Plant Physiology

Papers
(The TQCC of Plant Physiology is 14. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-04-01 to 2025-04-01.)
ArticleCitations
MYB30-INTERACTING E3 LIGASE 1 regulates LONELY GUY 5-mediated cytokinin metabolism to promote drought tolerance in cotton248
Epigenetic memory of temperature sensed during somatic embryo maturation in 2-yr-old maritime pine trees154
Protoplast transient transformation facilitates subcellular localization and functional analysis of walnut proteins115
EARLY FLOWERING 3 alleles affect the temperature responsiveness of the circadian clock in Chinese cabbage111
Transcription factor OsMYB2 triggers amino acid transporter OsANT1 expression to regulate rice growth and salt tolerance103
RESPIRATORY BURST OXIDASE HOMOLOG 5.1 regulates H3K4me3 deposition and transcription after cold priming in cucumber96
All members of the Arabidopsis DGAT and PDAT acyltransferase families operate during high and low temperatures94
Caffeic acid O-methyltransferase-dependent flavonoid defenses promote sorghum resistance to fall armyworm infestation90
A new starch: Dynamics of Arabidopsis starch metabolism are influenced by the oligosaccharide pool77
Antimycin A induces light hypersensitivity of PSII in the presence of quinone QB-site binding herbicides73
Proton and calcium pumping P-type ATPases and their regulation of plant responses to the environment73
MITOGEN-ACTIVATED PROTEIN KINASE3 enhances disease resistance of edr1 mutants by phosphorylating MAPKKK571
Multi-omics approach highlights new targets for amino acid composition change in maize kernels71
A leucine-rich-repeat receptor-like kinase regulates pollen aperture formation in rice68
PTOX-dependent safety valve does not oxidize P700 during photosynthetic induction in the Arabidopsis pgr5 mutant67
Correction to: Rice co-expression network analysis identifies gene modules associated with agronomic traits66
Correction to: p-Coumaroylation of lignin occurs outside of commelinid monocots in the eudicot genus Morus (mulberry)66
How plants adapt to combined and sequential abiotic stresses: A transcriptomics approach63
Erratum to: Functional redox links between lumen thiol oxidoreductase1 and serine/threonine-protein kinase STN763
Partners in crime: MicroRNA408 and peptide miPEP408 negatively regulate arsenic and low sulfur tolerance62
Woolly mutation with the Get02 locus overcomes the polygenic nature of trichome-based pest resistance in tomato61
Is hypoxia good or bad? Role of oxygen levels in maize kernel development61
Online data resource for exploring transposon insertion polymorphisms in public soybean germplasm accessions60
A point mutation in the gene encoding magnesium chelatase I subunit influences strawberry leaf color and metabolism59
Extrachromosomal circular DNA as a vehicle to gene transfer in plants56
Inoculation of tomato with a plant growth-promoting rhizobacteria enhances basal and wound-induced ROS levels56
Symbiosis between Dendrobium catenatum protocorms and Serendipita indica involves the plant hypoxia response pathway56
Phenylalanine metabolism-dependent lignification confers rhizobacterium-induced plant resistance55
Correction to: A sucrose-binding protein and β-conglycinins regulate soybean seed protein content and control multiple seed traits55
Mixed-planting: A useful tool to build climate-resilient forests55
BRASSINAZOLE RESISTANT 1 delays photoperiodic flowering by repressing CONSTANS transcription54
Correction to: The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato53
ATP-CITRATE LYASEB1 supplies materials for sporopollenin biosynthesis and microspore development in Arabidopsis53
ELONGATED HYPOCOTYL 5 promotes root growth by maintaining redox homeostasis and repressing oxidative stress response53
Rubisco packaging and stoichiometric composition of the native β-carboxysome in Synechococcus elongatus PCC794252
Synthetically derived BiAux modulates auxin co-receptor activity to stimulate lateral root formation51
Manganese concentration affects chloroplast structure and the photosynthetic apparatus in Marchantia polymorpha51
