Journal of Neuroscience Methods

Article	Citations
A simple metric to study the mechanisms generating event-related potentials	98
Comparison of corticospinal tract integrity measures extracted from standard versus native space in chronic stroke	94
Seed-based dual regression: An illustration of the impact of dual regression's inherent filtering of global signal	92
Long-term organotypic brain slices cultured on collagen-based microcontact prints: A perspective for a brain-on-a-chip	75
IDyOMpy: A new Python-based model for the statistical analysis of musical expectations	75
Decoding fMRI data with support vector machines and deep neural networks	53
µ-rhythm phase from somatosensory but not motor cortex correlates with corticospinal excitability in EEG-triggered TMS	52
State of the art imaging of neurotransmission in animal models	49
Identification and functional comparison of primary astrocytes and microglia	49
Deep learning models for atypical serotonergic cells recognition	47
A novel 5D brain parcellation approach based on spatio-temporal encoding of resting fMRI data from deep residual learning	44
Editorial Board	41
Potential mechanism and efficacy evaluation of transcranial focused ultrasound therapy for Alzheimer's disease	41
Mapping dependencies of BOLD signal change to end-tidal CO2: Linear and nonlinear modeling, and effect of physiological noise correction	40
Self-attention-based convolutional neural network and time-frequency common spatial pattern for enhanced motor imagery classification	39
Phase-amplitude coupling detection and analysis of human 2-dimensional neural cultures in multi-well microelectrode array in vitro	38
Abnormal EEG signal energy in the elderly: A wavelet analysis of event-related potentials during a stroop task	37
Objective neuromodulation basis for intrafascicular artificial somatosensation through carbon nanotube yarn electrodes	35
Theoretical and methodological analysis of EEG based seizure detection and prediction: An exhaustive review	34
The larval diving response (LDR): Validation of an automated, high-throughput, ecologically relevant measure of anxiety-related behavior in larval zebrafish (Danio rerio)	34
A fisher linear discriminant analysis classifier fused with naïve Bayes for simultaneous detection in an asynchronous brain-computer interface	33
Disconnecting prefrontal cortical neurons from the ventral midline thalamus: Loss of specificity due to progressive neural toxicity of an AAV-Cre in the rat thalamus	32
Improving suction technology for nerve activity recording	31
Using a mixed-reality headset to elicit and track clinically relevant movement in the clinic	31
EEG Analyses of visual cue effects on executed movements	29

Imaging the endocannabinoid signaling system	29
Editorial Board	29
Wide field block face imaging using deep ultraviolet induced autofluorescence of the human brain	28
A fast and efficient method for isolating and culturing enteric neural precursor cells from adult mouse colon	28
Two brains, one target: Design of a multi-level information fusion model based on dual-subject RSVP	27
Molecular fMRI of neurochemical signaling	27
Determining the atlas correspondence of Desikan-Killiany-Tourville and Glasser MMP1 atlases across magnetic field strengths	27
A comparison of confocal and epifluorescence microscopy for quantification of RNAScope and immunohistochemistry fluorescent images	27
TMS-EEG responses across the lifespan: Measurement, methods for characterisation and identified responses	26
A conditional GABAergic synaptic vesicle marker for Drosophila	26
How to study sleep apneas in mouse models of human pathology	26
In a century from agitated cells to human organoids	26
Electrophysiological and morphological characterization of single neurons in intact human brain organoids	25
Drawing time-density curve with Fiji/ImageJ: An alternative approach for parametric coding of cerebral digital subtraction angiography	25
Full-field exposure of larval zebrafish to narrow waveband LED light sources at defined power and energy for optogenetic applications	25
TAAC - TMS Adaptable Auditory Control: A universal tool to mask TMS clicks	24
CircadiPy: An open-source toolkit for analyzing chronobiology time series	23
Longitudinal EEG-Based Assessment of Neuroplasticity and Adaptive Responses to Transcranial Focused Ultrasound Stimulation	23
Proper reference selection and re-referencing to mitigate bias in single pulse electrical stimulation data	22
Recognizable rehabilitation movements of multiple unilateral upper limb: An fMRI study of motor execution and motor imagery	22
Atraumatic access to human glioblastoma in a xenograft animal model by cerebral open flow microperfusion	21
A novel tool for the removal of muscle artefacts from EEG: Improving data quality in the gamma frequency range	21
Special issue on TMS-EEG methods, data analysis and processing	21
The 3D Vertical Maze: A new model system for studying the interactions between social and spatial cognition	21
Decoding Autism: Uncovering patterns in brain connectivity through sparsity analysis with rs-fMRI data	21
