Journal of Theoretical Biology

Article	Citations
Estimating the reproductive number R0 of SARS-CoV-2 in the United States and eight European countries and implications for vaccination	104
Predicting the second wave of COVID-19 in Washtenaw County, MI	60
Predicting the number of reported and unreported cases for the COVID-19 epidemics in China, South Korea, Italy, France, Germany and United Kingdom	58
Optimal strategies for social distancing and testing to control COVID-19	54
Individual variation in susceptibility or exposure to SARS-CoV-2 lowers the herd immunity threshold	45
Mechanistic modelling of the large-scale Lassa fever epidemics in Nigeria from 2016 to 2019	45
Optimal strategies for vaccination and social distancing in a game-theoretic epidemiologic model	44
Parameter identifiability and model selection for sigmoid population growth models	39
A novel COVID-19 epidemiological model with explicit susceptible and asymptomatic isolation compartments reveals unexpected consequences of timing social distancing	39
Impact of media reports on the early spread of COVID-19 epidemic	38
How range residency and long-range perception change encounter rates	37
Impact of intervention on the spread of COVID-19 in India: A model based study	34
Joint impacts of media, vaccination and treatment on an epidemic Filippov model with application to COVID-19	34
COVID-19 endgame: From pandemic to endemic? Vaccination, reopening and evolution in low- and high-vaccinated populations	33
Modeling of the early stage of atherosclerosis with emphasis on the regulation of the endothelial permeability	33
Effects of latency and age structure on the dynamics and containment of COVID-19	30
Network models to evaluate vaccine strategies towards herd immunity in COVID-19	28
A behavioural modelling approach to assess the impact of COVID-19 vaccine hesitancy	27
Dynamics of a stage-structured predator-prey model: cost and benefit of fear-induced group defense	26
Modelling the effects of the contaminated environments on tuberculosis in Jiangsu, China	26
A multi-strain epidemic model for COVID-19 with infected and asymptomatic cases: Application to French data	26
Modeling the waning and boosting of immunity from infection or vaccination	25
How best can finite-time social distancing reduce epidemic final size?	25
Governance of risky public goods under graduated punishment	24
Model-based data analysis of tissue growth in thin 3D printed scaffolds	24

Predicting protein-peptide binding sites with a deep convolutional neural network	23
Rolling-circle and strand-displacement mechanisms for non-enzymatic RNA replication at the time of the origin of life	23
An ecological framework for the analysis of prebiotic chemical reaction networks	23
Rapid, large-scale, and effective detection of COVID-19 via non-adaptive testing	23
Photoinhibition in optically thick samples: Effects of light attenuation on chlorophyll fluorescence-based parameters	22
Human choice to self-isolate in the face of the COVID-19 pandemic: A game dynamic modelling approach	22
Designing combination therapies using multiple optimal controls	21
Modelling COVID-19 dynamics and potential for herd immunity by vaccination in Austria, Luxembourg and Sweden	21
The total path length hydraulic resistance according to known anatomical patterns: What is the shape of the root-to-leaf tension gradient along the plant longitudinal axis?	21
Matrix adhesion and remodeling diversifies modes of cancer invasion across spatial scales	20
Eco-evolutionary dynamics of cooperation in the presence of policing	20
Computational predictive approaches for interaction and structure of aptamers	19
Pattern formation in a coupled membrane-bulk reaction-diffusion model for intracellular polarization and oscillations	19
Mathematical investigation of innate immune responses to lung cancer: The role of macrophages with mixed phenotypes	19
Optimal control of pattern formations for an SIR reaction–diffusion epidemic model	19
True epidemic growth construction through harmonic analysis	18
Cost-efficiency analysis of voluntary vaccination against n-serovar diseases using antibody-dependent enhancement: A game approach	18
Systems biology of ferroptosis: A modeling approach	18
Modelling within-host macrophage dynamics in influenza virus infection	17
Determinants of optimal insecticide resistance management strategies	17
Regulatory dynamic enzyme-cost flux balance analysis: A unifying framework for constraint-based modeling	16
A game-theoretical analysis of poliomyelitis vaccination	16
Symbiotic behaviour in the public goods game with altruistic punishment	16
Modelling strategies to organize healthcare workforce during pandemics: Application to COVID-19	16
Physically-plausible modelling of biomolecular systems: A simplified, energy-based model of the mitochondrial electron transport chain	16
