Journal of Neuroscience Methods

Article	Citations
Ramp protocol for non-linear cerebrovascular reactivity with transcranial doppler ultrasound	100
A wireless optogenetic setup in freely moving mice for evaluation of cortical spreading depolarization in a chronic disease model	92
EEG-based fatigue state evaluation by combining complex network and frequency-spatial features	83
Human pluripotent stem cell-derived microglia shape neuronal morphology and enhance network activity in vitro	81
Convolutional Neural Networks for the segmentation of hippocampal structures in postmortem MRI scans	68
Comparison of automated video tracking systems in the open field test: ANY-Maze versus EthoVision XT	62
IDyOMpy: A new Python-based model for the statistical analysis of musical expectations	62
Intra-rater reliability and validity of neuro-mobinavigation: A mobile app and laser-guided system of motor HotSpot localization	59
Primate eye tracking with carbon-nanotube-paper-composite based capacitive sensors and machine learning algorithms	49
EEG Analyses of visual cue effects on executed movements	49
Decoding EEG for optimizing naturalistic memory	48
Long-term organotypic brain slices cultured on collagen-based microcontact prints: A perspective for a brain-on-a-chip	47
CluSem: Accurate clustering-based ensemble method to predict motor imagery tasks from multi-channel EEG data	46
Mapping dependencies of BOLD signal change to end-tidal CO2: Linear and nonlinear modeling, and effect of physiological noise correction	41
An application of dynamical directed connectivity of ictal intracranial EEG recordings in seizure onset zone localization	40
Objective neuromodulation basis for intrafascicular artificial somatosensation through carbon nanotube yarn electrodes	38
Editorial Board	38
State of the art imaging of neurotransmission in animal models	37
The past and present of Drosophila models of traumatic brain injury	36
A behavioral paradigm for cortical control of a robotic actuator by freely moving rats in a one-dimensional two-target reaching task	35
Removing nonlinear misalignment in neuronal spike trains using the Fisher-Rao registration framework	33
Editorial Board	32
Development of a 3D-immunofluorescence analysis for sensory nerve endings in human ligaments	32
Editorial Board	31
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Modular, cement-free, customized headpost and connector-chamber implants for macaques	30
Multiplex imaging of human induced pluripotent stem cell-derived neurons with CO-Detection by indEXing (CODEX) technology	29
Self-attention-based convolutional neural network and time-frequency common spatial pattern for enhanced motor imagery classification	29
3D-mapping of TMS effects with automatic robotic placement improved reliability and the risk of spurious correlation	28
Identification and functional comparison of primary astrocytes and microglia	27
Editorial Board	26
Clinimetric properties of relevant criteria for assessing writing and drawing orientation after right hemisphere stroke	26
Implementation of the EQIPD Quality System	25
The EQIPD quality system – Assessment and certification procedures	25
Editorial Board	24
Animal studies in clinical MRI scanners: A custom setup for combined fMRI and deep-brain stimulation in awake rats	24
A novel integrated approach to estimate the mitochondrial content of neuronal cells and brain tissues	24
Detection of movement related cortical potentials in freehand drawing on digital tablet	24
Low-cost apparatus for cigarette smoke exposure in rats	24
Editorial Board	23
Inter-subject registration and application of the SIGMA rat brain atlas for regional labeling in functional ultrasound imaging	23
Test-retest reliability of the 5-minute psychomotor vigilance task in working-aged females	23
Editorial Board	23
Joint domain symmetry and predictive balance for cross-dataset EEG emotion recognition	22
Editorial Board	22
Editorial Board	22
A temporal classification method based on behavior time series data in patients with behavioral variant of frontotemporal dementia and apathy	22
Motor imagery EEG decoding using manifold embedded transfer learning	22
Non-rigid-registration-based positioning and labelling of triaxial OPMs on a flexible cap for wearable magnetoencephalography	22
Simultaneous flow cytometric characterization of multiple cell types and metabolic states in the rat brain after repeated mild traumatic brain injury	21
Discrete variational autoencoders BERT model-based transcranial focused ultrasound for Alzheimer's disease detection	21
Focused ultrasound stimulation of an ex-vivo Aplysia abdominal ganglion preparation	21
An EEG-based emotion recognition method by fusing multi-frequency-spatial features under multi-frequency bands	21
Editorial Board	20
A review of objective assessments for hyperactivity in attention deficit hyperactivity disorder	19
Seed-based dual regression: An illustration of the impact of dual regression's inherent filtering of global signal	19
Editorial Board	19
