Journal of Neuroscience Methods

Article	Citations
Disconnecting prefrontal cortical neurons from the ventral midline thalamus: Loss of specificity due to progressive neural toxicity of an AAV-Cre in the rat thalamus	115
Seed-based dual regression: An illustration of the impact of dual regression's inherent filtering of global signal	106
Improving suction technology for nerve activity recording	103
Objective neuromodulation basis for intrafascicular artificial somatosensation through carbon nanotube yarn electrodes	65
State of the art imaging of neurotransmission in animal models	62
Deep learning models for atypical serotonergic cells recognition	56
IDyOMpy: A new Python-based model for the statistical analysis of musical expectations	52
Potential mechanism and efficacy evaluation of transcranial focused ultrasound therapy for Alzheimer's disease	51
µ-rhythm phase from somatosensory but not motor cortex correlates with corticospinal excitability in EEG-triggered TMS	50
The larval diving response (LDR): Validation of an automated, high-throughput, ecologically relevant measure of anxiety-related behavior in larval zebrafish (Danio rerio)	47
Optimizing tissue clearing methods for improved imaging of whole-mount retinas and optic nerves	46
Editorial Board	46
A fisher linear discriminant analysis classifier fused with naïve Bayes for simultaneous detection in an asynchronous brain-computer interface	40
EEG Analyses of visual cue effects on executed movements	38
Abnormal EEG signal energy in the elderly: A wavelet analysis of event-related potentials during a stroop task	35
Self-attention-based convolutional neural network and time-frequency common spatial pattern for enhanced motor imagery classification	34
Phase-amplitude coupling detection and analysis of human 2-dimensional neural cultures in multi-well microelectrode array in vitro	34
Developmental, time-of-day, and stimulus-specific Golgi-Cox staining patterns detected in the mouse brain	33
Long-term organotypic brain slices cultured on collagen-based microcontact prints: A perspective for a brain-on-a-chip	33
A novel 5D brain parcellation approach based on spatio-temporal encoding of resting fMRI data from deep residual learning	33
Decoding fMRI data with support vector machines and deep neural networks	33
Imaging the endocannabinoid signaling system	32
Using a mixed-reality headset to elicit and track clinically relevant movement in the clinic	31
Identification and functional comparison of primary astrocytes and microglia	31
Decoding Autism: Uncovering patterns in brain connectivity through sparsity analysis with rs-fMRI data	30

Juggler’s ASR: Unpacking the principles of artifact subspace reconstruction for revision toward extreme MoBI	30
Theoretical and methodological analysis of EEG based seizure detection and prediction: An exhaustive review	30
Full-field exposure of larval zebrafish to narrow waveband LED light sources at defined power and energy for optogenetic applications	29
Determining the atlas correspondence of Desikan-Killiany-Tourville and Glasser MMP1 atlases across magnetic field strengths	29
Longitudinal EEG-based assessment of neuroplasticity and adaptive responses to transcranial focused ultrasound stimulation	29
Editorial Board	28
In a century from agitated cells to human organoids	28
Recognizable rehabilitation movements of multiple unilateral upper limb: An fMRI study of motor execution and motor imagery	28
A fast and efficient method for isolating and culturing enteric neural precursor cells from adult mouse colon	28
Wide field block face imaging using deep ultraviolet induced autofluorescence of the human brain	27
A comparison of confocal and epifluorescence microscopy for quantification of RNAScope and immunohistochemistry fluorescent images	26
Editorial Board	25
How to study sleep apneas in mouse models of human pathology	25
Proper reference selection and re-referencing to mitigate bias in single pulse electrical stimulation data	24
Validation of structure tensor analysis for orientation estimation in brain tissue microscopy	24
Drawing time-density curve with Fiji/ImageJ: An alternative approach for parametric coding of cerebral digital subtraction angiography	23
TMS-EEG responses across the lifespan: Measurement, methods for characterisation and identified responses	23
Evaluation of the deep learning-based detection of dopaminergic neurons in primary culture: A practical alternative to manual counting	22
