Microbial Ecology

Article	Citations
Forest Soil pH and Dissolved Organic Matter Aromaticity Are Distinct Drivers for Soil Microbial Community and Carbon Metabolism Potential	87
Microbiota and Nutrient Portraits of European Roe Deer (Capreolus capreolus) Rumen Contents in Characteristic Southern German Habitats	84
Polychaete Bioturbation Alters the Taxonomic Structure, Co-occurrence Network, and Functional Groups of Bacterial Communities in the Intertidal Flat	82
Seasonal Variations in the Characteristics of Microbial Community Structure and Diversity in Atmospheric Particulate Matter from Clean Days and Smoggy Days in Beijing	79
Changes in Carbon Partitioning and Pattern of Antioxidant Enzyme Activity Induced by Arginine Treatment in the Green Microalga Dunaliella salina Under Long-Term Salinity	63
The Toxic Effects of Cu and CuO Nanoparticles on Euplotes aediculatus	54
Molecular Characterisation of Faecal Bacterial Assemblages Among Four Species of Syntopic Odonates	53
Bacteriocin-Producing Enterococci Modulate Cheese Microbial Diversity	44
Impacts of Thermal Drainage on Bacterial Diversity and Community Construction in Tianwan Nuclear Power Plant	41
Recovery of Smelter-Impacted Peat and Sphagnum Moss: a Microbial Perspective	39
First Study Case of Microbial Biocontrol Agents Isolated from Aquaponics Through the Mining of High-Throughput Sequencing Data to Control Pythium aphanidermatum on Lettuce	36
Long-Read Sequencing Analysis Revealed the Impact of Forest Conversion on Soil Fungal Diversity in Limu Mountain, Hainan	36
Effects of Hyphomonas Strains on the Growth of Red Algae Pyropia Species by Attaching Specifically to Their Rhizoids	36
An Eco-evolutionary Model on Surviving Lysogeny Through Grounding and Accumulation of Prophages	35
Two Apriona Species Sharing a Host Niche Have Different Gut Microbiome Diversity	32
Fungal Communities Are More Sensitive to the Simulated Environmental Changes than Bacterial Communities in a Subtropical Forest: the Single and Interactive Effects of Nitrogen Addition and Precipitati	30
Detection of blaTEM, blaCTX-M, blaCMY, and blaSHV Genes Among Extended-Spectrum Beta-Lactamase-Producing Escherichia coli Isolated from Migratory Birds Travelling to Bangladesh	30
Moss and Liverwort Covers Structure Soil Bacterial and Fungal Communities Differently in the Icelandic Highlands	29
Non-native PGPB Consortium Altered the Rhizobacterial Community and Slightly Stimulated the Growth of Winter Oilseed Rape (Brassica napus L.) Under Field Conditions	29
Unveiling Diversity and Function: Venom-Associated Microbes in Two Spiders, Heteropoda venatoria and Chilobrachys guangxiensis	27
Plant G × Microbial E: Plant Genotype Interaction with Soil Bacterial Community Shapes Rhizosphere Composition During Invasion	27
Differences in Precipitation Regime Shape Microbial Community Composition and Functional Potential in Namib Desert Soils	27
Soil Bacterial Communities Across Seven Rhizoma Peanut Cultivars (Arachis glabrata Benth.) Respond to Seasonal Variation	26
Transcriptional Changes in Bifidobacterium bifidum Involved in Synergistic Multispecies Biofilms	25
Dynamics of Legionella Community Interactions in Response to Temperature and Disinfection Treatment: 7 Years of Investigation	25

Species Identity, Life History, and Geographic Distance Influence Gut Bacterial Communities in Lab-Reared and European Field-Collected Culicoides Biting midges	24
Fungal Patterns from Soils in Madagascar: an Insight from Maromizaha Forest (Evergreen Humid Forest) to Outside (Deciduous Forest)	22
Microbial Community Shifts on Organic Rocks of Different Maturities Reveal potential Catabolisers of Organic Matter in Coal	22
Inoculation with Native Actinobacteria May Improve Desert Plant Growth and Survival with Potential Use for Restoration Practices	22
