with multiple functions	24
Plant Golgi ultrastructure	22
Plasmons in MoS2 studied via experimental and theoretical correlation of energy loss spectra	22
Correlia: an ImageJ plug‐in to co‐register and visualise multimodal correlative micrographs	20
Reconstruction of highly porous structures from FIB‐SEM using a deep neural network trained on synthetic images	20
Semi‐automatic stitching of filamentous structures in image stacks from serial‐section electron tomography	18
Effect of aging and rejuvenation on adhesion properties of modified asphalt binder based on AFM	18
Hot deformation behaviour of bimodal sized Al2O3/Al nanocomposites fabricated by spark plasma sintering	17
pycotem: An open source toolbox for online crystal defect characterization from TEM imaging and diffraction	16
Deep learning‐based automatic inpainting for material microscopic images	15
Cryo‐FIB preparation of whole cells and tissue for cryo‐TEM: use of high‐pressure frozen specimens in tubes and planchets	15
Robust deep learning optical autofocus system applied to automated multiwell plate single molecule localization microscopy	13
Complex roles of Rabs and SNAREs in the secretory pathway and plant development: a never‐ending story	12
Challenges and advances in optical 3D mesoscale imaging	12
Visualising endocytosis in plants: past, present, and future	12
Using hybrid atomic force microscopy and infrared spectroscopy (AFM‐IR) to identify chemical components of the hair medulla on the nanoscale	11
Analysis of misidentifications in TEM characterisation of organic‐inorganic hybrid perovskite material	11

Wavefront‐sensorless adaptive optics with a laser‐free spinning disk confocal microscope	11
Subcellular structure and behaviour in fungal hyphae	11
AutoIHC‐Analyzer: computer‐assisted microscopy for automated membrane extraction/scoring in HER2 molecular markers	10
Kikuchi pattern simulations of backscattered and transmitted electrons	10
Assessment of the impacts of sample preparation on the use of EDS for analysing recycled asphalt blending	10
How innovations in methodology offer new prospects for volume electron microscopy	10
Sensitivity of remote focusing microscopes to magnification mismatch	10
A review of high‐resolution microscopic ghost imaging with a low‐dose pseudothermal light	10
Laboratory phase‐contrast nanotomography of unstained Bombus terrestris compound eyes	9
Functional organisation of the endomembrane network in the digestive gland of the Venus flytrap: revisiting an old story with a new microscopy toolbox	9
Light microscopy of the endoplasmic reticulum–membrane contact sites in plants	9
Foldscope as a primary diagnostic tool for oral and urinary tract infections and its effectiveness in oral health education	9
Living on the edge: the role of Atgolgin‐84A at the plant ER–Golgi interface	9
Multimodal image reconstruction from tomographic diffraction microscopy data	8
Analysis of the nanoscale phase characteristics of bitumen and bitumen in mastics and mixtures via AFM	8
Carbonated wollastonite – An effective supplementary cementitious material?	8
Release of insulin granules by simultaneous, high‐speed correlative SICM‐FCM	8
Quantitative mapping of high modulus materials at the nanoscale: comparative study between atomic force microscopy and nanoindentation	8
A practical criterion for focusing of unstained cell samples using a digital holographic microscope	8
Fast, high‐precision autofocus on a motorised microscope: Automating blood sample imaging on the OpenFlexure Microscope	7
4H‐SiC surface morphology after Al ion implantation and annealing with C‐cap	7
Full‐field strain of regenerated bone tissue in a femoral fracture model	7
Microstructural examination of carbonated 3D‐printed concrete	7
Fluorescence fluctuation‐based super‐resolution microscopy: Basic concepts for an easy start	7
Evaluation of correlated studies using liquid cell and cryo‐transmission electron microscopy: Hydration of calcium sulphate and the phase transformation pathways of bassanite to gypsum	7
Three‐dimensional transfer function of optical microscopes in reflection mode	7
Nano‐atomic scale hydrophobic/philic confinement of peptides on mineral surfaces by cross‐correlated SPM and quantum mechanical DFT analysis	7
A workflow for 3D‐CLEM investigating liver tissue	7
Calibration by differentiation – Self‐supervised calibration for X‐ray microscopy using a differentiable cone‐beam reconstruction operator	7
Open‐source deep learning‐based air‐void detection algorithm for concrete microscopic images	7
Quantification of the bone lacunocanalicular network from 3D X‐ray phase nanotomography images	7
Quantitative phase‐mode electrostatic force microscopy on silicon oxide nanostructures	7
