OOIR: Observatory of International Research

Papers

(The TQCC of Journal of Microscopy is 3. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2022-01-01 to 2026-01-01.)

Article	Citations
Study on line‐scan profile for a trapezoid line under varying sample temperatures through Monte–Carlo simulation	36
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Leveraging modified ex situ tomography data for segmentation of in situ synchrotron X‐ray computed tomography	20
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Seeing clearly – Plant anatomy through Katherine Esau's microscopy lens	19
Pairwise interaction Markov model for 3D epidermal nerve fibre endings	19
A method for crystallographic mapping of an alpha‐beta titanium alloy with nanometre resolution using scanning precession electron diffraction and open‐source software libraries	19
Innovating in a bioimaging core through instrument development	18
Self‐pressurised rapid freezing at arbitrary cryoprotectant concentrations	18
A practical guide to bioimaging research data management in core facilities	18
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High‐speed 4‐dimensional scanning transmission electron microscopy using compressive sensing techniques	16
Quantification of cell shape, intracellular flows and transport based on DIC object detection and tracking	14
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Seven‐layer analysis model of an optical waveguide excitation fluorescence microscopy	14
Analogue optical pattern recognition for cross‐correlational CNN	14
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Integrated opto‐mechanical cantilever sensor with a rib waveguide	13
Application of STEM tomography to investigate smooth ER morphology under stress conditions	13
A method for extraction of exosomes from breast tumour cells and characterisation by transmission electron microscopy	13
High‐pressure freezing of mechanically stretched cells	13
Stability of electron ptychography at low electron dose	12
Towards affordable biomedical imaging: Recent advances in low‐cost, high‐resolution optoacoustic microscopy	12

In‐depth polarisation resolved SHG microscopy in biological tissues using iterative wavefront optimisation	12
Poly‐L‐lysine/hyaluronan nanocarriers as a novel nanosystem for gene delivery	12
Multi‐foci parallelised RESOLFT nanoscopy in an extended field‐of‐view	12
Virtual dissection of Aedes aegypti mosquito using phase‐contrast synchrotron microtomography	12
High‐accuracy, direct aberration determination using self‐attention‐armed deep convolutional neural networks	12
Simple automation of SEM‐EDS spectral maps analysis with Python and the edxia framework	11
ApoNecV: A macro for cell death type differentiation	11
Application of Noise2Inverse and adaptation (Noise2Phase) to single‐mask x‐ray phase contrast micro‐computed tomography	11
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Repair effect of Centella asiatica (L.) extract on damaged HaCaT cells studied by atomic force microscopy	10
Subcellular localisation and identification of single atoms using quantitative scanning transmission electron microscopy	10
Subsurface phase imaging of tapping‐mode atomic force microscopy at phase resonance	10
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Use of Melinex film for flat embedding tissue sections in LR White	9
Using the traditional microscope for mineral grain orientation determination: A prototype image analysis pipeline for optic‐axis mapping (POAM)	9
Investigation of the interface of fungal mycelium composite building materials by means of low‐vacuum scanning electron microscopy	9
Microscopy at a glance: New poster article series exploring the intersection of art, science and imaging	9
Characterisation of bond between cement paste and steel fibres with different surface roughness using SEM	9
Ptychography: A brief introduction	9
Challenges and advances in optical 3D mesoscale imaging	9
Automated Euler number of the alveolar capillary network based on deep learning segmentation with verification by stereological methods	8
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Single‐shot differential phase contrast microscopy using ring‐shaped polarisation multiplexing illumination	8
Traction force generation in Plasmodium sporozoites is modulated by a surface adhesin	8
Development of a deep learning method for phase retrieval image enhancement in phase contrast microcomputed tomography	8
CellPhePy: A python implementation of the CellPhe toolkit for automated cell phenotyping from microscopy time‐lapse videos	8
Surpassing light inhomogeneities in structured‐illumination microscopy with FlexSIM	8
Multicamera simultaneous total internal reflection and interference reflection microscopy	8
Material characteristics of historic scagliola interiors in Vienna: A view through the microscope	7
ToTEM: A software for fast TEM image simulation	7
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Morphological and structural analysis of iron‐rich porcelains excavated from the Jian kiln site of Song dynasty	7
Multiscale characterisation of cellulose nanofibril networks using three 3D imaging methods	7
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Correction to ‘Non‐fitting FLIM‐FRET facilitates analysis of protein interactions in live Zebrafish embryos’	7
Fluorescence microscopic investigation of PCE superplasticiser adsorption in calcined clay blended cement	7
Flexible implementation of modulated localisation microscopy based on DMD	7
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Microtexture analysis of copper‐doped iron oxide thin films prepared by air pneumatic spray	7
Simple Python‐based methods for analysis and drift‐correction of STM images	6
Response to Adler and Parmryd	6
Introduction to the Festschrift for Paul Walther	6
Microscopic investigation of the optical and morphological properties of iPP/TiO₂ nanocomposite fibres using computed tomography technique	6
Correction to “Image quality evaluation for FIB‐SEM images”	6
Open‐source hardware‐ and software‐based cryomicroscopy system for investigation of phase transitions in cryobiological research	6
A Python tool to determine the thickness of the hydrate layer around clinker grains using SEM‐BSE images	6
Correlation steered scanning with spiral scanning path for AFM to correct image distortion with real‐time compensation	6
Unveiling the limits of precision in iterative MINFLUX	6
A perspective of fluorescence microscopy for cellular structural biology with EGFR as witness	6