Plant Growth Promoting Bacterial Consortium Induces Shifts in Indigenous Soil Bacterial Communities and Controls Listeria monocytogenes in Rhizospheres of Cajanus cajan and Festuca arundinacea	22
Stronger Geographic Limitations Shape a Rapid Turnover and Potentially Highly Connected Network of Core Bacteria on Microplastics	22
Comparative Analyses of Scylla olivacea Gut Microbiota Composition and Function Suggest the Capacity for Polyunsaturated Fatty Acid Biosynthesis	21
Increasing Phylogenetic Clustering of Arbuscular Mycorrhizal Fungal Communities in Roots Explains Enhanced Plant Growth and Phosphorus Uptake	21
Bartonella Infection in Fruit Bats and Bat Flies, Bangladesh	21
Significant Effects of Associated Microorganisms on the Community of Photosynthetic Picoeukaryotes	21
Influence of Maize Residues in Shaping Soil Microbiota and Fusarium spp. Communities	21
Description and Genomic Analysis of the First Facultatively Lithoautotrophic, Thermophilic Bacteria of the Genus Thermaerobacter Isolated from Low-temperature Sediments of Lake Baikal	21
Gut Transplants from Bees Fed an Antipathogenic Pollen Diet Do Not Confer Pathogen Resistance to Recipients	21
Anaerobic Degradation of Naphthalene and Pyrene by Sulfate-Reducing Cultures Enriched from Former Manufactured Gas Plant Soil	20
Correction to: Fungal and Bacterial Diversity in the Tuber magnatum Ecosystem and Microbiome	20
Integrated Biogeography and Assembly Mechanisms of Microeukaryotic Communities in Coastal Waters Near Shellfish Cultivation	20
Seasonal Variation of Hypolithic Microbiomes in the Gobi Desert	20
Liquid Organic Fertilizer Amendment Alters Rhizosphere Microbial Community Structure and Co-occurrence Patterns and Improves Sunflower Yield Under Salinity-Alkalinity Stress	20
Mosquito Microbiomes of Rwanda: Characterizing Mosquito Host and Microbial Communities in the Land of a Thousand Hills	20
Gut Microbial Composition of Cyprinella lutrensis (Red Shiner) and Notropis stramineus (Sand Shiner): Insights from Wild Fish Populations	20
Gut Site and Gut Morphology Predict Microbiome Structure and Function in Ecologically Diverse Lemurs	19
Chemical Stimulation of Heterocyte Differentiation by the Feather Moss Hylocomium splendens: a Potential New Step in Plant-Cyanobacteria Symbioses	19
Novel Extrapolymeric Substances Biocoating on Polyvinylidene Fluoride Membrane for Enhanced Attached Growth of Navicula incerta	19
Sources of Fungal Symbionts in the Microbiome of a Mobile Insect Host, Spodoptera frugiperda	19
The Responses of Ammonia-Oxidizing Microorganisms to Different Environmental Factors Determine Their Elevational Distribution and Assembly Patterns	19
Study on Effects of Probiotics on Gut Microbiome and Clinical Course in Patients with Critical Care Illnesses	18
Metagenomic Analysis of Bacterial Community and Isolation of Representative Strains from Vranjska Banja Hot Spring, Serbia	18
Effects of Reductive Soil Disinfestation Combined with Liquid-Readily Decomposable Compounds and Solid Plant Residues on the Bacterial Community and Functional Composition	18
Schoolyard Biodiversity Determines Short-Term Recovery of Disturbed Skin Microbiota in Children	18
Local Community Assembly Mechanisms and the Size of Species Pool Jointly Explain the Beta Diversity of Soil Fungi	18
Prolonged Effect of Forest Soil Compaction on Methanogen and Methanotroph Seasonal Dynamics	18
Environmental Proteomics Elucidates Phototrophic Biofilm Responses to Ornamental Lighting on Stone-built Heritage	17
How Communities of Marine Stramenopiles Varied with Environmental and Biological Variables in the Subtropical Northwestern Pacific Ocean	17
Dynamics of Microbial Communities across the Life Stages of Nilaparvata lugens (Stål)	17
Unveiling the Biochar-Respiratory Growth of Methanosarcina acetivorans Involving Extracellular Polymeric Substances	17