Electrophysiological and morphological characterization of single neurons in intact human brain organoids	22
CircadiPy: An open-source toolkit for analyzing chronobiology time series	22
Editorial Board	21
A conditional GABAergic synaptic vesicle marker for Drosophila	21
Adoption of deep learning-based magnetic resonance image information diagnosis in brain function network analysis of Parkinson’s disease patients with end-of-dose wearing-off	21
TAAC - TMS Adaptable Auditory Control: A universal tool to mask TMS clicks	21
The 3D Vertical Maze: A new model system for studying the interactions between social and spatial cognition	21
Continual cerebrospinal fluid sampling in the neonatal domestic piglet for biomarker and discovery studies	20
Atraumatic access to human glioblastoma in a xenograft animal model by cerebral open flow microperfusion	20
A new protocol for the development of organoids based on molecular mechanisms in the developing newborn rat brain: Prospective applications in the study of Alzheimer’s disease	20
Mouse model of voluntary movement deficits induced by needlestick injuries to the primary motor cortex	20
Direct dorsal root ganglia (DRG) injection in mice for analysis of adeno-associated viral (AAV) gene transfer to peripheral somatosensory neurons	20
Applying the area fraction fractionator (AFF) probe for total volume estimations of somatic, dendritic and axonal domains of the nigrostriatal dopaminergic system in a murine model	19
Analysis of modulations of mental fatigue on intra-individual variability from single-trial event related potentials	19
Special issue on TMS-EEG methods, data analysis and processing	19
A practical test for retronasal odor identification based on aromatized tablets	19
LANMAO sleep recorder versus polysomnography in neonatal EEG recording and sleep analysis	19
Reconstruction of natural images from human fMRI using a three-stage multi-level deep fusion model	18
Neurorehabilitation strategies: Assessing the impact on postoperative psychological state, pain, and complications in trigeminal neuralgia	18
Reconstructing time-domain data from discontinuous Percept™ PC and RC output using external data acquisition and linear filtering	18
Unsupervised alignment in neuroscience: Introducing a toolbox for Gromov–Wasserstein optimal transport	18
Electrode configurations for sensitive and specific detection of compound muscle action potentials to the tibialis anterior muscle after peroneal nerve injury in rats	17
A novel rat model of cerebral small vessel disease and evaluation by super-resolution ultrasound imaging	17
Measuring spatial visual loss in rats by retinotopic mapping of the superior colliculus using a novel multi-electrode array technique	17
Investigation into the influence of stimulation area and coil orientation on the results of navigated transcranial magnetic stimulation (nTMS) mapping of lower limb intracortical excitability	17
Primary culture of inner ear schwannoma	17
Editorial Board	17
A novel method for sparse dynamic functional connectivity analysis from resting-state fMRI	17
A 120-target brain-computer interface based on code-modulated visual evoked potentials	17
AutoRG: An automatized reach-to-grasp platform technology for assessing forelimb motor function, neural circuit activation, and cognition in rodents	16
Automated lever task with minimum antigravity movement for rats with cervical spinal cord injury	16
Unlocking non-invasive brain stimulations for Next-Gen Clinical Speciality: Opportunities, challenges and future	16

Real-time estimation of perceptual thresholds based on the electroencephalogram using a deep neural network	16
Multi-view graph fusion of self-weighted EEG feature representations for speech imagery decoding	16
Characterization of the echo-time dependence of spin-echo BOLD fMRI at 3 Tesla in grey and white matter	16
Comparative evaluation of cerebral tissue pretreatment strategies for metabolomics using UHPLC-high-resolution mass spectrometry	16
Visiomode: An open-source platform for building rodent touchscreen-based behavioral assays	15
Two phases of macrophages: Inducing maturation and death of oligodendrocytes in vitro co-culture	15
Enhancing therapeutic efficacy of fingolimod via intranasal delivery in an ethidium bromide-induced model of multiple sclerosis	15
An electrode-impedance-aware neurostimulator IC that achieves low-power consumption and fast charge balance	15