Primed conversion: The emerging player of precise and nontoxic photoconversion	6
Automatic identification and quantification of surface nanoscale pore morphology in coals of different ranks based on AFM, SEM and LP‐N ₂ GA	6
Quantitative analysis of human umbilical vein endothelial cell morphology and tubulogenesis	5
Contrast by electron microscopy in thick biological specimens	5
Non‐fitting FLIM‐FRET facilitates analysis of protein interactions in live zebrafish embryos	5
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Determining bismuth content in GaAsBi alloys by energy‐dispersive X‐ray spectroscopy: A case study with multiple sets of k *‐factors for analytical trans	5
TUNA‐EBSD‐CL correlative multi‐microscopy study, on the example of Cu(In,Ga)S₂ solar cell absorber	5
Comparison of holotomographic microscopy and coherence‐controlled holographic microscopy	5
Characterisation and correction of polarisation effects in fluorescently labelled fibres	5
Detecting charge transfer at defects in 2D materials with electron ptychography	5
Cryo‐SEM and large volume FIB‐SEM of Arabidopsis cotyledons: Degradation of lipid bodies, biogenesis of glyoxysomes and reorganisation of organelles during germination	5
An automated slide scanning system for membrane filter imaging in diagnosis of urogenital schistosomiasis	5
Correlation of near‐field optical microscopy and tip‐assisted photoluminescence	4
The effect of the combined addition of copper, lithium and sulphur on the formation of Portland cement clinker	4
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Implications of gnomonic distortion on electron backscatter diffraction and transmission Kikuchi diffraction	4
Quantifying phase magnitudes of open‐source focused‐probe 4D‐STEM ptychography reconstructions	4
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A fluorescence lifetime separation approach for FLIM live‐cell imaging	4
Comparative study on the Ru ware, Ru‐type ware of Qingliangsi kiln and celadon of Zhanggongxiang kiln	4
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Staying on track – Keeping things running in a high‐end scientific imaging core facility	4
Comparison of the SMLM technique and the MSSR algorithm in confocal microscopy for super‐resolved imaging of cellulose fibres	4
Diversity under the microscope: Lessons for building belonging in interdisciplinary spaces from the Women in Imaging + Industry bootcamp	4
Handheld cross‐polarised microscope for imaging individual pigmented cells in human skin in vivo	4
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Made to measure: An introduction to quantifying microscopy data in the life sciences	4
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Diagnostic electron microscopy in human infectious diseases – Methods and applications	4
Quantification of surface grinding during the sample preparation of cementitious materials by optical profilometry	4
Automated particle recognition for engine soot nanoparticles	4
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Two‐stage particle separation channel based on standing surface acoustic wave	3
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Data analysis in imaging (DAIM) – A new RMS science section	3
Preface to EMABM (Euroseminar on Microscopy Applied to Building Materials) 2022	3
Image quality evaluation for FIB‐SEM images	3
PerfectlyAverage: A classical open‐source software method to determine the optimal averaging parameters in laser scanning fluorescence microscopy	3
Microstructural characterisation of polycrystalline ice with an etch‐pitting replication method	3
Quantifying superimposed protein flow dynamics in live cells using spatial filtering and spatiotemporal image correlation spectroscopy	3
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Trainable segmentation for transmission electron microscope images of inorganic nanoparticles	3
Microscopical palynology: Birch woodland expansion and species hybridisation coincide with periods of climate warming during the Holocene epoch in Iceland	3
A novel experimental platform to monitor solid/water interfaces under freeze–thaw cycles	3
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Fast Gaussian fitting peak extraction for confocal microscopy	3
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Integrated approaches for multiscale mitochondrial structure and function analysis	3
The structure of the eggshell and eggshell membranes of Crocodylus niloticus	3
Fourier ptychography microscopy for digital pathology	3
Revisiting PSF models: Unifying framework and high‐performance implementation	3
Improving Cavalieri volume estimation based on non‐equidistant planar sections: The trapezoidal estimator	3
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Setting up an institutional OMERO environment for bioimage data: Perspectives from both facility staff and users	3
Improving light microscopy training routines with evidence‐based education	3
Optimisation of freeze substitution protocols for the examination of malaria parasite structure by volumetric electron microscopy	3
Introduction to Festschrift for Professor Tony Wilson	3
From cells to pixels: A decision tree for designing bioimage analysis pipelines	3
Ptychographic analysis of human bone marrow‐derived mesenchymal stem cell morphology: The impact of cell senescence	3
Estimating microstructural feature distributions from image data using a Bayesian framework	3
Comparison of the effects of AgNPs on the morphological and mechanical characteristics of cancerous cells	3
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