Deciphering the Synergies of Reductive Soil Disinfestation Combined with Biochar and Antagonistic Microbial Inoculation in Cucumber Fusarium Wilt Suppression Through Rhizosphere Microbiota Structure	17
Characterization of Grapevine Wood Microbiome Through a Metatranscriptomic Approach	17
Influence of Growth Support on the Diversity, Composition, and Functionality of Microbial Communities Associated with Tillandsia recurvata	17
Two Complete Genomes of Male-Killing Wolbachia Infecting Ostrinia Moth Species Illuminate Their Evolutionary Dynamics and Association with Hosts	17
Comparative Analysis Between Paramecium Strains with Different Syngens Using the RAPD Method	17
Nutrient Removal in Eutrophic Water Promotes Stability of Planktonic Bacterial and Protist Communities	16
Mechanisms Driving the Distribution and Activity of Mineralization and Nitrification in the Reservoir Riparian Zone	16
Temperature Sensitivity of Microbial Litter Decomposition in Freshwaters: Role of Leaf Litter Quality and Environmental Characteristics	16
Exploring the Role of the NO-Detoxifying Enzyme HmpA in the Evolution of Domesticated Alfalfa Rhizobia	16
Subterranean Microbiome Affiliations of Plantain (Musa spp.) Under Diverse Agroecologies of Western and Central Africa	16
Highlighting the Phototherapeutical Potential of Fungal Pigments in Various Fruiting Body Extracts with Informed Feature-Based Molecular Networking	16
The Bacterial Microbiome of the Coral Skeleton Algal Symbiont Ostreobium Shows Preferential Associations and Signatures of Phylosymbiosis	15
Dynamic Subspecies Population Structure of Vibrio cholerae in Dhaka, Bangladesh	15
Distinguishable Influence of the Delivery Mode, Feeding Pattern, and Infant Sex on Dynamic Alterations in the Intestinal Microbiota in the First Year of Life	15
Does Host Plant Drive Variation in Microbial Gut Communities in a Recently Shifted Pest?	15

The Genetic Diversity of Rickettsiella Symbionts in Ixodes ricinus Throughout Europe	15
A Novel Constructed Wetland Combined with Microbial Desalination Cells and its Application	15
Snow Microorganisms Colonise Arctic Soils Following Snow Melt	15
Arbuscular Mycorrhizal Fungi Compete Asymmetrically for Amino Acids with Native and Invasive Solidago	15
Microsporidian Infection in Mosquitoes (Culicidae) Is Associated with Gut Microbiome Composition and Predicted Gut Microbiome Functional Content	15
Sediment DNA Records the Critical Transition of Bacterial Communities in the Arid Lake	15
Synergistic Impacts of Arsenic and Antimony Co-contamination on Diazotrophic Communities	15
Bipolar Biogeographical Distribution of Parafrancisella Bacteria Carried by the Ciliate Euplotes	15
Fishing for the Microbiome of Tropical Tuna	15
A Recipe for Success: Three Key Strategies Used by Aphids and Pseudomonas syringae to Colonize the Phyllosphere	15
Vibrio cholerae O1 Inhabit Intestines and Spleens of Fish in Aquaculture Ponds	15
Spatial and Temporal Shifts of Endophytic Bacteria in Conifer Seedlings of Abies religiosa (Kunth) Schltdl. & Cham.	15
Correction to: Linking Genes to Traits in Fungi	15
Correction to: Mediative Mechanism of Freezing/Thawing on Greenhouse Gas Emissions in an Inland Saline Alkaline Wetland: a Metagenomic Analysis	14
Biological Nitrification Inhibitors with Antagonistic and Synergistic Effects on Growth of Ammonia Oxidisers and Soil Nitrification	14
Epilithic Bacterial Assemblages on Subtidal Rocky Reefs: Variation Among Alternative Habitats at Ambient and Enhanced Nutrient Levels	14
Bacillus spp. as Bio-factories for Antifungal Secondary Metabolites: Innovation Beyond Whole Organism Formulations	14
Impacts of 10 Years of Elevated CO2 and Warming on Soil Fungal Diversity and Network Complexity in a Chinese Paddy Field	14
Environmental Temperature, but Not Male Age, Affects Wolbachia and Prophage WO Thereby Modulating Cytoplasmic Incompatibility in the Parasitoid Wasp, Habrobracon Hebetor	14
