OOIR: Observatory of International Research

Papers

(The TQCC of Journal of Microscopy is 3. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-08-01 to 2025-08-01.)

Article	Citations
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TOC ‐ Issue Information	40
	31
TOC ‐ Issue Information	20
	19
Study on line‐scan profile for a trapezoid line under varying sample temperatures through Monte–Carlo simulation	19
A practical guide to bioimaging research data management in core facilities	18
Self‐pressurised rapid freezing at arbitrary cryoprotectant concentrations	18
Innovating in a bioimaging core through instrument development	18
Pairwise interaction Markov model for 3D epidermal nerve fibre endings	17
A method for crystallographic mapping of an alpha‐beta titanium alloy with nanometre resolution using scanning precession electron diffraction and open‐source software libraries	16
Seeing clearly – Plant anatomy through Katherine Esau's microscopy lens	16
TOC ‐ Issue Information	15
High‐speed 4‐dimensional scanning transmission electron microscopy using compressive sensing techniques	15
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ApoNecV: A macro for cell death type differentiation	14
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Seven‐layer analysis model of an optical waveguide excitation fluorescence microscopy	13
Quantification of cell shape, intracellular flows and transport based on DIC object detection and tracking	13
In‐depth polarisation resolved SHG microscopy in biological tissues using iterative wavefront optimisation	12
Multi‐foci parallelised RESOLFT nanoscopy in an extended field‐of‐view	12
Towards affordable biomedical imaging: Recent advances in low‐cost, high‐resolution optoacoustic microscopy	12
High‐accuracy, direct aberration determination using self‐attention‐armed deep convolutional neural networks	12
Integrated opto‐mechanical cantilever sensor with a rib waveguide	12

Stability of electron ptychography at low electron dose	11
Simple automation of SEM‐EDS spectral maps analysis with Python and the edxia framework	11
Poly‐L‐lysine/hyaluronan nanocarriers as a novel nanosystem for gene delivery	11
Virtual dissection of Aedes aegypti mosquito using phase‐contrast synchrotron microtomography	11
A method for extraction of exosomes from breast tumour cells and characterisation by transmission electron microscopy	11
High‐pressure freezing of mechanically stretched cells	11
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Automated Euler number of the alveolar capillary network based on deep learning segmentation with verification by stereological methods	10
Use of Melinex film for flat embedding tissue sections in LR White	9
Traction force generation in Plasmodium sporozoites is modulated by a surface adhesin	9
Subsurface phase imaging of tapping‐mode atomic force microscopy at phase resonance	9
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Surpassing light inhomogeneities in structured‐illumination microscopy with FlexSIM	9
Challenges and advances in optical 3D mesoscale imaging	9
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Repair effect of Centella asiatica (L.) extract on damaged HaCaT cells studied by atomic force microscopy	9
Using the traditional microscope for mineral grain orientation determination: A prototype image analysis pipeline for optic‐axis mapping (POAM)	8
Development of a deep learning method for phase retrieval image enhancement in phase contrast microcomputed tomography	8
Adsorption of PCE in alkali‐activated materials analysed by fluorescence microscopy	8
Single‐shot differential phase contrast microscopy using ring‐shaped polarisation multiplexing illumination	8
Multicamera simultaneous total internal reflection and interference reflection microscopy	8
Characterisation of bond between cement paste and steel fibres with different surface roughness using SEM	8
CellPhePy: A python implementation of the CellPhe toolkit for automated cell phenotyping from microscopy time‐lapse videos	8
Microscopy at a glance: New poster article series exploring the intersection of art, science and imaging	8
Investigation of the interface of fungal mycelium composite building materials by means of low‐vacuum scanning electron microscopy	8
Subcellular localisation and identification of single atoms using quantitative scanning transmission electron microscopy	8
In memoriam – Hans Jørgen Gottlieb Gundersen	7
Microtexture analysis of copper‐doped iron oxide thin films prepared by air pneumatic spray	7
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ToTEM: A software for fast TEM image simulation	7
Material characteristics of historic scagliola interiors in Vienna: A view through the microscope	7
TOC ‐ Issue Information	7
Flexible implementation of modulated localisation microscopy based on DMD	7
Automatic detection of Kikuchi bands based on Radon transform and PPHT	7
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TOC ‐ Issue Information	7
Fluorescence microscopic investigation of PCE superplasticiser adsorption in calcined clay blended cement	7
Morphological and structural analysis of iron‐rich porcelains excavated from the Jian kiln site of Song dynasty	7
Corrigendum	6
Unveiling the limits of precision in iterative MINFLUX	6
Open‐source hardware‐ and software‐based cryomicroscopy system for investigation of phase transitions in cryobiological research	6
Correction to ‘Non‐fitting FLIM‐FRET facilitates analysis of protein interactions in live Zebrafish embryos’	6
Simple Python‐based methods for analysis and drift‐correction of STM images	6
A Python tool to determine the thickness of the hydrate layer around clinker grains using SEM‐BSE images	6
Microscopic investigation of the optical and morphological properties of iPP/TiO₂ nanocomposite fibres using computed tomography technique	6
Correction to “Image quality evaluation for FIB‐SEM images”	6
Quantitative analysis of human umbilical vein endothelial cell morphology and tubulogenesis	6
A perspective of fluorescence microscopy for cellular structural biology with EGFR as witness	6
Response to Adler and Parmryd	6
TUNA‐EBSD‐CL correlative multi‐microscopy study, on the example of Cu(In,Ga)S₂ solar cell absorber	5