Continual cerebrospinal fluid sampling in the neonatal domestic piglet for biomarker and discovery studies	20
Reconstruction of natural images from human fMRI using a three-stage multi-level deep fusion model	20
Direct dorsal root ganglia (DRG) injection in mice for analysis of adeno-associated viral (AAV) gene transfer to peripheral somatosensory neurons	20
Neurorehabilitation strategies: Assessing the impact on postoperative psychological state, pain, and complications in trigeminal neuralgia	20
Editorial Board	20
Mouse model of voluntary movement deficits induced by needlestick injuries to the primary motor cortex	19
LANMAO sleep recorder versus polysomnography in neonatal EEG recording and sleep analysis	19
A new protocol for the development of organoids based on molecular mechanisms in the developing newborn rat brain: Prospective applications in the study of Alzheimer’s disease	19
Adoption of deep learning-based magnetic resonance image information diagnosis in brain function network analysis of Parkinson’s disease patients with end-of-dose wearing-off	19
Unsupervised alignment in neuroscience: Introducing a toolbox for Gromov–Wasserstein optimal transport	19
Applying the area fraction fractionator (AFF) probe for total volume estimations of somatic, dendritic and axonal domains of the nigrostriatal dopaminergic system in a murine model	19
Analysis of modulations of mental fatigue on intra-individual variability from single-trial event related potentials	19
Cross prior Bayesian attention with correlated inception and residual learning for brain tumor classification using MR images (CB-CIRL Net)	18
A novel approach of brain-computer interfacing (BCI) and Grad-CAM based explainable artificial intelligence: Use case scenario for smart healthcare	18
Effects of inter-stimulus intervals on concurrent P300 and SSVEP features for hybrid brain-computer interfaces	18
A novel rat model of cerebral small vessel disease and evaluation by super-resolution ultrasound imaging	18
A practical test for retronasal odor identification based on aromatized tablets	18
Editorial Board	18
Editorial Board	18
A novel method for sparse dynamic functional connectivity analysis from resting-state fMRI	17
Real-time estimation of perceptual thresholds based on the electroencephalogram using a deep neural network	17
Multi-view iterative random walker for automated salvageable tissue delineation in ischemic stroke from multi-sequence MRI	17
Characterization of neuronal viability and network activity under microfluidic flow	17
Two phases of macrophages: Inducing maturation and death of oligodendrocytes in vitro co-culture	17
Selective isolation of mouse glial nuclei optimized for reliable downstream omics analyses	17

Visiomode: An open-source platform for building rodent touchscreen-based behavioral assays	17
Automated lever task with minimum antigravity movement for rats with cervical spinal cord injury	17
Multi-view graph fusion of self-weighted EEG feature representations for speech imagery decoding	16
Characterization of the echo-time dependence of spin-echo BOLD fMRI at 3 Tesla in grey and white matter	16
Behavioral phenotyping based on physical inactivity can predict sleep in female rats before, during, and after sleep disruption	16
Electrode configurations for sensitive and specific detection of compound muscle action potentials to the tibialis anterior muscle after peroneal nerve injury in rats	16
Enhancing therapeutic efficacy of fingolimod via intranasal delivery in an ethidium bromide-induced model of multiple sclerosis	15
Membrane-coated glass electrodes for stable, low-noise electrophysiology recordings in Drosophila central neurons	15
AutoRG: An automatized reach-to-grasp platform technology for assessing forelimb motor function, neural circuit activation, and cognition in rodents	15
Dynamic theta/beta ratio of clinical EEG in Alzheimer's disease	15
Measuring spatial visual loss in rats by retinotopic mapping of the superior colliculus using a novel multi-electrode array technique	15
A 3D cell culture approach for studying neuroinflammation	15
biPACT: A method for three-dimensional visualization of mouse spinal cord circuits of long segments with high resolution	14
The superiority verification of morphological features in the EEG-based assessment of depression	14
Microelectrode clusters enable therapeutic deep brain stimulation without noticeable side-effects in a rodent model of Parkinson’s disease	14
A method for the selective depletion of microglia in the dorsal hippocampus in the juvenile rat brain	14
Systematic development of immunohistochemistry protocol for large cryosections-specific to non-perfused fetal brain	14
A 120-target brain-computer interface based on code-modulated visual evoked potentials	14
A low-cost mouse cage warming system provides improved intra-ischemic and post-ischemic body temperature control – Application for reducing variability in experimental stroke studies	14
Chronic brain functional ultrasound imaging in freely moving rodents performing cognitive tasks	14
Avian adeno-associated virus as an anterograde transsynaptic vector	14
Training the spatially-coded SSVEP BCI on the fly	14