High‐accuracy, direct aberration determination using self‐attention‐armed deep convolutional neural networks	7
Convolutional neural networks for segmentation of FIB‐SEM nanotomography data from porous polymer films for controlled drug release	6
Reconstructing 3D digital model without distortion for poorly conductive porous rock by nanoprobe‐assisted FIB‐SEM tomography	6
Approaches to training multiclass semantic image segmentation of damage in concrete	6
Practical segmentation of nuclei in brightfield cell images with neural networks trained on fluorescently labelled samples	6
Quantitative analysis of backscattered‐electron contrast in scanning electron microscopy	6
Correlative imaging using super‐resolution fluorescence microscopy and soft X‐ray tomography at cryogenic temperatures provides a new way to assess virosome solutions for vaccine development	6
Analysing neutron radiation damage in YBa2Cu3O7–x high‐temperature superconductor tapes	6
Erythrocyte viscoelastic recovery after liver transplantation in a cirrhotic patient affected by spur cell anaemia	6
Optimizing and applying high‐resolution, in‐line laboratory phase‐contrast X‐ray imaging for low‐density material samples	6
Towards super‐resolved terahertz microscopy for cellular imaging	6
Trainable segmentation for transmission electron microscope images of inorganic nanoparticles	6
Protein secondary structure signatures from energy loss spectra recorded in the electron microscope	6
Workflow for high‐resolution phase segmentation of cement clinker from combined BSE image and EDX spectral data	6
Wear debris released by hip prosthesis analysed by microcomputed tomography	6
Individual fibre separation in 3D fibrous materials imaged by X‐ray tomography	6
Optical comparison between micro‐CT and OCT in imaging of marginal composite adaptation: Observational study	6
Real‐time monitoring of carbonation of hardened cement pastes using Raman microscopy	6

Atomic force microscopy as an imaging tool to study the bio/nonbio complexes	6
Challenges and opportunities for bioimage analysis core‐facilities	6
A method for reproducible high‐resolution imaging of 3D cancer cell spheroids	6
Mass fractal dimension from 2D microscopy images via an aggregation model with variable compactness	6
Imaging adult C. elegans live using light‐sheet microscopy	6
Estimation of an uncertainty budget and performance measurement for a dual‐wavelength Twyman‐Green interferometer	5
A method for direct imaging of x–z cross‐sections of fluorescent samples	5
Stereometric and fractal analysis of granulated silver films used in thin‐film hybrid structures	5
Local Kikuchi band detection in electron backscatter diffraction patterns for enhanced pattern indexing	5
PUMA – An open‐source 3D‐printed direct vision microscope with augmented reality and spatial light modulator functions	5
Method for acquiring accurate coordinates of the source point in electron backscatter diffraction	5
intER‐ACTINg: The structure and dynamics of ER and actin are interlinked	5
Segmentation, retardation and mass approximation of birefringent particles on a standard light microscope	5
DeepFRAP: Fast fluorescence recovery after photobleaching data analysis using deep neural networks	5
Digital scanned laser light‐sheet fluorescence lifetime microscopy with wide‐field time‐gated imaging	5
Correlative light and volume electron microscopy (vCLEM): How community participation can advance developing technologies	5
What is the structure of our infrastructure? A review of UK light microscopy facilities	5
Measuring the randomness of micro‐ and nanostructure spatial distributions: Effects of scanning electron microscope image processing and analysis	5
X‐ray tomography for the advancement of laser powder bed fusion additive manufacturing	5
Two‐stage particle separation channel based on standing surface acoustic wave	5
Imaging error compensation method for through‐focus scanning optical microscopy images based on deep learning	4
Simple automation of SEM‐EDS spectral maps analysis with Python and the edxia framework	4
Time‐lapse visualization of shrinking soot in diesel particulate filter during active‐regeneration using field emission scanning electron microscopy	4
The effects of measurement parameters on the cancerous cell nucleus characterisation by atomic force microscopy in vitro	4
An x‐ray microanalytical method for measuring in vivo element and water concentrations, relating to osmoregulation, in cells and tissues of the posterior eye	4
Elemental mapping of labelled biological specimens at intermediate energy loss in an energy‐filtered TEM acquired using a direct detection device	4
The relation between the average diameter of CNTs on Ni–Cu @ a‐C:H catalyst with the optical absorption edge and the optical dispersion parameters	4