A virtual host model of Mycobacterium tuberculosis infection identifies early immune events as predictive of infection outcomes	16
When to lift the lockdown in Hubei province during COVID-19 epidemic? An insight from a patch model and multiple source data	15
Dynamics of social interactions, in the flow of information and disease spreading in social insects colonies: Effects of environmental events and spatial heterogeneity	15
Estimating local outbreak risks and the effects of non-pharmaceutical interventions in age-structured populations: SARS-CoV-2 as a case study	15
Heterogeneity in susceptibility dictates the order of epidemic models	14
Mathematical modeling of atherogenesis: Atheroprotective role of HDL	14
Modelling female physiology from head to Toe: Impact of sex hormones, menstrual cycle, and pregnancy	14
A practical guide to pseudo-marginal methods for computational inference in systems biology	14
An RNA-based theory of natural universal computation	14
Structure-function relationships in the feto-placental circulation from in silico interpretation of micro-CT vascular structures	14
Transmission dynamics of COVID-19 in Nepal: Mathematical model uncovering effective controls	14
Control of tumor growth distributions through kinetic methods	14
A type IV functional response with different shapes in a predator–prey model	14
Dynamics of kinesin motor proteins under longitudinal and sideways loads	13
A mathematical model to study the impact of intra-tumour heterogeneity on anti-tumour CD8+ T cell immune response	13
Differential impacts of contact tracing and lockdowns on outbreak size in COVID-19 model applied to China	13
Statistical approach for parameter identification by Turing patterns	13
Evolution of conditional and unconditional commitment	13
A model for establishment, maintenance and reactivation of the immune response after vaccination against Ebola virus	13
The effect of viral plasticity on the persistence of host-virus systems	13
Design of an engineered ACE2 as a novel therapeutics against COVID-19	12
Multi-method global sensitivity analysis of mathematical models	12
The probability distribution of the ancestral population size conditioned on the reconstructed phylogenetic tree with occurrence data	12
Distinguishing viruses responsible for influenza-like illness	12
Ascertainment rate of SARS-CoV-2 infections from healthcare and community testing in the UK	12

Modeling the outbreak and control of African swine fever virus in large-scale pig farms	12
Free ticket, discount ticket or intermediate of the best of two worlds – Which subsidy policy is socially optimal to suppress the disease spreading?	12
A simple correction for COVID-19 sampling bias	12
Periodic orbit can be evolutionarily stable: Case Study of discrete replicator dynamics	12
Ecological and evolutionary consequences of predator-prey role reversal: Allee effect and catastrophic predator extinction	12
Role of vascular smooth muscle cell phenotypic switching in plaque progression: A hybrid modeling study	11
Inference on the structure of gene regulatory networks	11
Dynamics of sensory integration of olfactory and mechanical stimuli within the response patterns of moth antennal lobe neurons	11
The components of directional and disruptive selection in heterogeneous group-structured populations	11
Co-adaptive behavior of interacting populations in a habitat selection game significantly impacts ecosystem functions	11
Internal phosphorus recycling promotes rich and complex dynamics in an algae-phosphorus model: Implications for eutrophication management	11
An extended stochastic Allee model with harvesting and the risk of extinction of the herring population	11
An ensemble mixed effects model of sleep loss and performance	11
Emergence of ribozyme and tRNA-like structures from mineral-rich muddy pools on prebiotic earth	10
Modelling of energy-driven switch for glucagon and insulin secretion	10
A general mathematical framework for understanding the behavior of heterogeneous stem cell regeneration	10
Modelling cell guidance and curvature control in evolving biological tissues	10
Enhanced species coexistence in Lotka-Volterra competition models due to nonlocal interactions	10
Linking the disease transmission to information dissemination dynamics: An insight from a multi-scale model study	10
Analysis of individual strategies for artificial and natural immunity with imperfectness and durability of protection	10
Dominance, sharing, and assessment in an iterated Hawk–Dove game	10
A white noise approach to evolutionary ecology	10
Evolution of state-dependent strategies in stochastic games	10
Rules of nature’s Formula Run: Muscle mechanics during late stance is the key to explaining maximum running speed	10
Towards the virtual tumor for optimizing radiotherapy treatments of hypoxic tumors: A novel model of heterogeneous tissue vasculature and oxygenation	10
