Journal of Microbiological Methods

Article	Citations
Evaluation of VITEK® 2 and MALDI-TOF/MS automated methodologies in the identification of atypical Listeria spp. isolated from food in different regions of Brazil	44
Production of inactivated gram-positive and gram-negative species with preserved cellular morphology and integrity	41
Coupon position does not affect Pseudomonas aeruginosa and Staphylococcus aureus biofilm densities in the CDC biofilm reactor	36
Identification and antibacterial activity of Thamnolia vermicularis and Thamnolia subuliformis	35
A new killing assay with the Caenorhabditis elegans PX627 mutant to assess the virulence of uropathogenic Escherichia coli strains	31
Editorial Board	30
Improvement of the detection efficiency of 3M™ molecular detection system for Campylobacter in poultry using nitrogen-doped carbon nanodots	29
Editorial Board	28
Method for screening antimicrobial gels against multi-species oral biofilms	26
Editorial Board	26
Mycoplasma hyopneumoniae detection by PCR in naturally infected finishing pigs	25
Evaluation of the simplified carbapenem inactivation method as a phenotypic detection method for carbapenemase-producing Enterobacterales	25
Measurement of lactose concentration in milk by using engineered bacteria producing lycopene	23
Towards digital diagnosis of malaria: How far have we reached?	22
Agrobacterium tumefaciens-mediated transformation of Nigrospora sp. isolated from switchgrass leaves and antagonistic toward plant pathogens	22
Evaluation of RapidChek® SELECT™ for the detection of Salmonella spp. in environmental samples from a veterinary hospital	21
Cell-free production of fluorescent proteins for the discovery of novel ribosome-targeting antibiotics	20
Interrelationship among substrate utilization, metabolic productions, and housekeeping-related gene expression levels in Mortierella alpine CBS 754.68	20
Optimization of the microbiological treatment of sperm for assisted reproductive technology (ART)	19
Assessment of the capacity of Whatman filter papers as support to store stools for the molecular diagnostic testing of soil-transmitted helminthiasis	19
Classification of food spoilage bacterial species and their sodium chloride, sodium acetate and glycine tolerance using chemometrics analysis and Raman spectroscopy	19
Comparative stability of assay results of enterococci measured by culture and qPCR over time in bathing beach waters	19
Establishment and methodological evaluation of a rapid detection method for Cryptococcus neoformans and Cryptococcus gattii species complexes based on CRISPR-Cas12a technology	18
Extracting the potential of advances in pathogen control and food diagnostics	17
Editorial Board	17

Detection of Clostridioides difficile toxin B gene in clinical stool specimens using rapid diagnostic quenching probe-polymerase chain reaction assay	17
Adaptation and validation of a light microscope for use in energy insecure settings: a proof-of-concept study	16
Integrating rapid pathogen identification and antimicrobial susceptibility testing through multiplex TaqMan qPCR assay	16
A screening method for decoloration of xenobiotic dyes by fungi	15
Viability of Saccharomyces cerevisiae during baking of bread dough by flow cytometry	15
Integrated decentralized blood culture incubation: A step towards a 24/7 microbiology service?	15
Antimicrobial susceptibility testing determined by Alfred 60/AST (Alifax®) in a multi-sites lab: performance's evaluation and optimization of workflow	14
Analysis of DNA extraction methods for detection of Treponema pallidum: A comparison of three methods	14
Campylobacter fetus subspecies specific PCR assays inferred from comparative genomic analysis for accurate subspecies identification	14
Labelling of eicosapentaenoic acid with stable isotope 13C in the marine bacterium Shewanella marinintestina	14
Assessment of stool collection and storage conditions for in vitro human gut model studies	14
Improved productivity and dye removal performance of Trametes versicolor pellets using rice husk as a co-substrate	14
Development of an immunochromatographic test for the detection of Mycoplasma pneumoniae GroES antigen	14
A novel PCR-based genotyping method for Proteus mirabilis – Intergenic region polymorphism analysis	14
Experimental validation under controlled conditions of real time PCR to quantify arbuscular mycorrhizal colonization in root	14
Development of a real-time quantitative PCR assay for detection and quantification of the marine bacterium Alteromonas macleodii from coastal environments	13
Cotton strip assay detects soil microbial degradation differences among crop rotation and tillage experiments on Vertisols	13
Construction of an experimental study and addition of adapter sequences using HiDi DNA polymerase for improving DNA normalization methods relevant to novel gene discovery	13