Photosystem I light-harvesting proteins regulate photosynthetic electron transfer and hydrogen production51
The ETHYLENE RESPONSE FACTOR6-GRETCHEN HAGEN3.5 module regulates rooting and heat tolerance in Dimocarpus longan50
Past accomplishments and future challenges of the multi-omics characterization of leaf growth50
Impact of freeze–thaw-induced pit aspiration on stem water transport in the subalpine conifer Abies veitchii50
Correction to: A Single Arabidopsis Gene Encodes Two Differentially Targeted Geranylgeranyl Diphosphate Synthase Isoforms50
Mitochondrion-encoded circular RNAs are widespread and translatable in plants50
Early seed development requires the A-type ATP-binding cassette protein ABCA1049
EXTRA LARGE G-PROTEIN2 mediates cell death and hyperimmunity in the chitin elicitor receptor kinase 1-4 mutant49
Autoactivation of mycorrhizal symbiosis signaling through gibberellin deactivation in orchid seed germination49
Ceramide and C1P: a lipid love story of Brassica-Sclerotinia interaction49
Sense or nonsense? The role of protein acetylation in cyanobacterial photosynthesis and growth49
Integrating GWAS and TWAS to elucidate the genetic architecture of maize leaf cuticular conductance49
SNARE SYP132 mediates divergent traffic of plasma membrane H+-ATPase AHA1 and antimicrobial PR1 during bacterial pathogenesis49
PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 2 localizes to the Golgi48
Ran-GTP/-GDP-dependent nuclear accumulation of NONEXPRESSOR OF PATHOGENESIS-RELATED GENES1 and TGACG-BINDING FACTOR2 controls salicylic acid-induced leaf senescence48
Rooting for order: How CIKs keep lateral growth in check48
Golgi apparatus-localized CATION CALCIUM EXCHANGER4 promotes osmotolerance of Arabidopsis47
Validating the role of glutamine synthetase GLN2 during photorespiration in Arabidopsis thaliana47
Yet another twist in lignin biosynthesis: Is there a specific alcohol dehydrogenase for H-lignin production?47
The pollen tube's secret to slick growth? A dab of pectate lyase-like enzyme47
Mycorrhizal symbiosis reprograms ion fluxes and fatty acid metabolism in wild jujube during salt stress47
A data-integrative modeling approach accurately characterizes the effects of mutations on Arabidopsis lipid metabolism46
Regulation of the interplay between reactive oxygen species and SUMOylation pathways: an essential role for SIZ146
Citronellol biosynthesis in pelargonium is a multistep pathway involving progesterone 5β-reductase and/or iridoid synthase-like enzymes46
Detection and editing of the updated Arabidopsis plastid- and mitochondrial-encoded proteomes through PeptideAtlas46
A comparative transcriptomics and eQTL approach identifiesSlWD40as a tomato fruit ripening regulator46
The role of lipid-modified proteins in cell wall synthesis and signaling45
HISTONE DEACETYLASE 15 and MOS4-associated complex subunits 3A/3B coregulate intron retention of ABA-responsive genes45
The rice transcription factor Nhd1 regulates root growth and nitrogen uptake by activating nitrogen transporters45
Arabidopsis MCTP family member QUIRKY regulates the formation of the STRUBBELIG receptor kinase complex45
Shade triggers posttranscriptional PHYTOCHROME-INTERACTING FACTOR-dependent increases in H3K4 trimethylation45
Scaling the walls: How stripe rust overcomes wheat’s defenses44
Coat protein of cassava common mosaic virus targets RAV1 and RAV2 transcription factors to subvert immunity in cassava44
A PLETHORA/PIN-FORMED/auxin network mediates prehaustorium formation in the parasitic plant Striga hermonthica44
And … cut! Identifying chromatin features affecting CRISPR–Cas9 activity in plants44
Adenylates regulate Arabidopsis plastidial thioredoxin activities through the binding of a CBS domain protein43
Spotlight on overlooked lignin monomers: Hydroxycinnamaldehydes43
GWAS identifies two important genes involved in Chinese chestnut weight and leaf length regulation43
Acyl-CoA binding protein is required for lipid droplet degradation in the diatom Phaeodactylum tricornutum43
H2 supplied via ammonia borane stimulates lateral root branching via phytomelatonin signaling43