An integrated optical waveguide micro‐cantilever system for chip‐based AFM	5
An automated slide scanning system for membrane filter imaging in diagnosis of urogenital schistosomiasis	5
Primed conversion: The emerging player of precise and nontoxic photoconversion	5
Cryo‐SEM and large volume FIB‐SEM of Arabidopsis cotyledons: Degradation of lipid bodies, biogenesis of glyoxysomes and reorganisation of organelles during germination	5
The effect of the combined addition of copper, lithium and sulphur on the formation of Portland cement clinker	5
TOC ‐ Issue Information	5
Characterisation and correction of polarisation effects in fluorescently labelled fibres	5
Non‐fitting FLIM‐FRET facilitates analysis of protein interactions in live zebrafish embryos	5
Correlation steered scanning with spiral scanning path for AFM to correct image distortion with real‐time compensation	5
Kikuchi pattern simulations of backscattered and transmitted electrons	5
TOC ‐ Issue Information	5
A case study of distress mechanism(s) in a concrete structure foundation in the saturated zone and above the saturated zone	5
Comparison of holotomographic microscopy and coherence‐controlled holographic microscopy	5
Detecting charge transfer at defects in 2D materials with electron ptychography	5
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Comparison of the SMLM technique and the MSSR algorithm in confocal microscopy for super‐resolved imaging of cellulose fibres	4
TOC ‐ Issue Information	4
	4
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Quantifying phase magnitudes of open‐source focused‐probe 4D‐STEM ptychography reconstructions	4
Staying on track – Keeping things running in a high‐end scientific imaging core facility	4
The structure of the eggshell and eggshell membranes of Crocodylus niloticus	4
Comparative study on the Ru ware, Ru‐type ware of Qingliangsi kiln and celadon of Zhanggongxiang kiln	4
Implications of gnomonic distortion on electron backscatter diffraction and transmission Kikuchi diffraction	4
The Journal of Microscopy would like to thank all those referees who reviewed papers for the Journal during 2021. Your assistance and contribution to the Journal is greatly apprec	4
Quantification of surface grinding during the sample preparation of cementitious materials by optical profilometry	4
Diagnostic electron microscopy in human infectious diseases – Methods and applications	4
Handheld cross‐polarised microscope for imaging individual pigmented cells in human skin in vivo	4
Made to measure: An introduction to quantifying microscopy data in the life sciences	4
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Introduction to Festschrift for Professor Tony Wilson	3
Image quality evaluation for FIB‐SEM images	3
Diversity under the microscope: Lessons for building belonging in interdisciplinary spaces from the Women in Imaging + Industry bootcamp	3
Preface to EMABM (Euroseminar on Microscopy Applied to Building Materials) 2022	3
Improving light microscopy training routines with evidence‐based education	3
Two‐stage particle separation channel based on standing surface acoustic wave	3
Optimisation of freeze substitution protocols for the examination of malaria parasite structure by volumetric electron microscopy	3
Data analysis in imaging (DAIM) – A new RMS science section	3
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Automated particle recognition for engine soot nanoparticles	3
Comparison of the effects of AgNPs on the morphological and mechanical characteristics of cancerous cells	3
Influence of alumina ratio on reactions at the surface of alite crystals during cooling	3
Microscopical palynology: Birch woodland expansion and species hybridisation coincide with periods of climate warming during the Holocene epoch in Iceland	3
TOC ‐ Issue Information	3
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Setting up an institutional OMERO environment for bioimage data: Perspectives from both facility staff and users	3
PerfectlyAverage: A classical open‐source software method to determine the optimal averaging parameters in laser scanning fluorescence microscopy	3
Estimating microstructural feature distributions from image data using a Bayesian framework	3
The incorporation of Cu into the clinker phases	3
Fourier ptychography microscopy for digital pathology	3
TOC ‐ Issue Information	3
Quantifying superimposed protein flow dynamics in live cells using spatial filtering and spatiotemporal image correlation spectroscopy	3
Trainable segmentation for transmission electron microscope images of inorganic nanoparticles	3
Ptychographic analysis of human bone marrow‐derived mesenchymal stem cell morphology: The impact of cell senescence	3