Journal of Microbiological Methods

Article	Citations
A fungal based synthesis method for copper nanoparticles with the determination of anticancer, antidiabetic and antibacterial activities	83
Eco-friendly green synthesis of clove buds extract functionalized silver nanoparticles and evaluation of antibacterial and antidiatom activity	55
Accurate MRSA identification through dual-functional aptamer and CRISPR-Cas12a assisted rolling circle amplification	54
Antibacterial-coated silk surgical sutures by ex situ deposition of silver nanoparticles synthesized with Eucalyptus camaldulensis eradicates infections	40
Respiratory bacterial co-infections in intensive care unit-hospitalized COVID-19 patients: Conventional culture vs BioFire FilmArray pneumonia Plus panel	34
Decolorization and phytotoxicity reduction of reactive blue 40 dye in real textile wastewater by active consortium: Anaerobic/aerobic algal-bacterial-probiotic bioreactor	31
A simple 18S rDNA approach for the identification of cultured eukaryotic microalgae with an emphasis on primers	29
Sequence-enabled community-based microbial source tracking in surface waters using machine learning classification: A review	29
Impact of swab material on microbial surface sampling	29
Phospholipid fatty acid (PLFA) analysis as a tool to estimate absolute abundances from compositional 16S rRNA bacterial metabarcoding data	28
Development and validation of a droplet digital PCR assay for the detection and quantification of Bartonella species within human clinical samples.	25
New insights in enumeration methodologies of probiotic cells in finished products	25
Influence of PCR cycle number on 16S rRNA gene amplicon sequencing of low biomass samples	23
Bacterial and fungal disinfection via ozonation in air	22
Comparison of simple and rapid cell wall disruption methods for improving lipid extraction from yeast cells	22
Hierarchical detection of diverse Clade II (atypical) nosZ genes using new primer sets for classical- and multiplex PCR array applications	21
A low pH-based rapid and direct colorimetric sensing of bacteria using unmodified gold nanoparticles	21
Colorimetric and label free detection of gelatinase positive bacteria and gelatinase activity based on aggregation and dissolution of gold nanoparticles	20
Twenty-first century molecular methods for analyzing antimicrobial resistance in surface waters to support One Health assessments	20
A fluorescent aptasensor for the detection of Aflatoxin B1 by graphene oxide mediated quenching and release of fluorescence	20
Comparison of the efficacy of metagenomic next-generation sequencing and Xpert MTB/RIF in the diagnosis of tuberculous meningitis	20
Development and application of a real-time PCR assay for the sensitive detection of diarrheic toxin producer Prorocentrum lima	20
Comparative studies on measurement of membrane potential of bacterial cells treated with ZnO nanoparticles by Spectrofluorometry, fluorescence microscopy and flowcytometry	19
Automatic Bacillus anthracis bacteria detection and segmentation in microscopic images using UNet++	19
Accurate and sensitive analysis of Staphylococcus aureus through CRISPR-Cas12a based recycling signal amplification cascades for early diagnosis of skin and soft tissue infections	19

Evaluation of the matrix-assisted laser desorption ionization time of flight mass spectrometry (MALDI-TOF MS) system in the detection of mastitis pathogens from bovine milk samples	19
Optimization of electrotransformation (ETF) conditions in lactic acid bacteria (LAB)	18
Current methods for the diagnosis of leptospirosis: Issues and challenges	18
Counting bacteria in microfluidic devices: Smartphone compatible ‘dip-and-test’ viable cell quantitation using resazurin amplified detection in microliter capillary arrays	18
Current approaches for the detection of Coxiella burnetii infection in humans and animals	17
Development of a smartphone-based lateral-flow imaging system using machine-learning classifiers for detection of Salmonella spp.	17
Identifying septic pollution exposure routes during a waterborne norovirus outbreak - A new application for human-associated microbial source tracking qPCR	16
Genomics as a potential tool to unravel the rhizosphere microbiome interactions on plant health	15
High-throughput screening alternative to crystal violet biofilm assay combining fluorescence quantification and imaging	15
