Journal of Neuroscience Methods

Article	Citations
EEG Analyses of visual cue effects on executed movements	109
Seed-based dual regression: An illustration of the impact of dual regression's inherent filtering of global signal	101
Improving suction technology for nerve activity recording	95
Objective neuromodulation basis for intrafascicular artificial somatosensation through carbon nanotube yarn electrodes	58
State of the art imaging of neurotransmission in animal models	53
Abnormal EEG signal energy in the elderly: A wavelet analysis of event-related potentials during a stroop task	53
Imaging the endocannabinoid signaling system	51
Phase-amplitude coupling detection and analysis of human 2-dimensional neural cultures in multi-well microelectrode array in vitro	46
Deep learning models for atypical serotonergic cells recognition	44
µ-rhythm phase from somatosensory but not motor cortex correlates with corticospinal excitability in EEG-triggered TMS	43
Self-attention-based convolutional neural network and time-frequency common spatial pattern for enhanced motor imagery classification	43
Using a mixed-reality headset to elicit and track clinically relevant movement in the clinic	42
Long-term organotypic brain slices cultured on collagen-based microcontact prints: A perspective for a brain-on-a-chip	37
The larval diving response (LDR): Validation of an automated, high-throughput, ecologically relevant measure of anxiety-related behavior in larval zebrafish (Danio rerio)	37
Decoding fMRI data with support vector machines and deep neural networks	34
Editorial Board	33
IDyOMpy: A new Python-based model for the statistical analysis of musical expectations	31
Potential mechanism and efficacy evaluation of transcranial focused ultrasound therapy for Alzheimer's disease	31
A novel 5D brain parcellation approach based on spatio-temporal encoding of resting fMRI data from deep residual learning	30
Identification and functional comparison of primary astrocytes and microglia	30
Theoretical and methodological analysis of EEG based seizure detection and prediction: An exhaustive review	30
Disconnecting prefrontal cortical neurons from the ventral midline thalamus: Loss of specificity due to progressive neural toxicity of an AAV-Cre in the rat thalamus	30
A fisher linear discriminant analysis classifier fused with naïve Bayes for simultaneous detection in an asynchronous brain-computer interface	30
Evaluation of the deep learning-based detection of dopaminergic neurons in primary culture: A practical alternative to manual counting	29
Determining the atlas correspondence of Desikan-Killiany-Tourville and Glasser MMP1 atlases across magnetic field strengths	29

Proper reference selection and re-referencing to mitigate bias in single pulse electrical stimulation data	29
CircadiPy: An open-source toolkit for analyzing chronobiology time series	29
Two brains, one target: Design of a multi-level information fusion model based on dual-subject RSVP	28
A fast and efficient method for isolating and culturing enteric neural precursor cells from adult mouse colon	28
In a century from agitated cells to human organoids	27
Decoding Autism: Uncovering patterns in brain connectivity through sparsity analysis with rs-fMRI data	27
Editorial Board	27
Drawing time-density curve with Fiji/ImageJ: An alternative approach for parametric coding of cerebral digital subtraction angiography	26
A comparison of confocal and epifluorescence microscopy for quantification of RNAScope and immunohistochemistry fluorescent images	25
Wide field block face imaging using deep ultraviolet induced autofluorescence of the human brain	25
Longitudinal EEG-based assessment of neuroplasticity and adaptive responses to transcranial focused ultrasound stimulation	25
Recognizable rehabilitation movements of multiple unilateral upper limb: An fMRI study of motor execution and motor imagery	25
Validation of structure tensor analysis for orientation estimation in brain tissue microscopy	24
Electrophysiological and morphological characterization of single neurons in intact human brain organoids	22
How to study sleep apneas in mouse models of human pathology	22
TMS-EEG responses across the lifespan: Measurement, methods for characterisation and identified responses	22
A conditional GABAergic synaptic vesicle marker for Drosophila	22
TAAC - TMS Adaptable Auditory Control: A universal tool to mask TMS clicks	21