Cancer-induced immunosuppression can enable effectiveness of immunotherapy through bistability generation: A mathematical and computational examination	10
Competition delays multi-drug resistance evolution during combination therapy	10
Dual mechanisms of Ca2+ oscillations in hepatocytes	10
Hypnozoite dynamics for Plasmodium vivax malaria: The epidemiological effects of radical cure	10
Individual specialization and generalization in predator-prey dynamics: The determinant role of predation efficiency and prey reproductive rates	10
A direct comparison of methods for assessing the threat from emerging infectious diseases in seasonally varying environments	9
The study of myocardial ischemia-reperfusion treatment through computational modelling	9
Best response dynamics improve sustainability and equity outcomes in common-pool resources problems, compared to imitation dynamics	9
Eco-evolutionary cyclic dominance among predators, prey, and parasites	9
A Monte Carlo method to estimate cell population heterogeneity from cell snapshot data	9
A novel 3D atomistic-continuum cancer invasion model: In silico simulations of an in vitro organotypic invasion assay	9
The ecology of cancer differentiation therapy	9
Temporal signaling, population control, and information processing through chromatin-mediated gene regulation	9
Mathematical modelling of the hematopoietic stem cell-niche system: Clonal dominance based on stem cell fitness.	9
Habitual sleep duration affects recovery from acute sleep deprivation: A modeling study	9
Population dynamic regulators in an empirical predator-prey system	9
Projecting COVID-19 cases and hospital burden in Ohio	9
Phenotype- and patient-specific modelling in asthma: Bronchial thermoplasty and uncertainty quantification	9
The Singaporean model in public goods dilemmas with benevolent leaders and bribery	9
Mathematical modeling of tumor-immune system interactions: the effect of rituximab on breast cancer immune response	9
The Moon illusion explained by the projective consciousness model	9
A model of COVID-19 propagation based on a gamma subordinated negative binomial branching process	9
Autoimmune diseases initiated by pathogen infection: Mathematical modeling	9
When optimal foragers meet in a game theoretical conflict: A model of kleptoparasitism	9
A two-sex model of human papillomavirus infection: Vaccination strategies and a case study	8
Mathematical modelling of SARS-CoV-2 infection of human and animal host cells reveals differences in the infection rates and delays in viral particle production by infected cells	8
OSIRIS: A model for integrating the effects of multiple stressors on marine ecosystems	8
Projecting the COVID-19 immune landscape in Japan in the presence of waning immunity and booster vaccination	8
A theoretical analysis of the scale separation in a model to predict solid tumour growth	8
Hamilton’s rule, gradual evolution, and the optimal (feedback) control of phenotypically plastic traits	8
The effectiveness of various control strategies: An insight from a comparison modelling study	8
Spatiotemporal pattern recognition and dynamical analysis of COVID-19 in Shanghai, China	8
Are host control strategies effective to eradicate tick-borne diseases (TBD)?	8
A unified mathematical model of thyroid hormone regulation and implication for personalized treatment of thyroid disorders	8
Using statistical methods to model the fine-tuning of molecular machines and systems	8
Spatio-temporal modelling of phenotypic heterogeneity in tumour tissues and its impact on radiotherapy treatment	8
Multiple cohort study of hospitalized SARS-CoV-2 in-host infection dynamics: Parameter estimates, identifiability, sensitivity and the eclipse phase profile	8
Competitive effects in bacterial mRNA decay	8
Identifying and characterising the impact of excitability in a mathematical model of tumour-immune interactions	8
How optimal allocation of limited testing capacity changes epidemic dynamics	8
Modeling the effect of immunotherapies on human castration-resistant prostate cancer	8
Bifurcation and sensitivity analysis reveal key drivers of multistability in a model of macrophage polarization	8
Co-inoculation with arbuscular mycorrhizal fungi differing in carbon sink strength induces a synergistic effect in plant growth	8
Density dependent Resource Budget Model for alternate bearing	8
A mechanochemical model for rho GTPase mediated cell polarization	8
Control analysis of electrical stimulation for epilepsy waveforms in a thalamocortical network	8
Signal transduction in cognitive systems: Origin and dynamics of the inverted-U/U dose-response relations	8
The heterogeneous mixing model of COVID-19 with interventions	8
Predator avoidance and foraging for food shape synchrony and response to perturbations in trophic metacommunities	8
How the resource supply distribution structures competitive communities	8
Modeling dynamics of cancer radiovirotherapy	7