Selective isolation of mouse glial nuclei optimized for reliable downstream omics analyses	15
Membrane-coated glass electrodes for stable, low-noise electrophysiology recordings in Drosophila central neurons	15
Detection of eye movements and eye blinks using a portable two-channel EEG platform	15
Chronic brain functional ultrasound imaging in freely moving rodents performing cognitive tasks	15
Systematic development of immunohistochemistry protocol for large cryosections-specific to non-perfused fetal brain	15
Behavioral phenotyping based on physical inactivity can predict sleep in female rats before, during, and after sleep disruption	15
Cross prior Bayesian attention with correlated inception and residual learning for brain tumor classification using MR images (CB-CIRL Net)	15
A novel approach of brain-computer interfacing (BCI) and Grad-CAM based explainable artificial intelligence: Use case scenario for smart healthcare	15
Effects of inter-stimulus intervals on concurrent P300 and SSVEP features for hybrid brain-computer interfaces	15
A method for the selective depletion of microglia in the dorsal hippocampus in the juvenile rat brain	14
biPACT: A method for three-dimensional visualization of mouse spinal cord circuits of long segments with high resolution	14
A miniature kinematic coupling device for mouse head fixation	14
BrainTRACE (Brain Tumor Registration and Cortical Electrocorticography): A novel tool for localizing electrocorticography electrodes in patients with brain tumors	14
A comparative study between a power and a connectivity sEEG biomarker for seizure-onset zone identification in temporal lobe epilepsy	14
Improving the accuracy of decoding monkey brain–machine interface data by estimating the state of unobserved cell assemblies	14
A new approach to symmetric registration of longitudinal structural MRI of the human brain	14
Generation and validation of a D1 dopamine receptor Flpo knock-in mouse	14
Dementia rhythms: Unveiling the EEG dynamics for MCI detection through spectral and synchrony neuromarkers	13
Retraction notice to “Lightweight attention mechanisms for EEG emotion recognition for brain computer interface”	13
RETRACTED: Lightweight attention mechanisms for EEG emotion recognition for brain computer interface	13
Brain MRIs classification based on 2D SWD-MF-DFA	13
The superiority verification of morphological features in the EEG-based assessment of depression	13
Closed-loop phase-targeted stimulation during sleep: Open-source benchmarking of methods and a novel algorithm for the epileptic brain	12
EC-FST: A novel pipeline for automatically analyzing mouse forced swim test	12
Exploring the light/dark box test: Protocols and implications for neuroscience research	12
Pupillometry is sensitive to speech masking during story listening: A commentary on the critical role of modeling temporal trends	12
A novel thermoelectric device integrated with a psychophysical paradigm to study pain processing in human subjects	12
Multi-scale self-attention approach for analysing motor imagery signals in brain-computer interfaces	12
A chinrest-based approach to measure eye movements and experimental task engagement in macaques with minimal restraint	12
Imaging mitochondrial calcium dynamics in the central nervous system	12
Training the spatially-coded SSVEP BCI on the fly	12
Detectability and accuracy of computational measurements of in-silico and physical representations of enlarged perivascular spaces from magnetic resonance images	12
Microelectrode clusters enable therapeutic deep brain stimulation without noticeable side-effects in a rodent model of Parkinson’s disease	12
Integrated Short-TE and Hadamard-edited Multi-Sequence (ISTHMUS) for advanced MRS	12
Towards the automated detection of interictal epileptiform discharges with magnetoencephalography	11
Estimation of complete mutual information exploiting nonlinear magnitude-phase dependence: Application to spatial FNC for complex-valued fMRI data	11
Assessing the impact of transcranial electrical stimulation on intracranial and cerebral perfusion pressures in patients with severe craniocerebral injury: A novel methodological approach	11
Method of long-term, recurrent, intracerebroventricular infusion of cellular therapy in mice	11
Editorial Board	11
Activity‐State Entropy: A novel brain entropy measure based on spatial patterns of activity	11