Full-field exposure of larval zebrafish to narrow waveband LED light sources at defined power and energy for optogenetic applications	21
Juggler’s ASR: Unpacking the principles of artifact subspace reconstruction for revision toward extreme MoBI	21
Molecular fMRI of neurochemical signaling	21
Mouse model of voluntary movement deficits induced by needlestick injuries to the primary motor cortex	20
A practical test for retronasal odor identification based on aromatized tablets	20
Neurorehabilitation strategies: Assessing the impact on postoperative psychological state, pain, and complications in trigeminal neuralgia	20
Continual cerebrospinal fluid sampling in the neonatal domestic piglet for biomarker and discovery studies	20
Adoption of deep learning-based magnetic resonance image information diagnosis in brain function network analysis of Parkinson’s disease patients with end-of-dose wearing-off	20
The 3D Vertical Maze: A new model system for studying the interactions between social and spatial cognition	20
Applying the area fraction fractionator (AFF) probe for total volume estimations of somatic, dendritic and axonal domains of the nigrostriatal dopaminergic system in a murine model	20
Unsupervised alignment in neuroscience: Introducing a toolbox for Gromov–Wasserstein optimal transport	20
Atraumatic access to human glioblastoma in a xenograft animal model by cerebral open flow microperfusion	19
Special issue on TMS-EEG methods, data analysis and processing	19
Editorial Board	19
Direct dorsal root ganglia (DRG) injection in mice for analysis of adeno-associated viral (AAV) gene transfer to peripheral somatosensory neurons	19
A new protocol for the development of organoids based on molecular mechanisms in the developing newborn rat brain: Prospective applications in the study of Alzheimer’s disease	18
Reconstruction of natural images from human fMRI using a three-stage multi-level deep fusion model	18
Analysis of modulations of mental fatigue on intra-individual variability from single-trial event related potentials	18
Investigation into the influence of stimulation area and coil orientation on the results of navigated transcranial magnetic stimulation (nTMS) mapping of lower limb intracortical excitability	17
LANMAO sleep recorder versus polysomnography in neonatal EEG recording and sleep analysis	17
Electrode configurations for sensitive and specific detection of compound muscle action potentials to the tibialis anterior muscle after peroneal nerve injury in rats	17
A novel method for sparse dynamic functional connectivity analysis from resting-state fMRI	17
Editorial Board	17
Multi-view graph fusion of self-weighted EEG feature representations for speech imagery decoding	16
Visiomode: An open-source platform for building rodent touchscreen-based behavioral assays	16
Real-time estimation of perceptual thresholds based on the electroencephalogram using a deep neural network	16
Primary culture of inner ear schwannoma	16
AutoRG: An automatized reach-to-grasp platform technology for assessing forelimb motor function, neural circuit activation, and cognition in rodents	16
Selective isolation of mouse glial nuclei optimized for reliable downstream omics analyses	16
A 120-target brain-computer interface based on code-modulated visual evoked potentials	16
Comparative evaluation of cerebral tissue pretreatment strategies for metabolomics using UHPLC-high-resolution mass spectrometry	16
Measuring spatial visual loss in rats by retinotopic mapping of the superior colliculus using a novel multi-electrode array technique	16

Automated lever task with minimum antigravity movement for rats with cervical spinal cord injury	15
Cross prior Bayesian attention with correlated inception and residual learning for brain tumor classification using MR images (CB-CIRL Net)	15
Editorial Board	15
A novel rat model of cerebral small vessel disease and evaluation by super-resolution ultrasound imaging	15
Enhancing therapeutic efficacy of fingolimod via intranasal delivery in an ethidium bromide-induced model of multiple sclerosis	15
Characterization of the echo-time dependence of spin-echo BOLD fMRI at 3 Tesla in grey and white matter	15
A novel approach of brain-computer interfacing (BCI) and Grad-CAM based explainable artificial intelligence: Use case scenario for smart healthcare	15
Imaging mitochondrial calcium dynamics in the central nervous system	14