Improving the accuracy of decoding monkey brain–machine interface data by estimating the state of unobserved cell assemblies	14
Dementia rhythms: Unveiling the EEG dynamics for MCI detection through spectral and synchrony neuromarkers	14
Computational framework for investigating predictive processing in auditory perception	13
A miniature kinematic coupling device for mouse head fixation	13
Activity‐State Entropy: A novel brain entropy measure based on spatial patterns of activity	13
A novel thermoelectric device integrated with a psychophysical paradigm to study pain processing in human subjects	13
Convolutional neural networks ensemble model for neonatal seizure detection	13
Retraction notice to “Lightweight attention mechanisms for EEG emotion recognition for brain computer interface”	13
A comparative study between a power and a connectivity sEEG biomarker for seizure-onset zone identification in temporal lobe epilepsy	13
A chinrest-based approach to measure eye movements and experimental task engagement in macaques with minimal restraint	13
Eavesdropping wires: Recording activity in axons using genetically encoded calcium indicators	13
Integrated Short-TE and Hadamard-edited Multi-Sequence (ISTHMUS) for advanced MRS	13
Pupillometry is sensitive to speech masking during story listening: A commentary on the critical role of modeling temporal trends	12
RETRACTED: Lightweight attention mechanisms for EEG emotion recognition for brain computer interface	12
Detectability and accuracy of computational measurements of in-silico and physical representations of enlarged perivascular spaces from magnetic resonance images	12
Addressing the elephant in the T-maze: Developing experimental conduct guidelines for neuroscience	12
Towards the automated detection of interictal epileptiform discharges with magnetoencephalography	12
Imaging mitochondrial calcium dynamics in the central nervous system	12
A new approach to symmetric registration of longitudinal structural MRI of the human brain	12
Exploring the light/dark box test: Protocols and implications for neuroscience research	12
Editorial Board	12
Establishing In-vivo brain microdialysis for comparing concentrations of a variety of cortical neurotransmitters in the awake rhesus macaque between different cognitive states	12
An autonomous hybrid brain-computer interface system combined with eye-tracking in virtual environment	12
Generation and validation of a D1 dopamine receptor Flpo knock-in mouse	12
Multi-scale self-attention approach for analysing motor imagery signals in brain-computer interfaces	12
Editorial Board	12
An electrode-impedance-aware neurostimulator IC that achieves low-power consumption and fast charge balance	12
Non-stimulus-evoked activity as a measure of neural noise in the frequency-following response	11
Spatial nonstationarity of image noise in widefield optical imaging and its effects on cluster-based inference for resting-state functional connectivity	11
Brain-computer interfaces inspired spiking neural network model for depression stage identification	11
Editorial Board	11
Automating behavioral analysis in neuroscience: Development of an open-source python software for more consistent and reliable results	11
Low-quality training data detection method of EEG signals for motor imagery BCI system	11
Exploring persistence in animal models: The sinking platform test	11
Method of long-term, recurrent, intracerebroventricular infusion of cellular therapy in mice	11
A Weighted Head Accelerator Mechanism (WHAM) for visualizing brain rheology using magnetic resonance imaging	11
Cognitive driven gait freezing phase detection and classification for neuro-rehabilitated patients using machine learning algorithms	11
Influence of threshold selection and image sequence in in-vivo segmentation of enlarged perivascular spaces	10
Simultaneous isolation of intact brain cells and cell-specific extracellular vesicles from cryopreserved Alzheimer’s disease cortex	10
Estimation of complete mutual information exploiting nonlinear magnitude-phase dependence: Application to spatial FNC for complex-valued fMRI data	10
SIFIAE: An adaptive emotion recognition model with EEG feature-label inconsistency consideration	10
A subgaleal electrode array for neurostimulation allows the recording of relevant information in closed loop applications	10
Let's get wild: A review of free-ranging rat assays as context-enriched supplements to traditional laboratory models	10
Quantifying GFAP immunohistochemistry in the brain – Introduction of the Reactivity score (R-score) and how it compares to other methodologies	10
Optimization of permeabilized brain tissue preparation to improve the analysis of mitochondrial oxidative capacities in specific subregions of the rat brain	10
Three-dimensional imaging and computational quantitation as a novel approach to assess nerve fibers, enteric glial cells, mast cells, and the proximity of mast cells to the nerve fibers in human sigmo	10
A new patterned air-flow device to reveal the network for tactile motion coding using fMRI	10
Quantification of relative neurite tortuosity using Fourier transforms	10