Bidirectional, unlike unidirectional transport, allows transporting axonal cargos against their concentration gradient	7
Reliable and efficient parameter estimation using approximate continuum limit descriptions of stochastic models	7
From insulin to Akt: Time delays and dominant processes	7
Designing experimental conditions to use the Lotka–Volterra model to infer tumor cell line interaction types	7

A mathematical model of the multiple sclerosis plaque	7
Perivascular pumping in the mouse brain: Improved boundary conditions reconcile theory, simulation, and experiment	7
Quantifying nutrient throughput and DOM production by algae in continuous culture	7
Modeling HIV multiple infection	7
The role of RdCVFL in a mathematical model of photoreceptor interactions	7
Patterns of reported infection and reinfection of SARS-CoV-2 in England	7
Evolutionary dynamics of zero-determinant strategies in repeated multiplayer games	7
Deciphering the dynamics of lamellipodium in a fish keratocytes model	7
Preservation of the value of rice paddy fields: Investigating how to prevent farmers from abandoning the fields by means of evolutionary game theory	7
The mechanism of pulsed electric field (PEF) targeting location on the spatial conformation of pine nut peptide	7
Inflected wings in flight: Uniform flow of stresses makes strong and light wings for stable flight	7
A practical guide to mathematical methods for estimating infectious disease outbreak risks	7
Three-dimensional random walk models of individual animal movement and their application to trap counts modelling	7
The role of mound functions and local environment in the diversity of termite mound structures	7
The role of syncytia during viral infections	7
Imaging the living brain: An argument for ruthless reductionism from olfactory neurobiology	7
Mathematical modeling of ventilator-induced lung inflammation	7
A modeling platform for the lymphatic system	7
A broader context for understanding amino acid alphabet optimality	7
Low leg compliance permits grounded running at speeds where the inverted pendulum model gets airborne	7
Modeling continuous glucose monitoring with fractional differential equations subject to shocks	7
Robust banded protoxylem pattern formation through microtubule-based directional ROP diffusion restriction	7
The Role of Biofilms, Bacterial Phenotypes, and Innate Immune Response in Mycobacterium avium Colonization to Infection	7
A multiscale multicellular spatiotemporal model of local influenza infection and immune response	7
Conditions under which distributions of edge length ratios on phylogenetic trees can be used to order evolutionary events	7
The lodging of crops by tornadoes	7
Chaos in memory function of sleep: A nonlinear dynamical analysis in thalamocortical study	7
Modelling fungal hypha tip growth via viscous sheet approximation	7
Effective nonlocal kernels on reaction–diffusion networks	7
Optimal heat transport induced by magnetic nanoparticle delivery in vascularised tumours	7
Anticipating future learning affects current control decisions: A comparison between passive and active adaptive management in an epidemiological setting	7
The role of alcohol consumption on acetaminophen induced liver injury: Implications from a mathematical model	7
Delay-driven oscillations via Axin2 feedback in the Wnt/β-catenin signalling	7
Stochastic modelling of collective motor protein transport through a crossing of microtubules	6
Modelling somatic mutation accumulation and expansion in a long-lived tree with hierarchical modular architecture	6
A DNA-structured mathematical model of cell-cycle progression in cyclic hypoxia	6
Reducing courtship time promotes marital bliss: The Battle of the Sexes game revisited with costs measured as time lost	6
Aging-induced fragility of the immune system	6
Beyond the limits of circadian entrainment: Non-24-h sleep-wake disorder, shift work, and social jet lag	6
Pandemic modelling for regions implementing an elimination strategy	6
Mathematical modelling to assess the feasibility of Wolbachia in malaria vector biocontrol	6
Study of dose-dependent combination immunotherapy using engineered T cells and IL-2 in cervical cancer	6
Effect of feedback regulation on stem cell fractions in tissues and tumors: Understanding chemoresistance in cancer	6
Memory-driven movement model for periodic migrations	6
Cost analysis of vaccination in tick-mouse transmission of Lyme disease	6
The role of advanced and late provisions in a co-evolutionary epidemic game model for assessing the social triple-dilemma aspect	6
Modeling the synergistic properties of drugs in hormonal treatment for prostate cancer	6
Identifiability and inference of phylogenetic birth–death models	6
Modeling the subjective perspective of consciousness and its role in the control of behaviours	6
On the Fourier transform of a quantitative trait: Implications for compressive sensing	6