early maturity 7 promotes early flowering by controlling the light input into the circadian clock in barley42
Oomycete pathogen pectin acetylesterase targets host lipid transfer protein to reduce salicylic acid signaling42
Integrative multiomics profiling of passion fruit reveals the genetic basis for fruit color and aroma42
Linking leaf embolism resistance with pit membrane characteristics42
Alcohol acyl transferase genes at a high-flavor intensity locus contribute to ester biosynthesis in kiwifruit42
OROSOMUCOID PROTEIN 1 regulation of sphingolipid synthesis is required for nodulation in Aeschynomene evenia42
Pentatricopeptide repeat protein MITOCHONDRIAL STABILITY FACTOR 3 ensures mitochondrial RNA stability and embryogenesis42
HI from the Sky: Estimating harvest index from UAVs combined with machine learning42
R-SNARE protein YKT61 mediates root apical meristem cell division via BRASSINOSTEROID-INSENSITIVE1 recycling41
The interplay among PbNAC71, PbWAT1, and PbRNF217 reveals the secret behind dwarf pear trees41
Formins bridle and unleash their way through cytokinesis: a phragmoplast-centered view40
A soybean non-coding RNA mining and co-expression resource based on 1,596 RNA-seq and small RNA-seq libraries40
SVALKA-POLYCOMB REPRESSIVE COMPLEX2 module controls C-REPEAT BINDING FACTOR3 induction during cold acclimation40
The impact of light and thioredoxins on the plant thiol-disulfide proteome40
Parasitic plant small RNA analyses unveil parasite-specific signatures of microRNA retention, loss, and gain39
Model-assisted ideotyping reveals trait syndromes to adapt viticulture to a drier climate39
Plant Physiology welcomes 15 new Assistant Features Editors39
The SvFUL2 transcription factor is required for inflorescence determinacy and timely flowering in Setaria viridis39
SHOOT MERISTEMLESS participates in the heterophylly of Hygrophila difformis (Acanthaceae)39
Post-Golgi trafficking of rice storage proteins requires the small GTPase Rab7 activation complex MON1–CCZ139
Generating an oilseed rape mutant with non-abscising floral organs using CRISPR/Cas9 technology39
Mechanical advantage makes stomatal opening speed a function of evaporative demand39
Fatty acid photodecarboxylase is an ancient photoenzyme that forms hydrocarbons in the thylakoids of algae39
Stress memory gene FaHSP17.8-CII controls thermotolerance via remodeling PSII and ROS signaling in tall fescue38
A common whole-genome paleotetraploidization in Cucurbitales38
DeepLearnMOR: a deep-learning framework for fluorescence image-based classification of organelle morphology38
Uncoupling differential water usage from drought resistance in a dwarf Arabidopsis mutant38
Bringing it in: a transporter of extracellular amino acids for regulation of plant immunity38
Abscisic acid modulates neighbor proximity-induced leaf hyponasty in Arabidopsis38
Botrytis cinereainfection accelerates ripening and cell wall disassembly to promote disease in tomato fruit37
The roles of epigenetic regulators in plant regeneration: Exploring patterns amidst complex conditions37
Highlights in gibberellin research: A tale of the dwarf and the slender37
Phylloquinone is the principal Mehler reaction site within photosystem I in high light37
Wildsoydb DataHub: a platform for accessing soybean multiomic datasets across multiple reference genomes37
Genome editing around the globe: An update on policies and perceptions37
Watermelon goes viral: introducing a vector for virus-induced gene silencing in cucurbits36
The unique bryophyte-specific repeat-containing protein SHORT-LEAF regulates gametophore development in moss36
Breaking the barrier: Mg hyperaccumulation in Brassica rapa endodermal mutants36
Spatiotemporal dynamics of the tomato fruit transcriptome under prolonged water stress36
Natural diversity provides a broad spectrum of cyanobacteriochrome-based diguanylate cyclases36
SeedQuant: a deep learning-based tool for assessing stimulant and inhibitor activity on root parasitic seeds36
ZAXINONE SYNTHASE 2 regulates growth and arbuscular mycorrhizal symbiosis in rice36
Actin-related protein ARP4 and ARP6 antagonistically regulate DNA demethylase ROS1 in plants35