Easy detection of siderophore production in diluted growth media using an improved CAS reagent	15
Refinement of the Griess method for measuring nitrite in biological samples	14
Nowcasting methods for determining microbiological water quality at recreational beaches and drinking-water source waters	14
Multiplex droplet digital PCR assay for detection of Flavobacterium psychrophilum and Yersinia ruckeri in Norwegian aquaculture	14
Cyanobacterial blooms in wastewater treatment facilities: Significance and emerging monitoring strategies	14
Development of a semi-dynamic in vitro model and its testing using probiotic Bacillus coagulans GBI-30, 6086 in orange juice and yogurt	14
Simplified floral dip transformation method of Arabidopsis thaliana	14
Nano-based drug delivery optimization for tuberculosis treatment: A review	14
Research on the optimization, key chemical constituents and antibacterial activity of the essential oil extraction process of Thuja koraiensis Nakai	14
An improved method for MALDI-TOF analysis of wine-associated yeasts	13
New primers, taxonomic database and cut-off value for processing nxrB gene high-throughput sequencing data by MOTHUR	13
Fast and automated detection of common carbapenemase genes using multiplex real-time PCR on the BD MAX™ system	13
Real-time PCR quantification of Rhizoctonia solani AG-3 from soil samples	13
Culture medium for improved production of conidia for identification and systematic studies of Fusarium pathogens	13
Molecular epidemiology of predominant and emerging Clostridioides difficile ribotypes	13
Optimization of L-asparaginase production from endophytic Fusarium proliferatum using OFAT and RSM and its cytotoxic evaluation	12
Diagnosis of intestinal protozoan infections in patients in Cuba by microscopy and molecular methods: advantages and disadvantages	12
Fast and easy methods for the detection of coliphages	12
Classification of food spoilage bacterial species and their sodium chloride, sodium acetate and glycine tolerance using chemometrics analysis and Raman spectroscopy	12
A rapid screening method to evaluate acidifying activity by lactic acid bacteria	12
Naked-eye detection of Staphylococcus aureus in powdered milk and infant formula using gold nanoparticles	12
Isolation of Harveyi clade Vibrio spp. collected in aquaculture farms: How can the identification issue be addressed?	12
Development of CRISPR-Cas9 knock-in tools for free fatty acid production using the fast-growing cyanobacterial strain Synechococcus elongatus UTEX 2973	12
Gold nanoparticle based immunochromatographic biosensor for rapid diagnosis of Mycobacterium avium subspecies paratuberculosis infection using recombinant protein	12
A review on application of next-generation sequencing methods for profiling of protozoan parasites in water: Current methodologies, challenges, and perspectives	12
Production of inactivated gram-positive and gram-negative species with preserved cellular morphology and integrity	12
Comparative assessment of growth media and incubation conditions for enhanced recovery and isolation of Acinetobacter baumannii from aquatic matrices	11
Screening for acute disseminated histoplasmosis in HIV disease using urinary antigen detection enzyme immunoassay: A pilot study in Cameroon	11
Absolute quantification of priority bacteria in aquaculture using digital PCR	11
A custom amplicon sequencing approach to detect resistance associated mutations and sequence types in Mycoplasma genitalium	11
Expansion and improvement of MALDI-TOF MS databases for accurate identification of Achromobacter species	11
A loop-mediated isothermal amplification (LAMP) assay for the consensus detection of human pathogenic Campylobacter species	11
Rapid differentiation of Moraxella bovoculi genotypes 1 and 2 using MALDI-TOF mass spectrometry profiles	11
Evaluation of non-injury inoculation technique for assessing Sclerotinia stem rot (Sclerotinia sclerotiorum) in oilseed Brassica	11
Rapid detection of KPC-producing Klebsiella pneumoniae in China based on MALDI-TOF MS	11
Development of an indirect Enzyme Linked Immunoassay (iELISA) using monoclonal antibodies against Photorhabdus insect related toxins, PirA and PirB released from Vibrio spp	11
A rapid, antibiotic susceptibility test for multidrug-resistant, Gram-negative bacterial uropathogens using the biochemical assay, DETECT	11
