OOIR: Observatory of International Research

Papers

(The TQCC of Journal of Microscopy is 3. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-06-01 to 2025-06-01.)

Article	Citations
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TOC ‐ Issue Information	38
	30
TOC ‐ Issue Information	23
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Study on line‐scan profile for a trapezoid line under varying sample temperatures through Monte–Carlo simulation	18
A practical guide to bioimaging research data management in core facilities	18
Self‐pressurised rapid freezing at arbitrary cryoprotectant concentrations	18
Pairwise interaction Markov model for 3D epidermal nerve fibre endings	17
A method for crystallographic mapping of an alpha‐beta titanium alloy with nanometre resolution using scanning precession electron diffraction and open‐source software libraries	17
High‐speed 4‐dimensional scanning transmission electron microscopy using compressive sensing techniques	17
Innovating in a bioimaging core through instrument development	17
TOC ‐ Issue Information	16
Seeing clearly – Plant anatomy through Katherine Esau's microscopy lens	16
Towards affordable biomedical imaging: Recent advances in low‐cost, high‐resolution optoacoustic microscopy	14
High‐pressure freezing of mechanically stretched cells	14
ApoNecV: A macro for cell death type differentiation	14
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Quantification of cell shape, intracellular flows and transport based on DIC object detection and tracking	12
Integrated opto‐mechanical cantilever sensor with a rib waveguide	12
Simple automation of SEM‐EDS spectral maps analysis with Python and the edxia framework	12
In‐depth polarisation resolved SHG microscopy in biological tissues using iterative wavefront optimisation	12
A method for extraction of exosomes from breast tumour cells and characterisation by transmission electron microscopy	11

High‐accuracy, direct aberration determination using self‐attention‐armed deep convolutional neural networks	11
Seven‐layer analysis model of an optical waveguide excitation fluorescence microscopy	11
Poly‐L‐lysine/hyaluronan nanocarriers as a novel nanosystem for gene delivery	10
Multi‐foci parallelised RESOLFT nanoscopy in an extended field‐of‐view	10
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Automated Euler number of the alveolar capillary network based on deep learning segmentation with verification by stereological methods	9
CellPhePy: A python implementation of the CellPhe toolkit for automated cell phenotyping from microscopy time‐lapse videos	9
TOC ‐ Issue Information	9
Subcellular localisation and identification of single atoms using quantitative scanning transmission electron microscopy	9
Challenges and advances in optical 3D mesoscale imaging	8
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Investigation of the interface of fungal mycelium composite building materials by means of low‐vacuum scanning electron microscopy	8
Microscopy at a glance: New poster article series exploring the intersection of art, science and imaging	8
Subsurface phase imaging of tapping‐mode atomic force microscopy at phase resonance	8
Use of Melinex film for flat embedding tissue sections in LR White	8
Using the traditional microscope for mineral grain orientation determination: A prototype image analysis pipeline for optic‐axis mapping (POAM)	8
Single‐shot differential phase contrast microscopy using ring‐shaped polarisation multiplexing illumination	8
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Multicamera simultaneous total internal reflection and interference reflection microscopy	8
Surpassing light inhomogeneities in structured‐illumination microscopy with FlexSIM	8
Repair effect of Centella asiatica (L.) extract on damaged HaCaT cells studied by atomic force microscopy	8
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Microtexture analysis of copper‐doped iron oxide thin films prepared by air pneumatic spray	7
Development of a deep learning method for phase retrieval image enhancement in phase contrast microcomputed tomography	7
Flexible implementation of modulated localisation microscopy based on DMD	7
Material characteristics of historic scagliola interiors in Vienna: A view through the microscope	7
In memoriam – Hans Jørgen Gottlieb Gundersen	7
Fluorescence microscopic investigation of PCE superplasticiser adsorption in calcined clay blended cement	7
Characterisation of bond between cement paste and steel fibres with different surface roughness using SEM	7
ToTEM: A software for fast TEM image simulation	7
Morphological and structural analysis of iron‐rich porcelains excavated from the Jian kiln site of Song dynasty	7
Automatic detection of Kikuchi bands based on Radon transform and PPHT	7
Adsorption of PCE in alkali‐activated materials analysed by fluorescence microscopy	7
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TOC ‐ Issue Information	6
Corrigendum	6
Open‐source hardware‐ and software‐based cryomicroscopy system for investigation of phase transitions in cryobiological research	6
Correlation steered scanning with spiral scanning path for AFM to correct image distortion with real‐time compensation	6
Correction to ‘Non‐fitting FLIM‐FRET facilitates analysis of protein interactions in live Zebrafish embryos’	6
Quantitative analysis of human umbilical vein endothelial cell morphology and tubulogenesis	6
Microscopic investigation of the optical and morphological properties of iPP/TiO₂ nanocomposite fibres using computed tomography technique	6
TOC ‐ Issue Information	6
Correction to “Image quality evaluation for FIB‐SEM images”	6
Simple Python‐based methods for analysis and drift‐correction of STM images	6
Primed conversion: The emerging player of precise and nontoxic photoconversion	6
A perspective of fluorescence microscopy for cellular structural biology with EGFR as witness	5
Cryo‐SEM and large volume FIB‐SEM of Arabidopsis cotyledons: Degradation of lipid bodies, biogenesis of glyoxysomes and reorganisation of organelles during germination	5
Characterisation and correction of polarisation effects in fluorescently labelled fibres	5
A case study of distress mechanism(s) in a concrete structure foundation in the saturated zone and above the saturated zone	5