The Next Generation of Microbial Ecology and Its Importance in Environmental Sustainability	14
Identifying the Role of Elevation, Geography, and Species Identity in Structuring Turtle Ant (Cephalotes Latreille, 1802) Bacterial Communities	14
Correction to: Gut Microbiota in Decapod Shrimps: Evidence of Phylosymbiosis	14
Correction to: Degradation of Uranium-Contaminated Decontamination Film by UV Irradiation and Microbial Biodegradation	14
Risk of Collapse in Water Quality in the Guandu River (Rio de Janeiro, Brazil)	14
The Hyphosphere of Leaf-Cutting Ant Cultivars Is Enriched with Helper Bacteria	13
In Vitro Studies Reveal that Pseudomonas, from Odontotermes obesus Colonies, can Function as a Defensive Mutualist as it Prevents the Weedy Fungus While Keeping the Crop Fungus Unaffected	13
Rhizosphere Engineering of Biocontrol Agents Enriches Soil Microbial Diversity and Effectively Controls Root-Knot Nematodes	13
Structure and Functions of Endophytic Bacterial Communities Associated with Sphagnum Mosses and Their Drivers in Two Different Nutrient Types of Peatlands	13
Polyurethane-Degrading Potential of Alkaline Groundwater Bacteria	13
Metagenomics Unveils Microbial Diversity and Their Biogeochemical Roles in Water and Sediment of Thermokarst Lakes in the Yellow River Source Area	13
Distinct Phyllosphere Microbiome of Wild Tomato Species in Central Peru upon Dysbiosis	13
Impact of Cultivation and Origin on the Fruit Microbiome of Apples and Blueberries and Implications for the Exposome	13
Genomic and Transcriptomic Diversification of Flagellin Genes Provides Insight into Environmental Adaptation and Phylogeographic Characteristics in Aeromonas hydrophila	13
Climate and Environmental Variables Drive Stream Biofilm Bacterial and Fungal Diversity on Tropical Mountainsides	13
Successional Changes of Microbial Communities and Host-Microbiota Interactions Contribute to Dietary Adaptation in Allodiploid Hybrid Fish	13
Regime transition Shapes the Composition, Assembly Processes, and Co-occurrence Pattern of Bacterioplankton Community in a Large Eutrophic Freshwater Lake	13
Response of Alternaria and Fusarium Species to Low Precipitation in a Drought-Tolerant Plant in Morocco	13
Analysis of diversity and function of epiphytic bacterial communities associated with macrophytes using a metagenomic approach	13
Distinct Communities and Differing Dispersal Routes in Bacteria and Fungi of Honey Bees, Honey, and Flowers	12
Changes in Soil Organic C Fractions and C Pool Stability Are Mediated by C-Degrading Enzymes in Litter Decomposition of Robinia pseudoacacia Plantations	12
Phosphate-Solubilizing Bacillus sp. Modulate Soil Exoenzyme Activities and Improve Wheat Growth	12
Succession of Fungal Communities and Their Functional Profiles in a Decaying Foundation Species	12
Response to “Risk of Collapse in Water Quality in the Guandu River (Rio de Janeiro, Brazil)” by Bacha et al., Published Online 23 August 2021, Microbial Ecology, 10.1007/s00248-021–01,839-z	12
Microbial Catabolic Activity: Methods, Pertinence, and Potential Interest for Improving Microbial Inoculant Efficiency	12
Whole-Genome Resequencing of Spontaneous Oxidative Stress-Resistant Mutants Reveals an Antioxidant System of Bradyrhizobium japonicum Involved in Soybean Colonization	12
The Diversity and Metabolism of Culturable Nitrate-Reducing Bacteria from the Photic Zone of the Western North Pacific Ocean	12
Insights into the Endophytic Bacterial Microbiome of Crocus sativus: Functional Characterization Leads to Potential Agents that Enhance the Plant Growth, Productivity, and Key Metabolite Content	12
Temperate Coastal Microbial Communities Rapidly Respond to Low Concentrations of Partially Weathered Diesel	12
Epigenetic Regulation in Response to CO2 Fluctuation in Marine Microalga Nannochloropsis oceanica	12