Optimization of permeabilized brain tissue preparation to improve the analysis of mitochondrial oxidative capacities in specific subregions of the rat brain	11
A new patterned air-flow device to reveal the network for tactile motion coding using fMRI	11
Addressing the elephant in the T-maze: Developing experimental conduct guidelines for neuroscience	11
Low-quality training data detection method of EEG signals for motor imagery BCI system	11
An autonomous hybrid brain-computer interface system combined with eye-tracking in virtual environment	11
Exploring persistence in animal models: The sinking platform test	11
Correlating brain arteriovenous malformations location with clinical and angio-architectural characteristics: A voxel-based lesion symptom mapping approach	11
Editorial Board	11
Automating behavioral analysis in neuroscience: Development of an open-source python software for more consistent and reliable results	11
Cognitive driven gait freezing phase detection and classification for neuro-rehabilitated patients using machine learning algorithms	10
Spatio-Spectral CCA (SS-CCA): A novel approach for frequency recognition in SSVEP-based BCI	10
Spatial nonstationarity of image noise in widefield optical imaging and its effects on cluster-based inference for resting-state functional connectivity	10
Brain-computer interfaces inspired spiking neural network model for depression stage identification	10
Adaptations to the neuronal culture for researchers at undergraduate institutions	10
A Weighted Head Accelerator Mechanism (WHAM) for visualizing brain rheology using magnetic resonance imaging	10
Establishing In-vivo brain microdialysis for comparing concentrations of a variety of cortical neurotransmitters in the awake rhesus macaque between different cognitive states	10
Editorial Board	10
CLARITY in Alzheimer’s Research: Merging Tissue Transparency with Next-Gen Neurotechnologies	9
SIFIAE: An adaptive emotion recognition model with EEG feature-label inconsistency consideration	9
A novel ANN-based classification of spike-wave activity in 24-hour EEG recordings in rats using spectrograms: Spike-Wave Discharge Artificial Neural Network (SWAN)	9
Simultaneous isolation of intact brain cells and cell-specific extracellular vesicles from cryopreserved Alzheimer’s disease cortex	9
Comparing human annotation and machine learning models for optimizing zebrafish behavioral classification in seizure analysis	9
Editorial Board	9
Removing nonlinear misalignment in neuronal spike trains using the Fisher-Rao registration framework	9
Human spinal cord microglia/macrophages culture: Accutase digestion and non-enzymatic purification	9
Aseptic, semi-sealed cranial chamber implants for chronic multi-channel neurochemical and electrophysiological neural recording in nonhuman primates	9
Robust high spatio-temporal line-scanning fMRI in humans at 7T using multi-echo readouts, denoising and prospective motion correction	9
Convolutional Neural Networks for the segmentation of hippocampal structures in postmortem MRI scans	9
A comparison of lesion-overlap approaches to quantify corticospinal tract involvement in chronic stroke	9
Development of a 3D-immunofluorescence analysis for sensory nerve endings in human ligaments	9
A review of critical challenges in MI-BCI: From conventional to deep learning methods	9
Influence of threshold selection and image sequence in in-vivo segmentation of enlarged perivascular spaces	9

Dynamic functional network connectivity based on spatial source phase maps of complex-valued fMRI data: Application to schizophrenia	9
Three-dimensional imaging and computational quantitation as a novel approach to assess nerve fibers, enteric glial cells, mast cells, and the proximity of mast cells to the nerve fibers in human sigmo	9
Quantifying GFAP immunohistochemistry in the brain – Introduction of the Reactivity score (R-score) and how it compares to other methodologies	9
Intra-rater reliability and validity of neuro-mobinavigation: A mobile app and laser-guided system of motor HotSpot localization	9
Investigating dynamic causal network with unified Granger causality analysis	9
A novel method of neurophysiological brainstem mapping in neurosurgery	9
Guidelines for animal models of endurance and resistance exercise	8
WS-BiTM: Integrating White Shark Optimization with Bi-LSTM for enhanced autism spectrum disorder diagnosis	8