An electrode-impedance-aware neurostimulator IC that achieves low-power consumption and fast charge balance	14
biPACT: A method for three-dimensional visualization of mouse spinal cord circuits of long segments with high resolution	14
Membrane-coated glass electrodes for stable, low-noise electrophysiology recordings in Drosophila central neurons	14
Chronic brain functional ultrasound imaging in freely moving rodents performing cognitive tasks	14
Behavioral phenotyping based on physical inactivity can predict sleep in female rats before, during, and after sleep disruption	14
Systematic development of immunohistochemistry protocol for large cryosections-specific to non-perfused fetal brain	14
Two phases of macrophages: Inducing maturation and death of oligodendrocytes in vitro co-culture	14
Effects of inter-stimulus intervals on concurrent P300 and SSVEP features for hybrid brain-computer interfaces	14
Activity‐State Entropy: A novel brain entropy measure based on spatial patterns of activity	14
A novel thermoelectric device integrated with a psychophysical paradigm to study pain processing in human subjects	14
Detection of eye movements and eye blinks using a portable two-channel EEG platform	14
A new approach to symmetric registration of longitudinal structural MRI of the human brain	13
A miniature kinematic coupling device for mouse head fixation	13
Generation and validation of a D1 dopamine receptor Flpo knock-in mouse	13
Improving the accuracy of decoding monkey brain–machine interface data by estimating the state of unobserved cell assemblies	13
An autonomous hybrid brain-computer interface system combined with eye-tracking in virtual environment	13
Pupillometry is sensitive to speech masking during story listening: A commentary on the critical role of modeling temporal trends	13
A method for the selective depletion of microglia in the dorsal hippocampus in the juvenile rat brain	13
Training the spatially-coded SSVEP BCI on the fly	13
Towards the automated detection of interictal epileptiform discharges with magnetoencephalography	13
Retraction notice to “Lightweight attention mechanisms for EEG emotion recognition for brain computer interface”	12
Closed-loop phase-targeted stimulation during sleep: Open-source benchmarking of methods and a novel algorithm for the epileptic brain	12
The superiority verification of morphological features in the EEG-based assessment of depression	12
A chinrest-based approach to measure eye movements and experimental task engagement in macaques with minimal restraint	12
Optimization of permeabilized brain tissue preparation to improve the analysis of mitochondrial oxidative capacities in specific subregions of the rat brain	12
Brain MRIs classification based on 2D SWD-MF-DFA	12
A comparative study between a power and a connectivity sEEG biomarker for seizure-onset zone identification in temporal lobe epilepsy	12
Integrated Short-TE and Hadamard-edited Multi-Sequence (ISTHMUS) for advanced MRS	12
Exploring the light/dark box test: Protocols and implications for neuroscience research	12
Exploring persistence in animal models: The sinking platform test	12
Assessing the impact of transcranial electrical stimulation on intracranial and cerebral perfusion pressures in patients with severe craniocerebral injury: A novel methodological approach	12
Dementia rhythms: Unveiling the EEG dynamics for MCI detection through spectral and synchrony neuromarkers	12
Detectability and accuracy of computational measurements of in-silico and physical representations of enlarged perivascular spaces from magnetic resonance images	12
Multi-scale self-attention approach for analysing motor imagery signals in brain-computer interfaces	12
RETRACTED: Lightweight attention mechanisms for EEG emotion recognition for brain computer interface	12
Estimation of complete mutual information exploiting nonlinear magnitude-phase dependence: Application to spatial FNC for complex-valued fMRI data	12
Microelectrode clusters enable therapeutic deep brain stimulation without noticeable side-effects in a rodent model of Parkinson’s disease	12
Editorial Board	11
Correlating brain arteriovenous malformations location with clinical and angio-architectural characteristics: A voxel-based lesion symptom mapping approach	11
Editorial Board	11
Method of long-term, recurrent, intracerebroventricular infusion of cellular therapy in mice	11