Using a mixed-reality headset to elicit and track clinically relevant movement in the clinic	19
Deep learning models for atypical serotonergic cells recognition	19
µ-rhythm phase from somatosensory but not motor cortex correlates with corticospinal excitability in EEG-triggered TMS	18
Nano dot blot: An alternative technique for protein identification and quantification in a high throughput format	18
An adaptive weighted attention-enhanced deep convolutional neural network for classification of MRI images of Parkinson's disease	18
WS-BiTM: Integrating White Shark Optimization with Bi-LSTM for enhanced autism spectrum disorder diagnosis	18
The use of happy faces as visual stimuli improves the performance of the hybrid SSVEP+P300 brain computer interface	18
Classification of EEG signals: An interpretable approach using functional data analysis	18
A fisher linear discriminant analysis classifier fused with naïve Bayes for simultaneous detection in an asynchronous brain-computer interface	17
Real-Time Semi-Automated and Automated Voxel Placement using fMRI Targets for Repeated Acquisition Magnetic Resonance Spectroscopy	17
Theoretical and methodological analysis of EEG based seizure detection and prediction: An exhaustive review	17
Virtual EEG-electrodes: Convolutional neural networks as a method for upsampling or restoring channels	17
Positive reinforcement-based magnet training permits social housing in catheterized squirrel monkeys	16
Fractal analysis to assess the differentiation state of oligodendroglia in culture	16
Method of intra-arterial drug administration in a rat: Sex based optimization of infusion rate	16
Fast variational alignment of non-flat 1D displacements for applications in neuroimaging	16
ExplantAnalyzer: An advanced automated neurite outgrowth analysis evaluated by means of organotypic auditory neuron explant cultures	15
Light-Dark Open Field (LDOF): A novel task for sensitive assessment of anxiety	15

Photo-transformable genetically-encoded optical probes for functional highlighting in vivo	15
Increased maturation of iPSC-derived neurons in a hydrogel-based 3D culture	15
Improving suction technology for nerve activity recording	15
All-optical electrophysiology in behaving animals	15
Folded concave penalized learning of high-dimensional MRI data in Parkinson’s disease	14
Comparison of corticospinal tract integrity measures extracted from standard versus native space in chronic stroke	14
Bringing together the best of chemistry and biology: hybrid indicators for imaging neuronal membrane potential	14
Comparison of wire and disc electrodes to electrically activate the inspiratory muscles in dogs	14
NeuriteNet: A convolutional neural network for assessing morphological parameters of neurite growth	14
Efficient infection of organotypic hippocampal slice cultures with adenovirus carrying the transgene REST/NRSF	14
An efficient cell culture system for the studies of heterogeneous astrocytes: Time gradient digestion	14
Frequency specific co-activation pattern analysis via sparse nonnegative tensor decomposition	14
Altered resting fMRI spectral power in data-driven brain networks during development: A longitudinal study	13
A novel 5D brain parcellation approach based on spatio-temporal encoding of resting fMRI data from deep residual learning	13
Parkinson’s disease rodent models: Are they suitable for DBS research?	13
A comparison of lesion-overlap approaches to quantify corticospinal tract involvement in chronic stroke	13
Methodological and analytical issues of progressive ratio schedules: Definition and scaling of breakpoint	13
Categorical predictive and disease progression modeling in the early stage of Alzheimer’s disease	13
Investigating dynamic causal network with unified Granger causality analysis	13
Imaging the endocannabinoid signaling system	13
Inter-trial coherence as a measure of synchrony in cervical vestibular evoked myogenic potentials	13
Abnormal EEG signal energy in the elderly: A wavelet analysis of event-related potentials during a stroop task	12
Disconnecting prefrontal cortical neurons from the ventral midline thalamus: Loss of specificity due to progressive neural toxicity of an AAV-Cre in the rat thalamus	12
A multi-channel EEG mini-cap can improve reliability for recording auditory brainstem responses in chinchillas	12
Simple methods for cerebrospinal fluid collection in fetal, neonatal, and adult rat	12
The larval diving response (LDR): Validation of an automated, high-throughput, ecologically relevant measure of anxiety-related behavior in larval zebrafish (Danio rerio)	12
High-frequency ultrasound-guided intrathecal injections in a young mouse model: Targeting the central nervous system in drug delivery	12
Observational learning in rats: Interplay between demonstrator and observer behavior	12
Clusterwise Independent Component Analysis (C-ICA): Using fMRI resting state networks to cluster subjects and find neurofunctional subtypes	12