Implementation of the neuro-glia-vascular unit through co-culture of adult neural stem cells and vascular cells and transcriptomic analysis of diverse Aβ assembly types	8
Virtual histology of an entire mouse brain from formalin fixation to paraffin embedding. Part 2: Volumetric strain fields and local contrast changes	8
Spatial localization in target detection based on decoding N2pc component	8
Ramp protocol for non-linear cerebrovascular reactivity with transcranial doppler ultrasound	8
Effective R2 relaxation rate, derived from dual-contrast fast-spin-echo MRI, enables detection of hemisphere differences in iron level and dopamine function in Parkinson’s disease and healthy individu	8
Editorial Board	8
Ultrasound biomicroscopy in the quantification of brain perfusion parameters of a rat stroke model: Analysis of contrast agent bolus kinetic dynamics	8
Transcranial magnetic stimulation-based neuroplasticity in the treatment of amblyopia	8
Rats chasing the dragon: A new heroin inhalation method	8
Editorial Board	8
A comparison of transduction efficiency of medial septal neurons by adeno-associated viruses with three promoters	8
Identification and verification of a 'true' TMS evoked potential in TMS-EEG	8
Comparison of methods for the preparation of single-cell suspensions of rat retina and immunophenotyping by flow cytometry	8
Imaging and analysis of neuronal mitochondria in murine acute brain slices	8
Editorial Board	8
Functional connectomes incorporating phase synchronization for the characterization and prediction of individual differences	8
A method to study human synaptic protein-protein interactions by using flow cytometry coupled to proximity ligation assay (Syn-FlowPLA)	8
Assessing the nature of premature responses in the rodent continuous performance test variable intertrial interval schedule using atomoxetine and amphetamine	8
Classification of EEG signals: An interpretable approach using functional data analysis	8
The impact of temporal synchronisation imprecision on TRF analyses	7
Differences in conduction velocities of nerve fibers excited by infrared and electrical stimulation	7
Integrating neuroscience and artificial intelligence: EEG analysis using ensemble learning for diagnosis Alzheimer’s disease and frontotemporal dementia	7
Measuring the replicability of our own research	7
A refined Golgi-Cox method for the staining of embryonic neurons in the mouse brain	7
Functional MRI study with conductivity signal changes during visual stimulation	7
Toolkit for Oscillatory Real-time Tracking and Estimation (TORTE)	7
Facile method to incorporate high-affinity ACAT/SOAT1 inhibitor F12511 into stealth liposome-based nanoparticle and demonstration of its efficacy in blocking cholesteryl ester biosynthesis without ove	7
FB-EEGNet: A fusion neural network across multi-stimulus for SSVEP target detection	7
The use of integrated behavioural z-scoring in behavioural neuroscience – A perspective article	7
Mapping and quantifying neuropeptides in the enteric nervous system	7
μGlia-Flow, an automatic workflow for microglia segmentation and classification	7
A machine learning approach to identify stochastic resonance in human perceptual thresholds	7
Standardization of a silver stain to reveal mesoscale myelin in histological preparations of the mammalian brain	7
A method for estimating and characterizing explicitly nonlinear dynamic functional network connectivity in resting-state fMRI data	7
Analytic consistency and neural correlates of peak alpha frequency in the study of pain	7
Editorial Board	7
Editorial Board	7
A review on Alzheimer’s disease classification from normal controls and mild cognitive impairment using structural MR images	7
Isolation, culture, and characterization of primary endothelial cells and pericytes from mouse sciatic nerve	7
Commentary on “Cortical stimulation depth of nTMS investigated in a cohort of convexity meningiomas above the primary motor cortex”	7
Cortical stimulation depth of nTMS investigated in a cohort of convexity meningiomas above the primary motor cortex	7
Comparative analysis of spectral and temporal combinations in CSP-based methods for decoding hand motor imagery tasks	7
Food preference assay in male and female C57BL/6 mice	7
Proliferation of SH-SY5Y neuroblastoma cells on confined spaces	7
Brain tumor segmentation with deep learning: Current approaches and future perspectives	7
Dorsal myelotomy in E15–E16 fetal rat: A promising paradigm in regeneration research, with serendipitous transcriptomic effects on development, of the primary afferent system	7