Immunofluorescence detection of Ecytonucleospora hepatopenaei (EHP) in Penaeus vannamei	13
A strip-based assay for detection of CrfA enzyme activity to differentiate Mycobacterium tuberculosis and non-tuberculous mycobacteria	13
Assay of cellulose 1,4-β-cellobiosidase activity in soil	13
Measurement uncertainty evaluation and risk of false conformity assessment for microbial enumeration tests	12
Chemical susceptibility testing of non-tuberculous mycobacterium strains and other aquatic bacteria: Results of a study for the development of a more sensitive and simple method for the detection of N	12
Comparative evaluation of analytical pipelines for illumina short- and nanopore long-read 16S rRNA gene amplicon sequencing with mock microbial communities	12
Formalin-fixed paraffin-embedded tissues for microbiome analysis in rainbow trout (Oncorhynchus mykiss)	12
Combination of the electronic nose with microbiology as a tool for rapid detection of Salmonella	12
Quantitative method for measuring the proportion of bacterial cells expressing phase 1 or 2 of flagellin of Salmonella enterica serovar Typhimurium	12
Fermentation dynamics of bile salt hydrolase production in Heyndrickxia coagulans ATCC 7050 and Lactiplantibacillus plantarum ATCC 10012: Addressing ninhydrin assay limitations with a novel HPTLC–MS m	12
Systematic review and critical reflection on the isolation and identification methods for spoilage associated bacteria in fresh marine fish	11
Screening for acute disseminated histoplasmosis in HIV disease using urinary antigen detection enzyme immunoassay: A pilot study in Cameroon	11
Comparison of recombinant and synthetic listeriolysin- O peptide- based indirect ELISA vis-à-vis cultural isolation for detection of listeriosis in caprine and ovine species	11
Engineering Citrobacter freundii using CRISPR/Cas9 system	11
Efficient Agrobacterium tumefaciens-mediated transformation system of Diaporthe caulivora	11
Automated antimicrobial susceptibility testing of slow-growing Pseudomonas aeruginosa strains in the presence of tetrazolium salt WST-1	11
A simple method for the cultivation of the “unculturable” asterinaceous fungi (Asterinales/Dothideomycetes)	11
Quantitative detection of Ganodermati lucidum immunomodulatory protein-8 by a peptide-antigen-antibody sandwich ELISA	10
Development of a device for cultivation and isolation of microbes using a specialized cellulose film	10
The spatial distribution of aerosols in high-speed bone burring with external irrigation	10
Microcalorimetric growth behavior of E. coli ATCC 25922 in an MCDSC	10
Duplex real-time fluorescent recombinase polymerase amplification for the rapid and sensitive detection of two resistance genes in drug-resistant Staphylococcus aureus	10
A new MALDI-TOF approach for the quick sequence type identification of Legionella pneumophila	10
Validation of a cariogenic biofilm model by evaluating the effect of fluoride on enamel demineralization	9
Comparative performance of different antigens on the lateral flow assay (LFA) platform for the rapid serodiagnosis of paratuberculosis	9
Use of recombinant malate dehydrogenase (MDH) and superoxide dismutase (SOD) [Cu Zn] as antigens in indirect ELISA for diagnosis of bovine brucellosis	9
CtNorm: Real time PCR cycle of threshold (Ct) normalization algorithm	9
Construction and optimization of a multiplex PMAxx-qPCR assay for viable Bacillus cereus and development of a detection kit	9
A method for high-throughput image-based antifungal screening	9
Investigation of dense fine speckled pattern and anti-dense fine speckled 70 antibody by a single step assay	9
Evaluation of phenotypic methods for detection of polymyxin B-resistant bacteria	9
Use of uncoated magnetic beads to capture Mycobacterium smegmatis and Mycobacterium avium paratuberculosis prior detection by mycobacteriophage D29 and real-time-PCR	9

Development and evaluation of an agar capture system (ACS) for high-throughput screening of insoluble particulate substrates with bacterial growth and enzyme activity assays	9
Detection of KPC directly from positive blood cultures by MALDI-TOF: From research to the clinical microbiology laboratory routine	9
A new technique to evaluate Acidithiobacillus thiooxidans growth during a bioleaching process based on DNA quantification	8
Rapid detection of plasmid-mediated AmpC-producers by eazyplex® SuperBug AmpC assay compared to whole-genome sequencing	8
Evaluation of a modified rapid viability-polymerase chain reaction method for Bacillus atrophaeus spores in water matrices	8
Comparison of Brucella abortus population structure based on genotyping methods with different levels of resolution	8
Development of real-time PCR methods for the quantification of Methanoculleus, Methanosarcina and Methanobacterium in anaerobic digestion	8