Bacteria Associated with Spores of Arbuscular Mycorrhizal Fungi Improve the Effectiveness of Fungal Inocula for Red Raspberry Biotization	12
Mosquito Microbiome Diversity Varies Along a Landscape-Scale Moisture Gradient	12
Distinct Nitrification Rates and Nitrifiers in Needleleaf and Evergreen Broadleaf Forest Soils	12
Marine Heatwave Caused Differentiated Dysbiosis in Photosymbiont Assemblages of Corals and Hydrocorals During El Niño 2015/2016	12
River Sediments Downstream of Villages in a Karstic Watershed Exhibited Increased Numbers and Higher Diversity of Nontuberculous Mycobacteria	12
Estuarine Sediment Microbiomes from a Chronosequence of Restored Urban Salt Marshes	12
Bat Cutaneous Microbial Assemblage Functional Redundancy Across a Host-Mediated Disturbance	12
Letter to Microbial Ecology	12
A Metagenomic Time-Series Approach to Assess the Ecological Stability of Microbial Mats in a Seasonally Fluctuating Environment	12
Selected Bacteria Are Critical for Karst River Carbon Sequestration via Integrating Multi-omics and Hydrochemistry Data	12
Paenibacillus as a Biocontrol Agent for Fungal Phytopathogens: Is P. polymyxa the Only One Worth Attention?	12
Gut Microbial Divergence Between Three Hadal Amphipod Species from the Isolated Hadal Trenches	11
Uncovering the Fungal Community Composition of Alive and Dead Posidonia oceanica Matte	11
Microbiome of Zoophytophagous Biological Control Agent Nesidiocoris tenuis	11
The Abrolhos Nominally Herbivorous Coral Reef Fish Acanthurus chirurgus, Kyphosus sp., Scarus trispinosus, and Sparisoma axillare Have Similarities in Feeding But Species-Specific Microbiomes	11
Differential Response of the Microbiome of Pocillopora acuta to Reciprocal Transplantation Within Singapore	11
Genomic Comparisons of Two Armillaria Species with Different Ecological Behaviors and Their Associated Soil Microbial Communities	11
Genotype-Controlled Vertical Transmission Exerts Selective Pressure on Community Assembly of Salvia miltiorrhiza	11
Environmental Effects on Bee Microbiota	11
Disentangling the Ecological Processes and Driving Forces Shaping the Seasonal Pattern of Halobacteriovorax Communities in a Subtropical Estuary	11
Environment and Host Genetics Influence the Biogeography of Plant Microbiome Structure	11
Massoia Lactone Displays Strong Antifungal Property Against Many Crop Pathogens and Its Potential Application	11
Cyanosphere Dynamic During Dolichospermum Bloom: Potential Roles in Cyanobacterial Proliferation	11
Plant Gender Affects Soil Fungal Microbiota Associated with Welwitschia mirabilis, an Unusual Desert Gymnosperm	11
Prokaryotic Diversity and Community Distribution in the Complex Hydrogeological System of the Añana Continental Saltern	11
Fungal and Bacterial Diversity in the Tuber magnatum Ecosystem and Microbiome	11
The Effects of Shrub Removal on Soil Microbial Communities in Primary Forest, Secondary Forest and Plantation Forest on Changbai Mountain	10
A Comprehensive Insight of Current and Future Challenges in Large-Scale Soil Microbiome Analyses	10
Metagenomic Analysis of Biochemical Passive Reactors During Acid Mine Drainage Bioremediation Reveals Key Co-selected Metabolic Functions	10
Host-Associated Bacterial Communities Vary Between Daphnia galeata Genotypes but Not by Host Genetic Distance	10
Macrofaunal Distribution, Diversity, and Its Ecological Interaction at the Cold Seep Site of Krishna-Godavari Basin, East Coast of India	10

Multilayer Networks Assisting to Untangle Direct and Indirect Pathogen Transmission in Bats	10
Antibiotic Activity Altered by Competitive Interactions Between Two Coral Reef–Associated Bacteria	10
Metagenomics Analysis to Investigate the Microbial Communities and Their Functional Profile During Cyanobacterial Blooms in Lake Varese	10
Rewilding in Miniature: Suburban Meadows Can Improve Soil Microbial Biodiversity and Soil Health	10