Ribosome profiling elucidates differential gene expression in bundle sheath and mesophyll cells in maize35
Thioredoxin A regulates protein synthesis to maintain carbon and nitrogen partitioning in cyanobacteria35
Breaking the code of auxin metabolism: an additional role for DIOXYGENASE FOR AUXIN OXIDATION 135
A holistic evaluation of nitrogen responses in maize35
Identification of growth regulators using cross-species network analysis in plants35
Maize requires Embryo defective27 for embryogenesis and seedling development35
The intermediate in a nitrate-responsive ω-amidase pathway in plants may signal ammonium assimilation status35
Killing me softly: A pathogen accelerates fruit ripening and softening to cause disease35
Let the sunshine in: Abscisic acid modulates shade avoidance by inducing hyponasty movement in Arabidopsis35
Toward a data infrastructure for the Plant Cell Atlas35
Grappling with grapevine guardians: Unraveling the dynamic dance of VviWRKY10 and VviWRKY30 in powdery mildew defense35
Surviving hypoxia: aquaporin-like protein NIP2;1 mediates lactic acid transport34
Herb and conifer roots show similar high sensitivity to water deficit34
Conspicuous chloroplast with light harvesting-photosystem I/II megacomplex in marine Prorocentrum cordatum34
On the Inside34
Damage and repair: HowPoaceaeplants fix DNA damaged by UV-B radiation34
Shining light on molecular details of SPA2, a repressor of photomorphogenesis34
Abscisic acid-responsive transcription factors PavDof2/6/15 mediate fruit softening in sweet cherry34
What plants do in the shadows: Gene transcription precedes histone methylation during shade responses34
ROP GTPases with a geranylgeranylation motif modulate alkaloid biosynthesis in Catharanthus roseus34
The bare necessities of plant K+ channel regulation34
Essential amino acids in the Plant-Conserved and Class-Specific Regions of cellulose synthases34
Photosystems are ganging up to form megacomplexes in the dinoflagellateProrocentrum cordatum34
Caught with a hand in the cookie jar: Phytophthora AEP1 mediates sugar uptake but triggers plant immunity33
Correction to: Dual Regulation of the Arabidopsis High-Affinity Root Iron Uptake System by Local and Long-Distance Signals33
A regulatory network driving shoot lignification in rapidly growing bamboo33
Peroxisomal 4-coumaroyl-CoA ligases participate in shikonin production in Lithospermum erythrorhizon33
Large Vascular Bundle Phloem Area 4 enhances grain yield and quality in rice via source–sink–flow33
Transcription factors KNAT3 and KNAT4 are essential for integument and ovule formation in Arabidopsis33
Cytokinin signaling regulates two-stage inflorescence arrest in Arabidopsis33
A tale of two pumps: Blue light and abscisic acid alter Arabidopsis leaf hydraulics via bundle sheath cell H+-ATPases33
Acyl carrier protein OsMTACP2 confers rice cold tolerance at the booting stage33
Increased sedoheptulose-1,7-bisphosphatase content inSetaria viridisdoes not affect C4 photosynthesis33
Lignocellulose molecular assembly and deconstruction properties of lignin-altered rice mutants33
Membrane nanodomains and transport functions in plant33
Epigenetic nature of Arabidopsis thaliana telomeres33
A viral movement protein co-opts endoplasmic reticulum luminal-binding protein and calreticulin to promote intracellular movement32
Growth-regulating factor 15-mediated gene regulatory network enhances salt tolerance in poplar32
Advances and prospects of rhodopsin-based optogenetics in plant research32
The Ginkgo biloba microRNA160–ERF4 module participates in terpene trilactone biosynthesis32
Celebrating the American Society of Plant Biologists centennial anniversary: A compendium of review articles in plant biology32
Choose your own TALE: Two novel cell death-inducers identified by engineered effectors32
Unique opportunities for future research on the alternative oxidase of plants32
CRISPR/Cas9 mutants of tomato MICRORNA164 genes uncover their functional specialization in development32
Enhanced genome-wide association reveals the role ofYABBY11-NGATHA-LIKE1in leaf serration development ofPopulus32