Diagnostic accuracy of the BioFire FilmArray blood culture identification panel when used in critically ill patients with sepsis	11
The pMTL70000 modular, plasmid vector series for strain engineering in Cupriavidus necator H16	10
Proficient mycogenic synthesis of silver nanoparticles by soil derived fungus Aspergillus melleus SSS-10 with cytotoxic and antibacterial potency	10
A new PMA-qPCR method for rapid and accurate detection of viable bacteria and spores of marine-derived Bacillus velezensis B-9987	10

One-step differential detection of Salmonella enterica serovar Typhi, serovar Paratyphi A and other Salmonella spp. by using a quadruplex real-time PCR assay	10
Development and evaluation of a gold nanoparticle based Lateral Flow assay (LFA) strip test for detection of Brucella spp.	10
Optimal surface estimation and thresholding of confocal microscope images of biofilms using Beer's Law	10
Comparative evaluation of the QMAC-dRAST V2.0 system for rapid antibiotic susceptibility testing of Gram-negative blood culture isolates	10
Visualization of probiotics via epifluorescence microscopy and fluorescence in situ hybridization (FISH)	10
Utilization of multiple microbial tools to evaluate efficacy of restoration strategies to improve recreational water quality at a Lake Michigan Beach (Racine, WI)	10
Molecular detection of Phytophthora pluvialis, the causal agent of red needle cast in Pinus radiata	10
Green synthesis, characterization of silver nanoparticals for biomedical application and environmental remediation	10
Drip flow reactor method exhibits excellent reproducibility based on a 10-laboratory collaborative study	10
Taxonomic annotation of 16S rRNA sequences of pig intestinal samples using MG-RAST and QIIME2 generated different microbiota compositions	10
Evaluating the efficiency of TaqMan real-time PCR and serological methods in the detection of Brucella spp. in clinical specimens collected from suspected patients in Ardabil, Iran	9
Clinical evaluation of the APAS® Independence: Automated imaging and interpretation of urine cultures using artificial intelligence with composite reference standard discrepant resolution	9
Determination by isothermal microcalorimetry of the sensitivity of phytopathogenic fungi of tropical fruits against an ethanolic extract of jackfruit leaf (Artocarpus heterophyllus Lam.)	9
Comparison of a novel chemiluminescence immunoassay with the passive agglutination method for the diagnosis of Mycoplasma pneumoniae infection in children	9
Slow adoption of rapid testing: Beach monitoring and notification using qPCR	9
Experimental evidence on the effects of temperature and salinity in morphological traits of the Microcystis aeruginosa complex	9
Comparative study of IS711 and bcsp31-based polymerase chain reaction (PCR) for the diagnosis of human brucellosis in whole blood and serum samples	9
Rapid detection of rifampicin-resistant Mycobacterium tuberculosis, based on isothermal DNA amplification and DNA chromatography	9
Make microalgal cultures axenic again – a fast and simple workflow utilizing fluorescence-activated cell sorting	9
Microbiome analysis from formalin-fixed paraffin-embedded tissues: Current challenges and future perspectives	9
Application of novel bacterial consortium for biodegradation of aromatic amine 2-ABS using response surface methodology	8
Rapid identification of microorganisms from positive blood cultures in pediatric patients by MALDI-TOF MS: Sepsityper kit versus short-term subculture	8
Comparative evaluation of the Bruker Biotyper and Vitek MS matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS) systems for non-albicans Candida and uncommon yea	8
Improved serodiagnosis of histoplasmosis by use of deglycosylated extracellular released antigens of Histoplasma capsulatum	8
A rapid screening method for the detection of specialised metabolites from bacteria: Induction and suppression of metabolites from Burkholderia species	8
Simulating microbial processes in extraterrestrial, aqueous environments	8
Thermus thermophilus DNA can be used as internal control for process monitoring of clinical metagenomic next-generation sequencing of urine samples	8
Five-year cryopreservation at −80 °C of edible and medicinal basidiomycetes by wheat grain technique	8