Morphological analysis and grain size distribution of SnO2 nanoparticles via digital image processing across diverse calcination temperatures	4
Evaluation and application of a new scintillator‐based heat‐resistant back‐scattered electron detector during heat treatment in the scanning electron microscope	4
Automatic three‐dimensional segmentation of mouse embryonic stem cell nuclei by utilising multiple channels of confocal fluorescence images	4
AFM and Raman study of graphene deposited on silicon surfaces nanostructured by ion beam irradiation	4
Optimizing the SEM specimen preparation method for accurate microanalysis of carbon nanotube/nanocluster hybrids	4
A perspective of fluorescence microscopy for cellular structural biology with EGFR as witness	4
Improving light microscopy training routines with evidence‐based education	4
The incorporation of Cu into the clinker phases	4
Determination of the refractive index and wavelength‐dependent optical properties of few‐layer CrCl within the Fresnel formalism	4
Quantitative SEM characterisation of ceramic target prior and after magnetron sputtering: a case study of aluminium zinc oxide	4
X‐ray microtomosynthesis of unstained pathology tissue samples	4
Expansion microscopy: A revolution in diagnostic pathology	4
Automated tracking of S. pombe spindle elongation dynamics	4
A through‐focus scanning optical microscopy dimensional measurement method based on deep‐learning classification model	4
Second harmonic generation microscopy using pixel reassignment	4
Comparison of cell volume measurements by fluorescence and absorption exclusion microscopy	3
openFrame: A modular, sustainable, open microscopy platform with single‐shot, dual‐axis optical autofocus module providing high precision and long range of operation	3
The challenges and opportunities of open‐access microscopy facilities	3
Anion intercalated graphite: a combined electrochemical and tribological investigation by in situ AFM	3
Ultrastructural characterisation of young and aged dental enamel by atomic force microscopy	3
Real‐Time Optical Vascular Imaging, a new method for the diagnosis and monitoring of oral diseases	3
Depth estimation method of surface of micropart in microassembly space based on microscopic vision tomographic scanning images	3
Reconstruction of calcium silicate hydrates using multiple 2D and 3D imaging techniques: Light microscopy, μ‐CT, SEM, FIB‐nT combined with EDX	3
3D differential interference contrast microscopy using polarisation‐sensitive tomographic diffraction microscopy	3
ToTEM: A software for fast TEM image simulation	3
Establishing a reference focal plane using beads for trypan‐blue‐based viability measurements	3
Assessing conformal thin film growth under nonstochastic deposition conditions: application of a phenomenological model of roughness replication to synthetic topographic images	3
Automated particle recognition for engine soot nanoparticles	3
Poly‐L‐lysine/hyaluronan nanocarriers as a novel nanosystem for gene delivery	3
Integrated opto‐mechanical cantilever sensor with a rib waveguide	3
Made to measure: An introduction to quantifying microscopy data in the life sciences	3
Seeing clearly – Plant anatomy through Katherine Esau's microscopy lens	3
X‐ray computed tomography evaluations of additive manufactured multimaterial composites	3
Phase determination in dual phase steels via HREBSD‐based tetragonality mapping	3
Method for quantifying the reaction degree of slag in alkali‐activated cements using deep learning‐based electron microscopy image analysis	3
Thickness profiling of electron transparent aluminium alloy foil using convergent beam electron diffraction	3
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Laser‐based sample preparation for high‐resolution X‐ray‐computed tomography of glasses and glass ceramics	3
Nanoscale morphology and fractal analysis of TiO2 coatings on ITO substrate by electrodeposition	3
In situ liquid SEM imaging analysis revealing particle dispersity in aqueous solutions	3
Multi‐foci parallelised RESOLFT nanoscopy in an extended field‐of‐view	3
Automated tilt compensation in acoustic microscopy	3
Effectual accuracy of OCT image retinal segmentation with the aid of speckle noise reduction and boundary edge detection strategy	3
Physical properties and photocatalytic activity of Cr‐doped TiO2 nanoparticles	3
Exploring confocal laser scanning microscopy (CLSM) and fluorescence staining as a tool for imaging and quantifying traces of marine microbioerosion and their trace‐making microendoliths	3
Metal configurations on 2D materials investigated via atomic resolution HAADF stem	3
Microscopical palynology: Birch woodland expansion and species hybridisation coincide with periods of climate warming during the Holocene epoch in Iceland	3