Phosphorus Fertilization Boosts Mineral-Associated Soil Organic Carbon Formation Associated with Phagotrophic Protists	10
The Epidermal Microbiome Within an Aggregation of Leopard Sharks (Triakis semifasciata) Has Taxonomic Flexibility with Gene Functional Stability Across Three Time-points	10
Influence of Environmental Factors on Salivary Microbiota and Their Metabolic Pathway: Next-Generation Sequencing Approach	10
Dysbiosis and Predicted Functions of the Dental Biofilm of Dairy Goats with Periodontitis	10
Fungal Communities of Spring Barley from Seedling Emergence to Harvest During a Severe Puccinia hordei Epidemic	10
Understanding Responses of Soil Microbiome to the Nitrogen and Phosphorus Addition in Metasequoia glyptostroboides Plantations of Different Ages	10
Coral and Seawater Metagenomes Reveal Key Microbial Functions to Coral Health and Ecosystem Functioning Shaped at Reef Scale	10
Uncovering Active Bacterial Symbionts in Three Species of Pollen-feeding Beetles (Nitidulidae: Meligethinae)	10
Disruption of Genes Encoding Putative Zwitterionic Capsular Polysaccharides of Diverse Intestinal Bacteroides Reduces the Induction of Host Anti-Inflammatory Factors	10
Intraspecific Competition Results in Reduced Evenness of Tuber melanosporum Mating-Type Abundance from the Nursery Stage	10
Correction to: Comparative Analyses of Scylla olivacea Gut Microbiota Composition and Function Suggest the Capacity for Polyunsaturated Fatty Acid Biosynthesis	10
Correction to: First Genome of Labyrinthula sp., an Opportunistic Seagrass Pathogen, Reveals Novel Insight into Marine Protist Phylogeny, Ecology and CAZyme Cell-Wall Degradation	9
Soil Suppressiveness Against Pythium ultimum and Rhizoctonia solani in Two Land Management Systems and Eleven Soil Health Treatments	9
Strong Linkage Between Symbiotic Bacterial Community and Host Age and Morph in a Hemipteran Social Insect	9
Life in the Wheat Litter: Effects of Future Climate on Microbiome and Function During the Early Phase of Decomposition	9
Nitrogen Fertilization Increases Soil Microbial Biomass and Alters Microbial Composition Especially Under Low Soil Water Availability	9
Extended Ecological Restoration of Bacterial Communities in the Godavari River During the COVID-19 Lockdown Period: a Spatiotemporal Meta-analysis	9
Temporal Changes in Gut Microbiota Composition and Pollen Diet Associated with Colony Weakness of a Stingless Bee	9
Mycorrhizal Infection Can Ameliorate Abiotic Factors in Urban Soils	9
Comparative Analysis of Skin Bacterial Diversity and Its Potential Antifungal Function Between Desert and Pine Forest Populations of Boreal Toads Anaxyrus boreas	9
Ciliate Grazing on the Bloom-Forming Microalga Gonyostomum semen	9
Host Defense Metabolites Alter the Interactions between a Bark Beetle and its Symbiotic Fungi	9
Diverse Microbial Hot Spring Mat Communities at Black Canyon of the Colorado River	9
Reef Location and Client Diversity Influence the Skin Microbiome of the Caribbean Cleaner Goby Elacatinus evelynae	9
Temporal Variation in the Microbiome of Tropical and Temperate Octocorals	9
Impact of Sulfoxaflor Exposure on Bacterial Community and Developmental Performance of the Predatory Ladybeetle Propylea japonica	9
Inter-Kingdom Networks of Canola Microbiome Reveal Bradyrhizobium as Keystone Species and Underline the Importance of Bulk Soil in Microbial Studies to Enhance Canola Production	9
The Bacterial and Fungal Microbiota of the Mexican Rubiaceae Family Medicinal Plant Bouvardia ternifolia	9
Comparison of Deep-Sea Picoeukaryotic Composition Estimated from the V4 and V9 Regions of 18S rRNA Gene with a Focus on the Hadal Zone of the Mariana Trench	9
Diversity of Microbiomes Across a 13,000-Year-Old Amazon Sediment	9
Comparative Genomics Reveal the High Conservation and Scarce Distribution of Nitrogen Fixation nif Genes in the Plant-Associated Genus Herbaspirillum	9