Objectification of evaluation criteria in microscopic agglutination test using deep learning	8
Development and optimization of a TaqMan assay for Nosema bombycis, causative agent of pébrine disease in Bombyx mori silkworm, based on the β-tubulin gene	8
Identification of emulsification proteins released from the cells by inhibiting the synthesis of GPI-anchor or β-1,3-glucan in Candida albicans	8
Estimation of biosurfactant production parameters and yields without conducting additional experiments on a larger production scale	8
Antimicrobial potential of linear low-density polyethylene food packaging with Ag nanoparticles in different carriers (Silica and Hydroxyapatite)	8
Determination of bactericidal activity against 3HC-2-Tre-labelled Mycobacterium abscessus (Mycobacteroides abscessus) by automated fluorescence microscopy	8
Machine learning-based typing of Salmonella enterica O-serogroups by the Fourier-Transform Infrared (FTIR) Spectroscopy-based IR Biotyper system	7
Phenotypic detection of carbapenemase production in carbapenem-resistant isolates with the rapid carbapenemase detection method (rCDM)	7
Comparative assessment of three RNA extraction methods for obtaining high-quality RNA from Candida viswanathii biomass	7
Establishment of a TaqMan-MGB probe multiplex real-time PCR system for one-step levofloxacin and clarithromycin resistant Helicobacter pylori detection	7
Optimized bacterial absolute quantification method by qPCR using an exogenous bacterial culture as a normalization strategy in triple-species BV-like biofilms	7
Rapid cell counting and viability detection method of Escherichia coli Nissle using image cytometry	7
The future in diagnostic tools for TB outbreaks: A review of the approaches with focus on LAMP and RPA diagnostics tests	7
Development and comparative evaluation of droplet digital PCR and quantitative PCR for the detection and quantification of Chlamydia psittaci	7
Novel mouse monoclonal antibodies against Bordetella pertussis pertactin antigen with versatile applications	7
Role of temperature, nutrition, oxygen, osmolality, and bacterial strain in inducing a viable but non-culturable state in Campylobacter jejuni	7
Development of a novel visual isothermal amplification assay for rapid detection of Brucella spp.	7
Extraction of high-quality metagenomic DNA from the lichens Flavoparmelia caperata and Peltigera membranacea	7
Short-length Homologous Region exhaustive Search algorithm (SHRS): A primer design algorithm for differentiating bacteria at the species, subspecies, or strain level based on a whole genome sequence	7
A comparison of total RNA extraction methods for RT-PCR based differential expression of genes from Trichoderma atrobrunneum	7
The performance of a Fully Automated Urine Particle Analyzer, Sysmex UF-5000, in detecting fastidious bacteria in urine samples	7
Research on the optimization, key chemical constituents and antibacterial activity of the essential oil extraction process of Thuja koraiensis Nakai	7
Metagenomic next-generation sequencing of bronchoalveolar lavage fluid in non-severe and severe pneumonia patients	7
Are GES carbapenemases underdiagnosed? An allelic discrimination assay for their accurate detection and differentiation	6
Detection of macrolide-resistant Mycoplasma pneumoniae using the Kogene Mp-DR real-time PCR assay: A clinical validation study	6
A comparative study of a rapid phenotypic antimicrobial susceptibility testing system directly from positive blood cultures to the disk diffusion and VITEK 2 methods	6
Incubation temperature and culture medium formulation impact the accuracy of pour-plate techniques for the enumeration of industrial Bacillus assemblages	6
Direct Xylella fastidiosa whole genome sequencing from various plant species using targeted enrichment	6
Editorial Board	6
Routine laboratory test enabling the detection of dermatophytes and the identification of Trichophyton rubrum by means of in-house duplex real-time PCR	6
Evaluating β-1,3-glucan synthesis inhibition using emulsion formation as an indicator	6
Development of a new multiplex real-time PCR assay for rapid screening of hospital-acquired infection agents	6
Design of potentially universal SSU primers in myxomycetes using next-generation sequencing	6
Comparison of four enzymatic library preparation kits for sequencing Shiga toxin-producing Escherichia coli for surveillance and outbreak detection	6
Editorial Board	6
Editorial Board	6
Diagnosis of brucellosis disease using data mining: A case study on patients of a hospital in Tehran	6
Editorial Board	6
Development of qPCR methods to detect and quantify the novel Fusarium graminearum 3ANX chemotype variant	6
Editorial Board	6
Meat extract casein peptone agar – A novel culture medium for the enumeration of Bacillus endospores in commercial products	6