A review of critical challenges in MI-BCI: From conventional to deep learning methods	10
Spatio-Spectral CCA (SS-CCA): A novel approach for frequency recognition in SSVEP-based BCI	10
Adaptations to the neuronal culture for researchers at undergraduate institutions	10
Dynamic functional network connectivity based on spatial source phase maps of complex-valued fMRI data: Application to schizophrenia	10
Robust high spatio-temporal line-scanning fMRI in humans at 7T using multi-echo readouts, denoising and prospective motion correction	10
Automated segmentation of choroidal layers from 3-dimensional macular optical coherence tomography scans	10
A comparison of lesion-overlap approaches to quantify corticospinal tract involvement in chronic stroke	9
Rats chasing the dragon: A new heroin inhalation method	9
Animal studies in clinical MRI scanners: A custom setup for combined fMRI and deep-brain stimulation in awake rats	9
Editorial Board	9

Removing nonlinear misalignment in neuronal spike trains using the Fisher-Rao registration framework	9
Ultrasound biomicroscopy in the quantification of brain perfusion parameters of a rat stroke model: Analysis of contrast agent bolus kinetic dynamics	9
Assessing the nature of premature responses in the rodent continuous performance test variable intertrial interval schedule using atomoxetine and amphetamine	9
Editorial Board	9
Virtual histology of an entire mouse brain from formalin fixation to paraffin embedding. Part 2: Volumetric strain fields and local contrast changes	9
Development of a 3D-immunofluorescence analysis for sensory nerve endings in human ligaments	9
A method to study human synaptic protein-protein interactions by using flow cytometry coupled to proximity ligation assay (Syn-FlowPLA)	9
Editorial Board	9
Convolutional Neural Networks for the segmentation of hippocampal structures in postmortem MRI scans	9
Investigating dynamic causal network with unified Granger causality analysis	9
Implementation of the neuro-glia-vascular unit through co-culture of adult neural stem cells and vascular cells and transcriptomic analysis of diverse Aβ assembly types	8
Transcranial magnetic stimulation-based neuroplasticity in the treatment of amblyopia	8
Intra-rater reliability and validity of neuro-mobinavigation: A mobile app and laser-guided system of motor HotSpot localization	8
Detection of movement related cortical potentials in freehand drawing on digital tablet	8
Editorial Board	8
Mapping and quantifying neuropeptides in the enteric nervous system	8
A novel 3D-printed multi-driven system for large-scale neurophysiological recordings in multiple brain regions	8
WS-BiTM: Integrating White Shark Optimization with Bi-LSTM for enhanced autism spectrum disorder diagnosis	8
Measuring the replicability of our own research	8
Editorial Board	8
Ramp protocol for non-linear cerebrovascular reactivity with transcranial doppler ultrasound	8
Functional connectomes incorporating phase synchronization for the characterization and prediction of individual differences	8
Differences in conduction velocities of nerve fibers excited by infrared and electrical stimulation	8
Imaging and analysis of neuronal mitochondria in murine acute brain slices	8
CluSem: Accurate clustering-based ensemble method to predict motor imagery tasks from multi-channel EEG data	8
Comparison of methods for the preparation of single-cell suspensions of rat retina and immunophenotyping by flow cytometry	8
Identification and verification of a 'true' TMS evoked potential in TMS-EEG	8
Simultaneous flow cytometric characterization of multiple cell types and metabolic states in the rat brain after repeated mild traumatic brain injury	8
A novel method of neurophysiological brainstem mapping in neurosurgery	8
Classification of EEG signals: An interpretable approach using functional data analysis	8
Multiscale modeling and analytical methods in neuroscience: Molecules, neural circuits, cognition and brain disorders	8
A refined Golgi-Cox method for the staining of embryonic neurons in the mouse brain	8
Effective R2 relaxation rate, derived from dual-contrast fast-spin-echo MRI, enables detection of hemisphere differences in iron level and dopamine function in Parkinson’s disease and healthy individu	8
A machine learning approach to identify stochastic resonance in human perceptual thresholds	8
Toolkit for Oscillatory Real-time Tracking and Estimation (TORTE)	7
Standardization of a silver stain to reveal mesoscale myelin in histological preparations of the mammalian brain	7
Disjoint subspaces for common and distinct component analysis: Application to the fusion of multi-task FMRI data	7
Cortical stimulation depth of nTMS investigated in a cohort of convexity meningiomas above the primary motor cortex	7
Analytic consistency and neural correlates of peak alpha frequency in the study of pain	7
Assessment of neural function recovery in premature infants at high risk of brain injury using amplitude integrated electroencephalography and GMs scales	7
Editorial Board	7
A method for estimating and characterizing explicitly nonlinear dynamic functional network connectivity in resting-state fMRI data	7