Directionality quantification of in vitro grown dorsal root ganglion neurites using Fast Fourier Transform	12
Accelerometry as a tool for measuring the effects of transcranial magnetic stimulation	12
Open cranium model for the study of cerebrovascular dynamics in intracranial hypertension	11
Optogenetic estimation of synaptic connections in brain slices	11
Triple electroantennography captures the range and spatial arrangement of olfactory sensory neuron response on an insect antenna	11
Intraparenchymal near-infrared spectroscopy for detection of delayed cerebral ischemia in poor-grade aneurysmal subarachnoid hemorrhage	11
The impact of simultaneous intracranial recordings on scalp EEG: A finite element analysis	11
Decoding fMRI data with support vector machines and deep neural networks	11
GelMA hydrogel as a scaffold to enhance the survival and differentiation of human induced lateral ganglionic eminence precursor cells	11
Delay estimation for cortical-muscular interaction with wavelet coherence time lag	11
A practical protocol for high-spatial-resolution magnetic resonance angiography for cerebral arteries in rats	11
White matter and latency of visual evoked potentials during maturation: A miniature pig model of adolescent development	11
A method to study human synaptic protein-protein interactions by using flow cytometry coupled to proximity ligation assay (Syn-FlowPLA)	11
Ex vivo method for rapid quantification of post traumatic brain injury lesion volumes using ultrasound	11
Ultrasound biomicroscopy in the quantification of brain perfusion parameters of a rat stroke model: Analysis of contrast agent bolus kinetic dynamics	11
Rats chasing the dragon: A new heroin inhalation method	11
Using FASS-LTP in postmortem mice brain tissues to assess pathological synaptic function	11
Establishment of the glioma polyploid giant cancer cell model by a modified PHA-DMSO-PEG fusion method following dual drug-fluorescence screening in vitro	11
High quality, high throughput, and low-cost simultaneous video recording of 60 animals in operant chambers using PiRATeMC	10
A simple metric to study the mechanisms generating event-related potentials	10
Correcting physiological noise in whole-head functional near-infrared spectroscopy	10
To deconvolve, or not to deconvolve: Inferences of neuronal activities using calcium imaging data	10
A comprehensive protocol for efficient differentiation of human NPCs into electrically competent neurons	10
Controlling test specificity for auditory evoked response detection using a frequency domain bootstrap	10
A novel method of neurophysiological brainstem mapping in neurosurgery	10
Low concentration dimethyl sulfoxide (DMSO) modulates epileptiform synchronization in the 4-aminopyridine in vitro model	10
Virtual histology of an entire mouse brain from formalin fixation to paraffin embedding. Part 2: Volumetric strain fields and local contrast changes	10
Corrigendum to: “Towards the automated detection of interictal epileptiform discharges with magnetoencephalography” [J. Neurosci. Methods 403 (2024) 110052]	10
Development of deep learning models for microglia analyses in brain tissue using DeePathology™ STUDIO	10
MOD: A novel machine-learning optimal-filtering method for accurate and efficient detection of subthreshold synaptic events in vivo	10
Phase-amplitude coupling detection and analysis of human 2-dimensional neural cultures in multi-well microelectrode array in vitro	10
Improved brain effective connectivity modelling by dynamic Bayesian networks	10
A new method for physical disector analyses of numbers and mean volumes of immunohistochemically labeled cells in paraffin sections	10
The rt-TEP tool: real-time visualization of TMS-Evoked Potentials to maximize cortical activation and minimize artifacts	10
Improved inference in coupling, encoding, and decoding models and its consequence for neuroscientific interpretation	10
RPM: An open-source Rotation Platform for open- and closed-loop vestibular stimulation in head-fixed Mice	9
Advanced qEEG analyses discriminate between dementia subtypes	9
Assessing the nature of premature responses in the rodent continuous performance test variable intertrial interval schedule using atomoxetine and amphetamine	9
Use of a stable and solvent-soluble variant of Amylo-Glo, Amylo-Glo+, for the high-contrast and resolution fluorescent localization of amyloid plaques in murine and human brain tissue sections	9
A fast and efficient method for isolating and culturing enteric neural precursor cells from adult mouse colon	9
Identification of new behavioral parameters to assess odorant hedonic value in humans: A naturalistic approach	9
Removing artifacts from TMS-evoked EEG: A methods review and a unifying theoretical framework	9
Automated quantification of neuronal swellings in a preclinical rodent model of Parkinson’s disease detects region-specific changes in pathology	9
Editorial Board	9
High-frequency changes in single-trial visual evoked potentials for unattended stimuli in chronic schizophrenia	9