Spatial nonstationarity of image noise in widefield optical imaging and its effects on cluster-based inference for resting-state functional connectivity	11
Low-quality training data detection method of EEG signals for motor imagery BCI system	11
Addressing the elephant in the T-maze: Developing experimental conduct guidelines for neuroscience	11
Dynamic functional network connectivity based on spatial source phase maps of complex-valued fMRI data: Application to schizophrenia	11
A Weighted Head Accelerator Mechanism (WHAM) for visualizing brain rheology using magnetic resonance imaging	11
A new patterned air-flow device to reveal the network for tactile motion coding using fMRI	11
Automating behavioral analysis in neuroscience: Development of an open-source python software for more consistent and reliable results	11
Editorial Board	11
SIFIAE: An adaptive emotion recognition model with EEG feature-label inconsistency consideration	10
Adaptations to the neuronal culture for researchers at undergraduate institutions	10
A review of critical challenges in MI-BCI: From conventional to deep learning methods	10
Simultaneous isolation of intact brain cells and cell-specific extracellular vesicles from cryopreserved Alzheimer’s disease cortex	10
Cognitive driven gait freezing phase detection and classification for neuro-rehabilitated patients using machine learning algorithms	10
Brain-computer interfaces inspired spiking neural network model for depression stage identification	10
Establishing In-vivo brain microdialysis for comparing concentrations of a variety of cortical neurotransmitters in the awake rhesus macaque between different cognitive states	10
Human spinal cord microglia/macrophages culture: Accutase digestion and non-enzymatic purification	10
Three-dimensional imaging and computational quantitation as a novel approach to assess nerve fibers, enteric glial cells, mast cells, and the proximity of mast cells to the nerve fibers in human sigmo	10
Spatio-Spectral CCA (SS-CCA): A novel approach for frequency recognition in SSVEP-based BCI	10
Influence of threshold selection and image sequence in in-vivo segmentation of enlarged perivascular spaces	10
Aseptic, semi-sealed cranial chamber implants for chronic multi-channel neurochemical and electrophysiological neural recording in nonhuman primates	10
Ramp protocol for non-linear cerebrovascular reactivity with transcranial doppler ultrasound	9
Rats chasing the dragon: A new heroin inhalation method	9
Editorial Board	9
Robust high spatio-temporal line-scanning fMRI in humans at 7T using multi-echo readouts, denoising and prospective motion correction	9
Convolutional Neural Networks for the segmentation of hippocampal structures in postmortem MRI scans	9
CluSem: Accurate clustering-based ensemble method to predict motor imagery tasks from multi-channel EEG data	9
Investigating dynamic causal network with unified Granger causality analysis	9
Development of a 3D-immunofluorescence analysis for sensory nerve endings in human ligaments	9
A novel ANN-based classification of spike-wave activity in 24-hour EEG recordings in rats using spectrograms: Spike-Wave Discharge Artificial Neural Network (SWAN)	9
Intra-rater reliability and validity of neuro-mobinavigation: A mobile app and laser-guided system of motor HotSpot localization	9
Identification and verification of a 'true' TMS evoked potential in TMS-EEG	9

Assessing the nature of premature responses in the rodent continuous performance test variable intertrial interval schedule using atomoxetine and amphetamine	9
A comparison of lesion-overlap approaches to quantify corticospinal tract involvement in chronic stroke	9
CLARITY in Alzheimer’s Research: Merging Tissue Transparency with Next-Gen Neurotechnologies	9
Quantifying GFAP immunohistochemistry in the brain – Introduction of the Reactivity score (R-score) and how it compares to other methodologies	9
Ultrasound biomicroscopy in the quantification of brain perfusion parameters of a rat stroke model: Analysis of contrast agent bolus kinetic dynamics	8
Editorial Board	8
Editorial Board	8
Editorial Board	8
Implementation of the neuro-glia-vascular unit through co-culture of adult neural stem cells and vascular cells and transcriptomic analysis of diverse Aβ assembly types	8
A method to study human synaptic protein-protein interactions by using flow cytometry coupled to proximity ligation assay (Syn-FlowPLA)	8