Development and evaluation of a sensitive recombinase aided amplification assay for rapid detection of Vibrio parahaemolyticus	8
A simple and novel method for the production of polyethylene terephthalate containing agar plates for the growth and detection of bacteria able to hydrolyze this plastic	8
Large-scale comparison of E. coli levels determined by culture and a qPCR method (EPA Draft Method C) in Michigan towards the implementation of rapid, multi-site beach testing	8
Online monitoring of the morphology of an industrial sugarcane biofuel yeast strain via in situ microscopy	8
Measurement uncertainty evaluation and risk of false conformity assessment for microbial enumeration tests	8
FastFung: A novel medium for the culture and isolation of fastidious fungal species from clinical samples	8
A simple method for high molecular-weight genomic DNA extraction suitable for long-read sequencing from spores of an obligate biotroph oomycete	8
A chemical screening method for menaquinone-producing strains based on HPLC-UV technology	8
Assessment of VITEK® 2, MALDI-TOF MS and full gene 16S rRNA sequencing for aerobic endospore-forming bacteria isolated from a pharmaceutical facility	8
Microliter spotting and micro-colony observation: A rapid and simple approach for counting bacterial colony forming units	8
Coculture of P. aeruginosa and S. aureus on cell derived matrix - An in vitro model of biofilms in infected wounds	8
Development of a three-panel multiplex real-time PCR assay for simultaneous detection of nine canine respiratory pathogens	8
Correction pen based paper fluidic device for the detection of multiple gene targets of Leptospira using Loop Mediated Isothermal Amplification	8
Machine learning-based typing of Salmonella enterica O-serogroups by the Fourier-Transform Infrared (FTIR) Spectroscopy-based IR Biotyper system	8
Leptospira transport medium (LTM): A practical tool for leptospires isolation	7
A new recombinant F1 antigen as a cost and time-effective tool for plague diagnosis	7
MALDI-TOF MS database expansion for identification of Bacillus and related genera isolated from a pharmaceutical facility	7
Comparative analysis of rapid agglutination latex test using single-chain antibody fragments (scFv) versus the gold standard Vero cell assay for Shiga toxin (Stx) detection	7
Evaluation of anti-LipL32 carbon nanotube immunofluorescence probe (carbo-lip) and comparison with MAT, IgM ELISA, IgM spot test and culture for early detection of leptospirosis at local hospital	7
A novel image cytometry-based Lactobacillus bacterial enumeration method for the production of kettle sour beer	7
A panel of bioluminescent whole-cell bacterial biosensors for the screening for new antibacterial substances from natural extracts	7
Diversity and composition of gut microbiome of cervical cancer patients: Do results of 16S rRNA sequencing and whole genome sequencing approaches align?	7
Rapid and dynamic detection of antimicrobial treatment response using spectral amplitude modulation in MZO nanostructure-modified quartz crystal microbalance	7
Detection of 2,4-dichlorophenoxyacetic acid herbicide using a FGE-sulfatase based whole-cell Agrobacterium biosensor	7
Detection of microscopic filamentous fungal biofilms – Choosing the suitable methodology	7
A rapid workflow for the characterization of small numbers of unicellular eukaryotes by using correlative light and electron microscopy	7
Collection system investigation microbial source tracking (CSI-MST): Applying molecular markers to identify sewer infrastructure failures	7
Protein extraction from Saccharomyces cerevisiae at different growth phases	7
Optimization of bioconversion of oleuropein, of olive leaf extract, to hydroxytyrosol by Nakazawaea molendini-olei using HPLC-UV and a method of experimental design	7
Community structure and abundance of ACC deaminase containing bacteria in soils with 16S-PICRUSt2 inference or direct acdS gene sequencing	7
Development of a nested PCR assay for detection of Streptococcus equi subspecies equi in clinical equine specimens and comparison with a qPCR assay	7
Eco-friendly degradation of reactive red 195, reactive blue 214, and reactive yellow 145 by Klebsiella pneumoniae MW815592 isolated from textile waste	7
Optimization of a method for diversity analysis of anammox bacteria using high-throughput sequencing of 16S rRNA gene amplicon	7