Evaluation of classification methods for identifying multiwalled carbon nanotubes collected on mixed cellulose ester filter media	2
Adsorption of PCE in alkali‐activated materials analysed by fluorescence microscopy	2
A multi‐technique study of corrosion products at the steel–concrete interface under two exposure conditions	2
Perspective of fibre‐optical microendoscopy with microlenses	2
In‐depth polarisation resolved SHG microscopy in biological tissues using iterative wavefront optimisation	2
Reconstruction of 3D greyscale image for reservoir rock from a single image based on pattern dictionary	2

Correction and quantification of MTF in scanning laser microscopy	2
Experimental test of the geometric model of image formation in bright‐field microscopy	2
Combining atomic force microscopy with complementary techniques for multidimensional single‐cell analysis	2
Analysis of 3D elemental distribution in nanomaterials: Towards higher throughput and dose efficiency	2
Overcoming the challenges of preserving lipid‐rich Cannabis sativa L. glandular trichomes for transmission electron microscopy	2
Microtexture analysis of copper‐doped iron oxide thin films prepared by air pneumatic spray	2
Morphological and Elastic Transition of Polystyrene Adsorbed Layers on Silicon Oxide	2
Effect of trypsin concentration on living SMCC‐7721 cells studied by atomic force microscopy	2
Growth of C‐S‐H phases on different metallic surfaces	2
Site‐specific angular dependent determination of inelastic mean free path of 300 keV electrons in GaN nanorods	2
Towards real‐time STEM simulations through targeted subsampling strategies	2
Multislice image simulations of sheared needle‐like precipitates in an Al‐Mg‐Si alloy	2
Identifying rotational symmetry axes in Kikuchi patterns by reciprocal vectors	2
Non‐fitting FLIM‐FRET facilitates analysis of protein interactions in live zebrafish embryos	2
In memoriam – Hans Jørgen Gottlieb Gundersen	2
ModularImageAnalysis (MIA): Assembly of modularised image and object analysis workflows in ImageJ	2
Quantification of cracks in concrete thin sections considering current methods of image analysis	2
Neural network fast‐classifies biological images through features selecting to power automated microscopy	2
CellProfiler plugins – An easy image analysis platform integration for containers and Python tools	2
First visualisation of bacterial biofilms in 3D porous media with neutron microtomography without contrast agent	2
Direct etching of nano/microscale patterns with both few‐layer graphene and high‐depth graphite structures by the raster STM electric lithography in the ambient conditions	2
Segmentation of SEM images of multiphase materials: When Gaussian mixture models are accurate?	2
Marked point process analysis of epidermal nerve fibres	2
A new approach to etching low‐carbon microalloyed steels to reveal prior austenite grain boundaries and the dual‐phase microstructure	2
‘Branded’ microscopy core facilities – Mutually beneficial partnerships between academia and industry	2
A case study of distress mechanism(s) in a concrete structure foundation in the saturated zone and above the saturated zone	2
High‐resolution optical microscopy for characterising microstructural deformation in microtensile testing	2
L's approach: illumination pattern estimation technique for optical microscopy	1
A perspective into full cost recovery within a core facility/shared resource lab	1
Mitophagy in plants: Emerging regulators of mitochondrial targeting for selective autophagy	1
Field‐dependent abundances of hydride molecular ions in atom probe tomography of III‐N semiconductors	1
Assessment of the self‐healing capacity of cementitious materials through active thin sections	1
A method for extraction of exosomes from breast tumour cells and characterisation by transmission electron microscopy	1
Facet type determination based on combined atomic force microscopy and electron backscatter diffraction	1
Comments on Dr Whittaker's letter and the article	1
Unconvincing evidence that Beale's Mathematician is Robert Hooke	1
Incorporation of antimony‐bearing mining wastes into clinker Portland raw feed: The difficulty of Sb analysis in calcium silicates	1
The effect of specimen preparation on the nanostructure of SLES aqueous solutions observed by cryo‐TEM	1
Wear mechanisms description in nanoscale by SEM/TEM of multilayer Zr/ZrN coatings in dependence on phases ratio	1
Advanced characterisation of 3D structure and porosity of ordinary portland cement (OPC) mortar using plasma focused ion beam tomography and X‐ray computed tomography	1
Surface‐enhanced Raman spectroscopy and ultrastructural analysis of penicillin‐producing Penicillium rubens strains	1