Cortical stimulation depth of nTMS investigated in a cohort of convexity meningiomas above the primary motor cortex	8
WS-BiTM: Integrating White Shark Optimization with Bi-LSTM for enhanced autism spectrum disorder diagnosis	8
A novel method of neurophysiological brainstem mapping in neurosurgery	8
Spatial localization in target detection based on decoding N2pc component	8
A method for estimating and characterizing explicitly nonlinear dynamic functional network connectivity in resting-state fMRI data	8
Transcranial magnetic stimulation-based neuroplasticity in the treatment of amblyopia	8
Virtual histology of an entire mouse brain from formalin fixation to paraffin embedding. Part 2: Volumetric strain fields and local contrast changes	8
Editorial Board	8
Removing nonlinear misalignment in neuronal spike trains using the Fisher-Rao registration framework	8
Comparison of methods for the preparation of single-cell suspensions of rat retina and immunophenotyping by flow cytometry	8
The impact of temporal synchronisation imprecision on TRF analyses	8
Imaging and analysis of neuronal mitochondria in murine acute brain slices	8
Classification of EEG signals: An interpretable approach using functional data analysis	8
Functional connectomes incorporating phase synchronization for the characterization and prediction of individual differences	8
Integrating neuroscience and artificial intelligence: EEG analysis using ensemble learning for diagnosis Alzheimer’s disease and frontotemporal dementia	7
Mapping and quantifying neuropeptides in the enteric nervous system	7
The use of integrated behavioural z-scoring in behavioural neuroscience – A perspective article	7
A new waveform analysis method reflecting the diversity of F-wave Waveforms–Waveform types in healthy subjects based on the combined use of the additive averaging method and histograms-	7
Editorial Board	7
Functional MRI study with conductivity signal changes during visual stimulation	7
FB-EEGNet: A fusion neural network across multi-stimulus for SSVEP target detection	7
Standardization of a silver stain to reveal mesoscale myelin in histological preparations of the mammalian brain	7
Food preference assay in male and female C57BL/6 mice	7
Differences in conduction velocities of nerve fibers excited by infrared and electrical stimulation	7
A refined Golgi-Cox method for the staining of embryonic neurons in the mouse brain	7
Dorsal myelotomy in E15–E16 fetal rat: A promising paradigm in regeneration research, with serendipitous transcriptomic effects on development, of the primary afferent system	7
Effective R2 relaxation rate, derived from dual-contrast fast-spin-echo MRI, enables detection of hemisphere differences in iron level and dopamine function in Parkinson’s disease and healthy individu	7
Decoding olfactory EEG signals for different odor stimuli identification using wavelet-spatial domain feature	7
A review on Alzheimer’s disease classification from normal controls and mild cognitive impairment using structural MR images	7
Comparative analysis of spectral and temporal combinations in CSP-based methods for decoding hand motor imagery tasks	7
A machine learning approach to identify stochastic resonance in human perceptual thresholds	7
Proliferation of SH-SY5Y neuroblastoma cells on confined spaces	7
Guidelines for animal models of endurance and resistance exercise	7
μGlia-Flow, an automatic workflow for microglia segmentation and classification	7
Analytic consistency and neural correlates of peak alpha frequency in the study of pain	7
Editorial Board	7
Quantification of early gait development: Expanding the application of Catwalk technology to an infant rhesus macaque model	7
Facile method to incorporate high-affinity ACAT/SOAT1 inhibitor F12511 into stealth liposome-based nanoparticle and demonstration of its efficacy in blocking cholesteryl ester biosynthesis without ove	7
Toolkit for Oscillatory Real-time Tracking and Estimation (TORTE)	7
Measuring the replicability of our own research	7
Commentary on “Cortical stimulation depth of nTMS investigated in a cohort of convexity meningiomas above the primary motor cortex”	7
Development of a monoclonal antibody specific for a calpain-generated ∆48 kDa calcineurin fragment, a marker of distressed astrocytes	6
Machine learning applications on neuroimaging for diagnosis and prognosis of epilepsy: A review	6