MutL homolog 1 participates in interference-sensitive meiotic crossover formation in soybean31
Roles of very long-chain fatty acids in compound leaf patterning inMedicago truncatula31
A lotus by any other color: Gene regulation divergence in lotus petal development31
Worth its salt: a histone acetyltransferase gene enhances salt tolerance in bread wheat31
MORE FLORET1 controls anther development by negatively regulating key tapetal genes in both diploid and tetraploid rice31
Hypoxia in tomato (Solanum lycopersicum) fruit during ripening: Biophysical elucidation by a 3D reaction–diffusion model31
Eukaryotic translation elongation factor OseEF1A negatively regulates rice immunity against blast disease31
Transcription factor DIVARICATA1 positively modulates seed germination in response to salinity stress31
Transcription factor OsWRKY72 controls rice leaf angle by regulating LAZY1-mediated shoot gravitropism31
The MYB59 transcription factor negatively regulates salicylic acid- and jasmonic acid-mediated leaf senescence30
Natural variation of respiration-related traits in plants30
The transcription factor PbrbZIP52 positively affects pear pollen tube longevity by promoting callose synthesis30
Decoding and recoding plant development30
Sucrose-induced auxin conjugate hydrolase restores symbiosis in aMedicagocytokinin perception mutant30
Nα-acetyltransferase NAA50 mediates plant immunity independent of the Nα-acetyltransferase A complex30
Of attachment and connection: Auxin signaling in the cambium promotes successful plant grafting30
DIV1: The master of awakening seeds in harsh salinity stress30
Tissue-specific deposition, speciation and transport of antimony in rice30
The transcription factor VviNAC60 regulates senescence- and ripening-related processes in grapevine30
A genetically encoded fluorescent heme sensor detects free heme in plants29
Mind the gap: Spatiotemporal patterns of airspace formation in duckweeds are regulated by hormones29
sic-4 Reports in sick! Loss of SICKLE induces salicylic acid-dependent cell death in Arabidopsis29
Ubiquitination of PHYTOSULFOKINE RECEPTOR1 regulates plant immunity29
Tetratricopeptide-containing SMALL KERNEL 11 is essential for the assembly of cytochrome c oxidase in maize mitochondria29
Designer TALEs enable discovery of cell death-inducer genes29
Putative rhamnogalacturonan-II glycosyltransferase identified through callus gene editing which bypasses embryo lethality29
Withdrawn as duplicate: Transcription factor WOX11 regulates protein translation via ribosome protein acetylation in rice roots29
Endoplasmic reticulum protein ALTERED MERISTEM PROGRAM 1 negatively regulates senescence in Arabidopsis29
Viral synergism suppresses R gene-mediated resistance by impairing downstream defense mechanisms in soybean29
Multimodal imaging analysis in silver fir reveals coordination in cellulose and lignin deposition29
Mixing it up: a chimeric tobacco-cyanobacterial photosystem II design for maximum low-light use efficiency29
Dynamic relationships among pathways producing hydrocarbons and fatty acids of maize silk cuticular waxes29
MYB24 in control: Transcriptional activation of lignin and cellulose biosynthesis in pear fruit stone cells29
Integration of multiple stress signals in plants using synthetic Boolean logic gates29
Functional specialization of expanded orange carotenoid protein paralogs in subaerial Nostoc species28
Erratum to: Two ubiquitin-associated ER proteins interact with COPT copper transporters and modulate their accumulation28
Long-term acclimation to cadmium exposure reveals extensive phenotypic plasticity in Chlamydomonas28
The transcription factor ORA59 exhibits dual DNA binding specificity that differentially regulates ethylene- and jasmonic acid-induced genes in plant immunity28
Monitoring nutrients in plants with genetically encoded sensors: achievements and perspectives28
Bigger meristem, higher yield? The roles of REL2 and RELK in maize meristem function and yield enhancement28
Last piece of the puzzle: defining client proteins of the NFU iron-sulfur transfer proteins in mitochondria28
Recent advances in epigenetic triggering of climacteric fruit ripening28