Genetic polymorphism under cyclical selection in long-lived species: The complex effect of age structure and maternal selection	6
A computational model of cell membrane bioelectric polarization and depolarization, connected with cell proliferation, in different tissue geometries	6
Uncovering potential interventions for pancreatic cancer patients via mathematical modeling	6
On deriving Murray’s law from constrained minimization of flow resistance	6
Rule-based epidemic models	6
The adaptive value of tandem communication in ants: Insights from an agent-based model	6
Schooling in habitats with aggregative sites: The case of tropical tuna and floating objects	6
Animal intermittent locomotion: A null model for the probability of moving forward in bounded space	6
A dynamic model for spread of livestock-associated methicillin-resistant Staphylococcus aureus on a pig farm, incorporating bacterial load and human exposure through air	6
Fluid dynamic simulation suggests hopping locomotion in the Ordovician trilobite Placoparia	6
A quantitative method to project the probability of the end of an epidemic: Application to the COVID-19 outbreak in Wuhan, 2020	6
Mathematical modelling of autoimmune myocarditis and the effects of immune checkpoint inhibitors	6
Sterile males and females can synergistically suppress wild pests targeted by sterile insect technique	6
Fitness dependence preserves selection for recombination across diverse mixed mating strategies	6
The non-pharmaceutical interventions may affect the advantage in transmission of mutated variants during epidemics: A conceptual model for COVID-19	6
Optimal pollen stickiness to pollinators for maximizing paternal fitness: Increased number of recipient flowers or increased pollen deposition on recipient flowers?	6
A novel nonlocal partial differential equation model of endothelial progenitor cell cluster formation during the early stages of vasculogenesis	6
Cerebrospinal fluid flow driven by arterial pulsations in axisymmetric perivascular spaces: Analogy with Taylor’s swimming sheet	6
Disease dynamics and mean field models for clustered networks	6
Effect of the group size on the evolution of cooperation when an exit option is present	6
How temporal environmental stochasticity affects species richness: Destabilization, neutralization and the storage effect	6
Temperature robustness in Arabidopsis circadian clock models is facilitated by repressive interactions, autoregulation, and three-node feedbacks	6
Hormonal regulation of ovarian follicle growth in humans: Model-based exploration of cycle variability and parameter sensitivities	6
Bovine mastitis and optimal disease management: Dynamic programming analysis	6
A spatio-stochastic model for the spread of infectious diseases	6
Maintenance of high inbreeding depression in selfing populations: Two-stage effect of early- and late-acting mutations	6
Modeling identifies variability in SARS-CoV-2 uptake and eclipse phase by infected cells as principal drivers of extreme variability in nasal viral load in the 48 h post infection	6
Modelling cancer cell budding in-vitro as a self-organised, non-equilibrium growth process	6
A multi-strain model with asymptomatic transmission: Application to COVID-19 in the US	5
A multiple fascicle muscle force model of the human triceps surae	5
A hybrid discrete-continuum model of immune responses to SARS-CoV-2 infection in the lung alveolar region, with a focus on interferon induced innate response	5
Resource allocation in tragedy of the commons game in plants for belowground competition	5
Assessing the impact of insecticide-treated nets in the face of insecticide resistance on malaria control	5
A phenomenological-based semi-physical model of the kidneys and its role in glucose metabolism	5
Conditions for the existence of zero-determinant strategies under observation errors in repeated games	5
Propagation of invasive plant species in the presence of a road	5
Aging a little: On the optimality of limited senescence in Escherichia coli	5
Effects of migration network configuration and migration synchrony on infection prevalence in geese	5
Parasite evolution in an age-structured population	5
First passage time properties of miRNA-mediated protein translation	5
Mathematical modeling of cerebral capillary blood flow heterogeneity and its effect on brain tissue oxygen levels	5
A simple stochastic model describing genomic evolution over time of GC content in microbial symbionts	5
Homo-Oligomerisation in Signal Transduction: Dynamics, Homeostasis, Ultrasensitivity, Bistability	5
Lockhart with a twist: Modelling cellulose microfibril deposition and reorientation reveals twisting plant cell growth mechanisms	5
Coexistence of Hopf-born rotation and heteroclinic cycling in a time-delayed three-gene auto-regulated and mutually-repressed core genetic regulation network	5