A promoter assay system using gene targeting in agaricomycetes Pleurotus ostreatus and Coprinopsis cinerea	7
A two-step bioluminescence assay for optimizing antibacterial coating of hollow-fiber membranes with polydopamine in an integrative approach	7
Is skipping the definition of primary and secondary models possible? Prediction of Escherichia coli O157 growth by machine learning	7
High throughput screening to determine the antibacterial activity of Terminalia ferdinandiana (Kakadu plum): A proof of concept	7
An efficient genetic transformation system for Chinese medicine fungus Tolypocladium ophioglossoides	7
Simple and reliable in situ CRISPR-Cas9 nuclease visualization tool is ensuring efficient editing in Streptomyces species	7
Nanoparticle immuno-fluorescent probes as a method for detection of viable E. coli O157:H7	7
Accurate identification of Escherichia albertii by matrix-assisted laser desorption ionization-time of flight mass spectrometry	7
Comparative assessment of three RNA extraction methods for obtaining high-quality RNA from Candida viswanathii biomass	6
Detection of C. difficile toxin as a model assay for performing fully automated high-throughput RT-PCR on clinical stool samples	6
Successful Leptospira genotyping strategy on DNA extracted from canine biological samples	6
Detection of an alkene monooxygenase in vinyl chloride-oxidizing bacteria with GeneFISH	6
Accurate qPCR quantification in polymicrobial communities requires assessment of gDNA extraction efficiency	6
Multiple assessment methodologies in determining the antibiofilm actions of sodium hypochlorite mixed with clodronate or etidronate in endodontic irrigation	6
Method-induced variation in the bacterial cell surface hydrophobicity MATH test	6
Efficiency of fluorescence in situ hybridization (FISH) method for the rapid detection of Salmonella in minced lamb meat: Method analysis and optimization	6
Unique observation method of temperature dependence of diatom floating by direct microscope	6
“Sporotan” a new fluorescent stain for identifying cryptic spores of Rhodobacter johrii	6
Accurate classification of Listeria species by MALDI-TOF mass spectrometry incorporating denoising autoencoder and machine learning	6

Formalin-fixed paraffin-embedded tissues for microbiome analysis in rainbow trout (Oncorhynchus mykiss)	6
Evaluation of MALDI–TOF MS as a tool for detection of Listeria spp. directly from selective enrichment broth from food and stool samples	6
Detection and identification of Giardia species using real-time PCR and sequencing	6
Detection of Exiguobacterium spp. and E. acetylicum on fresh-cut leafy vegetables by a multiplex PCR assay	6
Development of a portable SERS method for testing the antibiotic sensitivity of foodborne bacteria	6
Comparative study of Legiolert with ISO 11731-1998 standard method-conclusions from a Public Health Laboratory	6
New 16S rRNA primers to uncover Bdellovibrio and like organisms diversity and abundance	6
Comparison of FT-IR with whole-genome sequencing for identification of maternal-to‑neonate transmission of antibiotic-resistant bacteria	6
A LAMP-based system for rapid detection of eight common pathogens causing lower respiratory tract infections	6
Quick identification and epidemiological characterization of Francisella tularensis by MALDI-TOF mass spectrometry	6
Performance evaluation of automated BD Phoenix NMIC-500 panel for carbapenemase detection in carbapenem-resistant and carbapenem-susceptible Enterobacterales	6
mCloverBlaster: A tool to make markerless deletions and fusions using lambda red and I-SceI in Gram-negative bacterial genomes	6
CtNorm: Real time PCR cycle of threshold (Ct) normalization algorithm	6
Combination of filtration and immunomagnetic separation based on real-time PCR to detect foodborne pathogens in fresh-cut apple	6
Current methodologies and future direction of Campylobacter isolation and detection from food matrices, clinical samples, and the agricultural environment	6
MALDI-TOF MS platform combined with machine learning to establish a model for rapid identification of methicillin-resistant Staphylococcus aureus	6
Isolation of third generation cephalosporin resistant Enterobacteriaceae from retail meats and detection of extended spectrum beta-lactamase activity	6
Effect of different sample treatment methods on Low Endotoxin Recovery Phenomenon	6