Improvement of olfactory fMRI activation and hemodynamic response function curve with respiration correction	9
Effects of the concentration level, eye fatigue and coffee consumption on the performance of a BCI system based on visual ERP-P300	9
A system based on machine learning for improving sleep	9
Identification and verification of a 'true' TMS evoked potential in TMS-EEG	9
Biophoton imaging identification of delayed functional neural circuit injury after cerebral ischemia-reperfusion	9
Editorial Board	9

Development of a protocol to assess within-subject, regional white matter hyperintensity changes in aging and dementia	9
Visualizing the cerebral distribution of chemical elements: A challenge met with LIBS elemental imaging	8
Editorial Board	8
Editorial Board	8
Operant conditioning with a stimulus discrimination: An alternative method for evaluating alcohol reinforcement in preweaning rats	8
Decoding Autism: Uncovering patterns in brain connectivity through sparsity analysis with rs-fMRI data	8
Multiple averaged records to identify Aδ-fibers in sensory nerves	8
Editorial Board	8
Editorial Board	8
Editorial Board	8
Multiscale modeling and analytical methods in neuroscience: Molecules, neural circuits, cognition and brain disorders	8
Functional connectomes incorporating phase synchronization for the characterization and prediction of individual differences	8
Quantifying defensive behavior and threat response through integrated headstage accelerometry	8
Editorial Board	8
Connections of the sheep basolateral amygdala: A diffusion tensor imaging study	8
Simulation of background neuronal activity and noise in human intracranial microwire recordings	8
Editorial Board	8
Editorial Board	8
Editorial Board	8
Neuronal network inference and membrane potential model using multivariate Hawkes processes	7
Developing a predictive value for predicting stroke recovery based on transcranial doppler ultrasound parameters	7
Practical solutions for including sex as a biological variable (SABV) in preclinical neuropsychopharmacological research	7
Relationship between burden of cerebral small vessel disease on imaging and cognitive impairment of COPD patients	7
Comparative analysis of spectral and temporal combinations in CSP-based methods for decoding hand motor imagery tasks	7
CircadiPy: An open-source toolkit for analyzing chronobiology time series	7
Simultaneous invasive and non-invasive recordings in humans: A novel Rosetta stone for deciphering brain activity	7
Recognizable rehabilitation movements of multiple unilateral upper limb: An fMRI study of motor execution and motor imagery	7
Methods for intratumoral microdialysis probe targeting and validation in murine brain tumor models	7
A behavioral screening method for predicting PTSD-like phenotypes: Novel application to female rats	7
An XAI-enhanced efficientNetB0 framework for precision brain tumor detection in MRI imaging	7
Introducing HiBoP: a Unity‐based visualization software for large iEEG datasets	7
Multimodal active subspace analysis for computing assessment oriented subspaces from neuroimaging data	7
Commentary on “Cortical stimulation depth of nTMS investigated in a cohort of convexity meningiomas above the primary motor cortex”	7
A new spatial contrast coding approach for SSVEP-based BCIs	7
Effective R2 relaxation rate, derived from dual-contrast fast-spin-echo MRI, enables detection of hemisphere differences in iron level and dopamine function in Parkinson’s disease and healthy individu	7
Development and optimization of an effective method for evaluating habituation learning behavior in larval zebrafish	7
Editorial Board	7
Integrating neuroscience and artificial intelligence: EEG analysis using ensemble learning for diagnosis Alzheimer’s disease and frontotemporal dementia	7
An automated planar patch-clamp approach to measure the membrane potential and resting membrane currents in a human cerebrovascular endothelial cell line	7
A machine learning approach to identify stochastic resonance in human perceptual thresholds	7
A new method to study learning and memory using spontaneous locomotor activity in an open-field arena	7
Cortical stimulation depth of nTMS investigated in a cohort of convexity meningiomas above the primary motor cortex	7
Combining blood pressure variability and heart rate variability to analyze the autonomic nervous function of rotenone induced Parkinson’s rat model	7
Editorial Board	7
Toolkit for Oscillatory Real-time Tracking and Estimation (TORTE)	7
Tissue oxygen partial pressure as a viability metric for ex vivo brain tissue slices	7
Multisite silicon probes enable simultaneous recording of spontaneous and evoked activity in multiple isolated C-fibres in rat saphenous nerve	6
Transduction profiles in minipig following MRI guided delivery of AAV-5 into thalamic and corona radiata areas	6
Label-free assessment of myelin status using birefringence microscopy	6
Chronic recording of cortical activity underlying vocalization in awake minipigs	6