The impact of temporal synchronisation imprecision on TRF analyses	7
FB-EEGNet: A fusion neural network across multi-stimulus for SSVEP target detection	7
A review on Alzheimer’s disease classification from normal controls and mild cognitive impairment using structural MR images	7
Integrating neuroscience and artificial intelligence: EEG analysis using ensemble learning for diagnosis Alzheimer’s disease and frontotemporal dementia	7
Spatial localization in target detection based on decoding N2pc component	7
Aptamer-based enrichment of TDP-43 from human cells and tissues with quantification by HPLC-MS/MS	7
Editorial Board	7
Editorial Board	7
Comparative analysis of spectral and temporal combinations in CSP-based methods for decoding hand motor imagery tasks	7
Commentary on “Cortical stimulation depth of nTMS investigated in a cohort of convexity meningiomas above the primary motor cortex”	7
μGlia-Flow, an automatic workflow for microglia segmentation and classification	7
The use of integrated behavioural z-scoring in behavioural neuroscience – A perspective article	7
Guidelines for animal models of endurance and resistance exercise	7
Proliferation of SH-SY5Y neuroblastoma cells on confined spaces	7
Food preference assay in male and female C57BL/6 mice	7
Dorsal myelotomy in E15–E16 fetal rat: A promising paradigm in regeneration research, with serendipitous transcriptomic effects on development, of the primary afferent system	7
Genetically encoded sensors towards imaging cAMP and PKA activity in vivo	7
Functional MRI study with conductivity signal changes during visual stimulation	7
Reconfiguration of cortical brain network from searching to spotting for dynamic visual targets	6
Single-trial-based temporal principal component analysis on extracting event-related potentials of interest for an individual subject	6
Isolation, culture, and characterization of primary endothelial cells and pericytes from mouse sciatic nerve	6
A new waveform analysis method reflecting the diversity of F-wave Waveforms–Waveform types in healthy subjects based on the combined use of the additive averaging method and histograms-	6
Brain tumor segmentation with deep learning: Current approaches and future perspectives	6
Machine learning applications on neuroimaging for diagnosis and prognosis of epilepsy: A review	6
Morphological active contour model for automatic brain tumor extraction from multimodal magnetic resonance images	6
A method for constructing a mouse model of congenital hearing loss by bilateral cochlear ablation	6
Locomotion is impacted differently according to the perinatal brain injury model: Meta-analysis of preclinical studies with implications for cerebral palsy	6
CT myelography by intrathecal injection of contrast medium though percutaneous administration route visualizes compressed cervical spinal cord in a mouse	6
Editorial Board	6
Corrigendum to “An MRI protocol for anatomical and functional evaluation of the California sea lion brain” [J. Neurosci. Methods 353 (2021) 109097]	6
Decoding olfactory EEG signals for different odor stimuli identification using wavelet-spatial domain feature	6
Facile method to incorporate high-affinity ACAT/SOAT1 inhibitor F12511 into stealth liposome-based nanoparticle and demonstration of its efficacy in blocking cholesteryl ester biosynthesis without ove	6
A multiscale siamese convolutional neural network with cross-channel fusion for motor imagery decoding	6
An LC-APCI+-MS/MS-based method for determining the concentration of neurosteroids in the brain of male mice with different gut microbiota	6
Voxeloc: A time-saving graphical user interface for localizing and visualizing stereo-EEG electrodes	6
Editorial Board	6
Holo-Hilbert spectral-based noise removal method for EEG high-frequency bands	6
DSE-Mixer: A pure multilayer perceptron network for emotion recognition from EEG feature maps	6
Multi-day recordings and adaptive stimulation protocols for in-home collection of deep brain stimulation intracranial recordings	6
A cranial implant for stabilizing whole-cell patch-clamp recordings in behaving rodents	6
Computational approach to understand temporal and spatial tactile transmission processes from mechanical stimuli of the index fingertip to the primary somatosensory cortex	6
Evaluating the efficacy of non-invasive brain stimulation techniques in managing pediatric epilepsy	6
Development of a monoclonal antibody specific for a calpain-generated ∆48 kDa calcineurin fragment, a marker of distressed astrocytes	6
Quantification of early gait development: Expanding the application of Catwalk technology to an infant rhesus macaque model	6
Spectrum dependency to rate and spike timing in neuronal spike trains	6
Median amplitude and frequency analysis of sensory nerve responses to intraepidermal stimulation	6
Emotion-movement relationship: A study using functional brain network and cortico-muscular coupling	6
Activation of primate frontal eye fields with a CMUT phased array system	6
Assessment of voluntary drug and alcohol intake in Drosophila melanogaster using a modified one-tube capillary feeding assay	6