The impact of delayed analysis of positive blood cultures on the performance of short-term culture followed by MALDI-TOF MS	6
A simple sequence-based filtering method for the removal of contaminants in low-biomass 16S rRNA amplicon sequencing approaches	6
Exploring the value of MALDI-TOF MS for the detection of clonal outbreaks of Burkholderia contaminans	6
Agrobacterium tumefaciens-mediated transformation of Coniella granati	5
A novel bioreactor for the stable growth of Ureaplasma parvum and Ureaplasma urealyticum	5
Development of an immunochromatographic lateral flow dipstick for the detection of Mycobacterium tuberculosis 16 kDa antigen (Mtb-strip)	5
Rapid and specific detection of Mycoplasma gallisepticum and Mycoplasma synoviae infection in poultry using single and duplex PCR assays	5
Syringe filter-based DNA aptamer-enzyme-linked colorimetric assay of Salmonella on lettuce	5
Rapid detection of fungi from blood samples of patients with candidemia using modified calcofluor white stain	5
Comparative evaluation of indirect-ELISA and DOT blot assay for serodetection of Mycoplasma gallisepticum and Mycoplasma synoviae antibodies in poultry	5
Novel specific peaks for differentiating the Lactobacillus plantarum group using matrix-assisted laser desorption ionization time-of-flight mass spectrometry	5
Role of temperature, nutrition, oxygen, osmolality, and bacterial strain in inducing a viable but non-culturable state in Campylobacter jejuni	5
Evaluation of VITEK® 2 and MALDI-TOF/MS automated methodologies in the identification of atypical Listeria spp. isolated from food in different regions of Brazil	5
Development of real-time PCR methods for the quantification of Methanoculleus, Methanosarcina and Methanobacterium in anaerobic digestion	5
Predicting the occurrence of monooxygenases and their associated phylotypes in soil microcosms	5
Optimisation of an agar overlay assay for the assessment of the antimicrobial activity of topically applied semi-solid antiseptic products including honey-based formulations	5
Bioremediation of oily seawater by Bacteria immobilization on a novel carrier material containing nutrients	5
Degenerate PCR primers for assays to track steps of nitrogen metabolism by taxonomically diverse microorganisms in a variety of environments	5
Optimising the cut-off of the Bordier Aspergillus IgG ELISA for the diagnosis of chronic pulmonary aspergillosis	5
A quick flow cytometry protocol to assess Helicobacter pylori viability	5
Development of an FTP-LAMP assay based on TaqMan real-time PCR and LAMP for the specific detection of Xylella fastidiosa De Donno and mulberry strains in both plants and insect vectors	5
Comparison of the recommended colistin susceptibility testing methods with colistin gradient strips and semi-automated method for antimicrobial-resistant non-fermenting rods	5
Testing selectivity of bacterial and fungal culture media compared to original silage samples using next generation sequencing	5
Development and comparative evaluation of droplet digital PCR and quantitative PCR for the detection and quantification of Chlamydia psittaci	5
Systematic review and critical reflection on the isolation and identification methods for spoilage associated bacteria in fresh marine fish	5
Hybrid donor-acceptor polymer nanoparticles and combination antibiotic for mitigation of pathogenic bacteria and biofilms	5
A review of molecular identification tools for the opisthorchioidea	5
Functional in vitro screening of probiotic strains for inoculation of piglets as a prophylactic measure towards Enterotoxigenic Escherichia coli infection	5
Regimen and different surfaces interfere with photodynamic therapy on Candida albicans biofilms	5
A comparison of E. coli concentration estimates quantified by the EPA and a Michigan laboratory network using EPA Draft Method C	5
Development of fluorescence-based nucleic acid blot hybridization method using Cy5.5 labeled DNA probes	5
Are all faecal bacteria detected with equal efficiency? A study using next-generation sequencing and quantitative culture of infants' faecal samples	5
Development of a monoclonal antibody for specific detection of Vibrio parahaemolyticus and analysis of its antigen	5
Experimental validation under controlled conditions of real time PCR to quantify arbuscular mycorrhizal colonization in root	5