Single-trial-based temporal principal component analysis on extracting event-related potentials of interest for an individual subject	7
Computer-controlled electrical stimulation of facial muscles by facial neuromuscular electrical stimulation (fNMES): Hardware and software solutions	6
Activation of primate frontal eye fields with a CMUT phased array system	6
Editorial Board	6
Assessment of voluntary drug and alcohol intake in Drosophila melanogaster using a modified one-tube capillary feeding assay	6
A new waveform analysis method reflecting the diversity of F-wave Waveforms–Waveform types in healthy subjects based on the combined use of the additive averaging method and histograms-	6
Voxeloc: A time-saving graphical user interface for localizing and visualizing stereo-EEG electrodes	6
A multiscale siamese convolutional neural network with cross-channel fusion for motor imagery decoding	6
Corrigendum to “An MRI protocol for anatomical and functional evaluation of the California sea lion brain” [J. Neurosci. Methods 353 (2021) 109097]	6
Correlative nano-imaging of metals and proteins in primary neurons by synchrotron X-ray fluorescence and STED super resolution microscopy: Experimental validation	6
Reconfiguration of cortical brain network from searching to spotting for dynamic visual targets	6
Median amplitude and frequency analysis of sensory nerve responses to intraepidermal stimulation	6
Spectrum dependency to rate and spike timing in neuronal spike trains	6
STSimM: A new tool for evaluating neuron model performance and detecting spike trains similarity	6
Assessment of neural function recovery in premature infants at high risk of brain injury using amplitude integrated electroencephalography and GMs scales	6
Quantification of early gait development: Expanding the application of Catwalk technology to an infant rhesus macaque model	6
Periodicity-based multi-dimensional interaction convolution network with multi-scale feature fusion for motor imagery EEG classification	6
REVS: A new open-source platform for high-resolution analysis of rodent wheel running behavior	6
A cranial implant for stabilizing whole-cell patch-clamp recordings in behaving rodents	6
A new gradient-based method for analyzing brain white matter fiber geometry	6
Editorial Board	6
A method for constructing a mouse model of congenital hearing loss by bilateral cochlear ablation	6
CT myelography by intrathecal injection of contrast medium though percutaneous administration route visualizes compressed cervical spinal cord in a mouse	6
Machine learning applications on neuroimaging for diagnosis and prognosis of epilepsy: A review	6
Evaluating the efficacy of non-invasive brain stimulation techniques in managing pediatric epilepsy	6
Development of a monoclonal antibody specific for a calpain-generated ∆48 kDa calcineurin fragment, a marker of distressed astrocytes	6
Automated system for training and assessing reaching and grasping behaviors in rodents	6
Holo-Hilbert spectral-based noise removal method for EEG high-frequency bands	6
Sensitivity analysis of the balloon model parameters in functional near-infrared spectroscopy simulation	5
A robust multi-branch multi-attention-mechanism EEGNet for motor imagery BCI decoding	5
Using dynamic spatio-temporal graph pooling network for identifying autism spectrum disorders in spontaneous functional infrared spectral sequence signals	5
“Counting sheep PSG”: EEGLAB-compatible open-source matlab software for signal processing, visualization, event marking and staging of polysomnographic data	5
Biocompatibility and customizability: Expanding possibilities with 3D printed guide cannulas	5
Comparison of electrical microstimulation artifact removal methods for high-channel-count prostheses	5
The ototoxic effect of locally applied kanamycin and furosemide in guinea pigs	5
Characterization of the GfaABC1D promoter to selectively target astrocytes in the rhesus macaque brain	5
Optogenetic control of peripheral nerves: A novel approach to modulation of detrusor contractility in vivo	5
Editorial Board	5
Micropipette-guided Drug Administration (MDA) as a non-invasive chronic oral administration method in male rats	5
Diagnosis of Alzheimer's disease based on regional attention with sMRI gray matter slices	5
DRGquant: A new modular AI-based pipeline for 3D analysis of the DRG	5