Stairway to have N: target of Rapamycin as a gatekeeper of nitrogen metabolism in Arabidopsis28
PmAGAMOUS recruits polycomb protein PmLHP1 to regulate single-pistil morphogenesis in Japanese apricot28
Off-putting! No red, no ripe: methylglyoxal inhibits fruit ripening28
Mechanistic effects of lipid binding pockets within soluble signaling proteins: lessons from acyl-CoA-binding and START-domain-containing proteins28
Advances in seed hypoxia research28
Closing the loop: Three musketeers of autophagy-ATG2, ATG18a, and ATG928
On the Inside28
AtPGAP1 functions as a GPI inositol-deacylase required for efficient transport of GPI-anchored proteins28
Two stripe rust effectors impair wheat resistance by suppressing import of host FeS protein into chloroplasts28
Intertwined roots: linked nitrate and brassinosteroid signaling pathways modulate root system architecture28
The Tetratricopeptide repeat protein TaTPR-B1 regulates spike compactness in bread wheat28
A vector system for fast-forward studies of the HOPZ-ACTIVATED RESISTANCE1 (ZAR1) resistosome in the model plant Nicotiana benthamiana28
BRing on the fight! Brassinosteroid-related transcription factors modulate resistance to fungi attack in wheat28
The calcium-dependent protein kinase CmaCPK4 regulates sex determination in pumpkin (Cucurbita maxima D.)27
Be sweet, be strong, and be tolerant: ERDL4 regulates sugar transport and promotes cold tolerance in Arabidopsis27
Aromatic amino acid biosynthesis impacts root hair development and symbiotic associations inLotus japonicus27
2′,3′-cAMP treatment mimics the stress molecular response inArabidopsis thaliana27
m6A and m5C modifications as the gears: CmoCK1 mRNA travels to promote chilling tolerance27
Low temperature-induced regulatory network rewiring via WRKY regulators during banana peel browning27
A 2-oxoglutarate-dependent dioxygenase converts dihydrofuran to furan in Salvia diterpenoids27
Dephosphorylate to close: type 2C protein phosphatases regulate stomatal aperture27
Loss of a pyridoxal-phosphate phosphatase rescues Arabidopsis lacking an endoplasmic reticulum ATP carrier27
Primed to persevere: Hypoxia regulation from epigenome to protein accumulation in plants27
Interfered chromosome pairing at high temperature promotes meiotic instability in autotetraploid Arabidopsis27
Tools to understand hypoxia responses in plant tissues27
Alternative oxidase (AOX) 1a and 1d limit proline-induced oxidative stress and aid salinity recovery in Arabidopsis27
Packaging “vegetable oils”: Insights into plant lipid droplet proteins27
Autophagy in maternal tissues contributes to Arabidopsis seed development27
Stress-induced tRNA fragments take action in alternative splicing in Arabidopsis27
Go with the flux: Modeling accurately predicts phenotypes of Arabidopsis lipid mutants27
Mutation of GLR2 confers enhanced glufosinate resistance and salt tolerance in rice27
Breaking bud: a gentian FLOWERING LOCUS T controls budbreak and dormancy27
Unraveling the role of DNA G-quadruplexes in transcription in the rice27
Corrigendum to: Enriched HeK4me3 marks at Pm-0 resistance-related genes prime courgette against Podosphaera xanthii27
Demographic history and distinct selection signatures of two domestication genes in mungbean27
Can biochemical traits bridge the gap between genomics and plant performance? A study in rice under drought27
CAST-R: An application to visualize circadian and heat stress-responsive genes in plants27
Roles of three cytochrome P450 monooxygenases in triterpene biosynthesis and their potential impact on growth and development26
Molecular dissection of the parental contribution in Paeonia Itoh hybrids26
Leaf transcriptomes from C3, C3-C4 intermediate, and C4Neurachne species give insights into C4 photosynthesis evolution26
CYTOSOLIC INVERTASE2 regulates flowering and reactive oxygen species-triggered programmed cell death in tomato26
Getting attached to membranes—How plant signaling networks employ PtdIns(4,5)P226
Restricting electron flow at cytochrome b6f when downstream electron acceptors are severely limited26
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