Kikuchi pattern simulations of backscattered and transmitted electrons	5
A Python tool to determine the thickness of the hydrate layer around clinker grains using SEM‐BSE images	5
TOC ‐ Issue Information	5
Comparison of holotomographic microscopy and coherence‐controlled holographic microscopy	5
An integrated optical waveguide micro‐cantilever system for chip‐based AFM	5
An automated slide scanning system for membrane filter imaging in diagnosis of urogenital schistosomiasis	5
TOC ‐ Issue Information	5
Unveiling the limits of precision in iterative MINFLUX	5
TUNA‐EBSD‐CL correlative multi‐microscopy study, on the example of Cu(In,Ga)S₂ solar cell absorber	5
Non‐fitting FLIM‐FRET facilitates analysis of protein interactions in live zebrafish embryos	5
Detecting charge transfer at defects in 2D materials with electron ptychography	5
Comparative study on the Ru ware, Ru‐type ware of Qingliangsi kiln and celadon of Zhanggongxiang kiln	4
Semi‐automatic stitching of filamentous structures in image stacks from serial‐section electron tomography	4
TOC ‐ Issue Information	4
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The effect of the combined addition of copper, lithium and sulphur on the formation of Portland cement clinker	4
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PUMA – An open‐source 3D‐printed direct vision microscope with augmented reality and spatial light modulator functions	4
Made to measure: An introduction to quantifying microscopy data in the life sciences	4
Diagnostic electron microscopy in human infectious diseases – Methods and applications	4
Handheld cross‐polarised microscope for imaging individual pigmented cells in human skin in vivo	4
Comparison of microstructural imaging of the root canal isthmus using propagation‐based X‐ray phase‐contrast and absorption micro‐computed tomography	4
TOC ‐ Issue Information	4
Implications of gnomonic distortion on electron backscatter diffraction and transmission Kikuchi diffraction	4
The Journal of Microscopy would like to thank all those referees who reviewed papers for the Journal during 2021. Your assistance and contribution to the Journal is greatly apprec	4
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Staying on track – Keeping things running in a high‐end scientific imaging core facility	4
Automated particle recognition for engine soot nanoparticles	3
Influence of alumina ratio on reactions at the surface of alite crystals during cooling	3
Quantification of surface grinding during the sample preparation of cementitious materials by optical profilometry	3
TOC ‐ Issue Information	3
Estimating microstructural feature distributions from image data using a Bayesian framework	3
Setting up an institutional OMERO environment for bioimage data: Perspectives from both facility staff and users	3
TOC ‐ Issue Information	3
Improving light microscopy training routines with evidence‐based education	3
Quantifying superimposed protein flow dynamics in live cells using spatial filtering and spatiotemporal image correlation spectroscopy	3
Trainable segmentation for transmission electron microscope images of inorganic nanoparticles	3
Image quality evaluation for FIB‐SEM images	3
Diversity under the microscope: Lessons for building belonging in interdisciplinary spaces from the Women in Imaging + Industry bootcamp	3
The incorporation of Cu into the clinker phases	3
Comparison of the SMLM technique and the MSSR algorithm in confocal microscopy for super‐resolved imaging of cellulose fibres	3
Introduction to Festschrift for Professor Tony Wilson	3
Preface to EMABM (Euroseminar on Microscopy Applied to Building Materials) 2022	3
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TOC ‐ Issue Information	3
Data analysis in imaging (DAIM) – A new RMS science section	3
The structure of the eggshell and eggshell membranes of Crocodylus niloticus	3
Comparison of the effects of AgNPs on the morphological and mechanical characteristics of cancerous cells	3
PerfectlyAverage: A classical open‐source software method to determine the optimal averaging parameters in laser scanning fluorescence microscopy	3
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Quantifying phase magnitudes of open‐source focused‐probe 4D‐STEM ptychography reconstructions	3
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TOC ‐ Issue Information	3
Microscopical palynology: Birch woodland expansion and species hybridisation coincide with periods of climate warming during the Holocene epoch in Iceland	3
Two‐stage particle separation channel based on standing surface acoustic wave	3