Microstructural evolution during short heat treatment of constrained groove pressed Cu‐5%Zn alloy	1
Pairwise interaction Markov model for 3D epidermal nerve fibre endings	1
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Carbon‐film‐based Zernike phase plates with smooth thickness gradient for phase‐contrast transmission electron microscopy with reduced fringing artefacts	1
The dissociation of (a+c) misfit dislocations at the InGaN/GaN interface	1
More than just ‘added value’: The perils of not establishing shared core facilities in resource‐constrained communities	1
Estimating microstructural feature distributions from image data using a Bayesian framework	1
The evolution of indium precipitation in gallium focused ion beam prepared samples of InGaAs/InAlAs quantum wells under electron beam irradiation	1
Addressing multiscale microbial challenges using the Mesolens	1
The role of CuO on the microstructure and phase composition of SO3‐activated clinker	1
STED nanoscopy – A novel way to image the pore space of geological materials	1
Practical strategies for robust and inexpensive imaging of aqueous‐cleared tissues	1
Automatic detection of Kikuchi bands based on Radon transform and PPHT	1
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Scanning electron microscopy and energy dispersive spectrometry analyses of ancient bronze artefacts of the Urartian period from Yegheghnadzor region, Armenia	1
A bird's eye view on microscopy	1
Visualising the effect of freezing on the vascular system of wheat in three dimensions by in‐block imaging of dye‐infiltrated plants	1
Important aspects of investigating optical excitations in semiconductors using a scanning transmission electron microscope	1
Outreach and art – attracting new audiences and encouraging others into sciences	1
Electrolyte pH dependence of composition, roughness parameters, particle diameter and magnetic features of nanostructured Fe‐Co‐Ni/ITO deposits prepared by electrochemical deposition method	1
The restriction of calcium influx in metaphase and post‐metaphase stages of cell division revealed by imaging secondary ion mass spectrometry (SIMS)	1
Comparison of microstructural imaging of the root canal isthmus using propagation‐based X‐ray phase‐contrast and absorption micro‐computed tomography	1
Image quality evaluation for FIB‐SEM images	1
Relations between electron yield and temperature rise under low‐energy electron irradiation for Au element	1
Exploring the microstructure of hydrated collagen hydrogels under scanning electron microscopy	1
Towards quantification of doping in gallium arsenide nanostructures by low‐energy scanning electron microscopy and conductive atomic force microscopy	1
Bridging imaging users to imaging analysis – A community survey	1
An open‐hardware sample mounting solution for inverted light‐sheet microscopes with large detection objective lenses	1
The structure of the eggshell and eggshell membranes of Crocodylus niloticus	1
Methods to expose subsurface objects of interest identified from 3D imaging: The intermediate sample preparation stage in the correlative microscopy workflow	1
A quantitative study of the influence of cement matrix impregnation on yarn pullout strength using combined confocal microscopy and double resin impregnation	1
Several factors influencing energy‐loss near‐edge structure calculations using Wien2k	1
Theoretical model and experimental study on environmental dissipation mechanism of tapping mode atomic force microscope	1
Towards artefact‐free AFM image presentation and interpretation	1
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Dynamic range and background filtering in raster image correlation spectroscopy	1
The effects of despeckling filters on pore size measurements in collagen scaffold micro‐CT data	1
Material characteristics of historic scagliola interiors in Vienna: A view through the microscope	1
Optimized dopant imaging for GaN by a scanning electron microscopy	1
Using the traditional microscope for mineral grain orientation determination: A prototype image analysis pipeline for optic‐axis mapping (POAM)	1
Mesoscale standing wave imaging	1
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A method for the fast and photon‐efficient analysis of time‐domain fluorescence lifetime image data over large dynamic ranges	1
High‐resolution X‐ray tomographic workflow to investigate the stress distribution in vitreous enamel steels	1
Implications of gnomonic distortion on electron backscatter diffraction and transmission Kikuchi diffraction	1
Comparison of the effects of AgNPs on the morphological and mechanical characteristics of cancerous cells	1
The election of women as Fellows of the Royal Microscopical Club	1
Differential phase contrast (DPC) mapping electric fields: Optimising experimental conditions	1