Use of metal-based contrast agents for in vivo MR and CT imaging of phagocytic cells in neurological pathologies	6
A radiofrequency coil to facilitate task-based fMRI of awake marmosets	6
Human organotypic brain slice cultures: a detailed and improved protocol for preparation and long-term maintenance	6
DSE-Mixer: A pure multilayer perceptron network for emotion recognition from EEG feature maps	6
Editorial Board	6
Spectrum dependency to rate and spike timing in neuronal spike trains	6
Assessment of voluntary drug and alcohol intake in Drosophila melanogaster using a modified one-tube capillary feeding assay	6
Editorial Board	6
Single-trial-based temporal principal component analysis on extracting event-related potentials of interest for an individual subject	6
Evaluating the efficacy of non-invasive brain stimulation techniques in managing pediatric epilepsy	6
Brain tumor segmentation with deep learning: Current approaches and future perspectives	6
Median amplitude and frequency analysis of sensory nerve responses to intraepidermal stimulation	6
A multiscale siamese convolutional neural network with cross-channel fusion for motor imagery decoding	6
Correlative nano-imaging of metals and proteins in primary neurons by synchrotron X-ray fluorescence and STED super resolution microscopy: Experimental validation	6
Computer-controlled electrical stimulation of facial muscles by facial neuromuscular electrical stimulation (fNMES): Hardware and software solutions	6
An updated Barnes maze protocol for assessing the outcome of controlled cortical impact mouse models of traumatic brain injury	6
A cranial implant for stabilizing whole-cell patch-clamp recordings in behaving rodents	6
CT myelography by intrathecal injection of contrast medium though percutaneous administration route visualizes compressed cervical spinal cord in a mouse	6
A method for constructing a mouse model of congenital hearing loss by bilateral cochlear ablation	6
Corrigendum to “An MRI protocol for anatomical and functional evaluation of the California sea lion brain” [J. Neurosci. Methods 353 (2021) 109097]	6
Periodicity-based multi-dimensional interaction convolution network with multi-scale feature fusion for motor imagery EEG classification	6
Aptamer-based enrichment of TDP-43 from human cells and tissues with quantification by HPLC-MS/MS	6
Isolation, culture, and characterization of primary endothelial cells and pericytes from mouse sciatic nerve	6
Assessment of neural function recovery in premature infants at high risk of brain injury using amplitude integrated electroencephalography and GMs scales	6
fMRI-Informed EEG for brain mapping of imagined lower limb movement: Feasibility of a brain computer interface	6
Reconfiguration of cortical brain network from searching to spotting for dynamic visual targets	6
A new gradient-based method for analyzing brain white matter fiber geometry	6
Holo-Hilbert spectral-based noise removal method for EEG high-frequency bands	6
Activation of primate frontal eye fields with a CMUT phased array system	6
STSimM: A new tool for evaluating neuron model performance and detecting spike trains similarity	6
Automated system for training and assessing reaching and grasping behaviors in rodents	6
Multi-day recordings and adaptive stimulation protocols for in-home collection of deep brain stimulation intracranial recordings	6
Voxeloc: A time-saving graphical user interface for localizing and visualizing stereo-EEG electrodes	6
An open-source MRI compatible frame for multimodal presurgical mapping in macaque and capuchin monkeys	5
The “Twin Peaks” method of automated Spike-Wave detection: A two-step, two-criteria Matlab application	5
Using effective connectivity-based predictive modeling to predict MDD scale scores from multisite rs-fMRI data	5
Editorial Board	5
Concurrent spinal and brain imaging with optically pumped magnetometers	5
Biocompatibility and customizability: Expanding possibilities with 3D printed guide cannulas	5
Prediction of gender from longitudinal MRI data via deep learning on adolescent data reveals unique patterns associated with brain structure and change over a two-year period	5
Non-invasive electroencephalography in awake cats: Feasibility and application to sensory processing in chronic pain	5
A reliable and efficient adaptive Bayesian method to assess static lower limb position sense	5