Evaluating blood-brain barrier disruption and infarction volume concurrently in rats subjected to ischemic stroke using an optical imaging system	6
The impact of temporal synchronisation imprecision on TRF analyses	6
A novel 3D-printed multi-driven system for large-scale neurophysiological recordings in multiple brain regions	6
Modular and state-relevant functional network connectivity in high-frequency eyes open vs eyes closed resting fMRI data	6
Anatomical registration of intracranial electrodes. Robust model-based localization and deformable smooth brain-shift compensation methods	6
Full-field exposure of larval zebrafish to narrow waveband LED light sources at defined power and energy for optogenetic applications	6
Automated analyses for single-fiber electrophysiological recordings using a newly developed Microsoft Excel application and graphical user interface	6
Automated long-term two-photon imaging in head-fixed walking Drosophila	6
Imaging and analysis of neuronal mitochondria in murine acute brain slices	6
A novel estimation method for the counting of dendritic spines	6
A novel global ischemia-reperfusion rat model with asymmetric brain damage simulating post-cardiac arrest brain injury	6
Moving back in the brain to drive the field forward: Targeting neurostimulation to different brain regions in animal models of depression and neurodegeneration	6
High-resolution magnetic resonance imaging-based atlases for the young and adolescent domesticated pig (Sus scrofa)	6
Phenomenological model of auditory nerve population responses to cochlear implant stimulation	6
Molecular fMRI of neurochemical signaling	6
Cohesive parcellation of the human brain using resting-state fMRI	6
Optimizing multivariate pattern classification in rapid event-related designs	6
A conditional GABAergic synaptic vesicle marker for Drosophila	6
Recognizing the individualized sensorimotor loop of stroke patients during BMI-supported rehabilitation training based on brain functional connectivity analysis	6
Disjoint subspaces for common and distinct component analysis: Application to the fusion of multi-task FMRI data	6
Measuring phase-amplitude coupling between neural oscillations of different frequencies via the Wasserstein distance	5
A method for estimating and characterizing explicitly nonlinear dynamic functional network connectivity in resting-state fMRI data	5
Generation of induced pluripotent stem cells from rat fibroblasts and optimization of its differentiation into mature functional neurons	5
Development of a vestibular schwannoma tumor slice model for pharmacological testing	5
Implementation of the neuro-glia-vascular unit through co-culture of adult neural stem cells and vascular cells and transcriptomic analysis of diverse Aβ assembly types	5
A new method for preparing single-cell nuclear suspension of frozen spinal cord tissue	5
Multimodal predictive modeling: Scalable imaging informed approaches to predict future brain health	5
A novel DRL-guided sparse voxel decoding model for reconstructing perceived images from brain activity	5
Non-invasive brain stimulation to assess neurophysiologic underpinnings of lower limb motor impairment in multiple sclerosis	5
Detecting fast-ripples on both micro- and macro-electrodes in epilepsy: A wavelet-based CNN detector	5
Effect of motion state variability on error-related potentials during continuous feedback paradigms and their consequences for classification	5
Pushing the boundaries of brain-computer interfacing (BCI) and neuron-electronics	5
Spatial-frequency-temporal convolutional recurrent network for olfactory-enhanced EEG emotion recognition	5
Extraction of the GVS electrical artifact from EEG recordings of the motor related cortical potential	5
A bioassay for neuromuscular junction-restricted complement activation by myasthenia gravis acetylcholine receptor antibodies	5
Proliferation of SH-SY5Y neuroblastoma cells on confined spaces	5
Standardization of a silver stain to reveal mesoscale myelin in histological preparations of the mammalian brain	5
A novel stimulator to investigate the tuning of multi-whisker responsive neurons for speed and the direction of global motion: Contact-sensitive moving stimulator for multi-whisker stimulation	5
Affinity of structural white matter tracts between infant and adult pig	5
Cross-subject emotion recognition in brain-computer interface based on frequency band attention graph convolutional adversarial neural networks	5
Translating morphology from bench side to bed side via neurophysiology: 8-min protocol for peripheral neuropathy research	5
Using a new phase-locked visual feedback protocol to affirm simpler models for alpha dynamics	5
A quality control pipeline for probabilistic reconstruction of white-matter pathways	5
A partial habituation method to test for anterograde and retrograde amnestic treatment effects: Evidence that antagonism of the NMDA receptor can induce anterograde but not retrograde amnestic effects	5
Development of a novel three-dimensional injection guide for trigeminal ganglia	5