Evaluation of a novel sample preparation method for identifying Aspergillus fumigatus using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry: Combining Yatalase and silica	6
A rapid MALDI-TOF mass spectrometry-based method for categorization of Pseudomonas aeruginosa from blood cultures as susceptible or resistant to meropenem	6
Development of a three-panel multiplex real-time PCR assay for simultaneous detection of nine canine respiratory pathogens	6
Target-enriched sequencing enables accurate identification of bloodstream infections in whole blood	5
Serum exosome tRFs as a promising biomarker for active tuberculosis and latent tuberculosis infection	5
Methodology to streamline flow cytometric-based detection of early stage Plasmodium parasitemia in mice	5
Standardization of quantitative PCR (qPCR) method to detect the level of parasitaemia in Babesia gibsoni infected dogs	5
Editorial Board	5
CRISPR: New promising biotechnological tool in wastewater treatment	5
Editorial Board	5
An experimental setup and segmentation method for CFU counting on agar plate for the assessment of drinking water	5
Single-round multiplex PCR with species-specific mitochondrial primers of P. falciparum, P. vivax/P. simium and P. malariae/P. brasilianum: Comparison with standard techniques	5
A simplified laboratory approach for isolating M. oryzae spores from rice samples infected with multiple pathogens	5
Broth microdilution protocol for determining antimicrobial susceptibility of Legionella pneumophila to clinically relevant antimicrobials	5
Bacterial filtration efficiency of medical face masks – Evaluation of the use of disposable plastic petri dishes in Andersen impactor	5
Bacterial worth in genotoxicity assessment studies	5
Highly sensitive quantification of bacterial chondroitin in a culture based on ELISA techniques	5
Eco-friendly degradation of reactive red 195, reactive blue 214, and reactive yellow 145 by Klebsiella pneumoniae MW815592 isolated from textile waste	5
Spectinomycin, gentamicin, and routine disc diffusion testing: An alternative for the treatment and monitoring of multidrug-resistant Neisseria gonorrhoeae?	5
Nanoparticle immuno-fluorescent probes as a method for detection of viable E. coli O157:H7	5
Comparison of peaks in the matrix-assisted laser desorption ionization time-of-flight mass spectrometry spectra of Staphylococcus aureus grown on various blood agar plates	5
An agar-based bioassay for accurate screening of the total antioxidant capacity of lactic acid bacteria cell-free supernatants	5
Rapid detection of KPC-producing Klebsiella pneumoniae in China based on MALDI-TOF MS	5
Interlaboratory evaluations of a standardized quantitative test method for determining the bactericidal and tuberculocidal efficacy of antimicrobial substances on hard non-porous surfaces	5
Mycobacterium tuberculosis complex sample processing by mechanical lysis, an essential step for reliable whole genome sequencing	5
Validation of gavage sampling as tool for longitudinal sampling of microbiota of the mouse gastric lumen	5
Development and validation of real-time PCR assays for the detection of Ehrlichia species and E. chaffeensis in clinical specimens	4
Comparative evaluation of indirect-ELISA and DOT blot assay for serodetection of Mycoplasma gallisepticum and Mycoplasma synoviae antibodies in poultry	4
A simplified and accurate approach to agar diffusion antibiotic assay	4
Improved probe detection sensitivity by flexible tandem biotin labeling	4
Development of an Agrobacterium tumefaciens-mediated transformation system for Tilletia controversa Kühn	4
The role of bacterial exopolysaccharides (EPS) in the synthesis of antimicrobial silver nanomaterials: A state-of-the-art review	4

Designing and developing of high-resolution melting technique for separating different types of Toxoplasma gondii by analysis of B1 and ROP8 gene regions	4
Optimized methodology for obtention of high-yield and -quality RNA from the mycelium of the bioluminescent fungus Neonothopanus gardneri	4
Differentiation of Salmonella vaccinated and infected animals by serological detection of antibody to T3SS effector SsaK in an indirect ELISA	4
Development of ELISA-based diagnostic methods for the detection of haemorrhagic septicaemia in animals	4
Insight into the biotechnology potential of Alicyclobacillus tolerans from whole genome sequence analysis and genome-scale metabolic network modeling.	4
Accurate classification of Listeria species by MALDI-TOF mass spectrometry incorporating denoising autoencoder and machine learning	4
A novel procedure for CFU plating and counting	4
Standardization of in vitro dual-species biofilms of Staphylococcus pseudintermedius and Malassezia pachydermatis: a strategy to establish an ex vivo biofilm model	4
Diagnosis of abdominal tuberculosis: Detection of mycobacterial CFP-10 and HspX proteins by gold nanoparticle-PCR amplified immunoassay	4
Taxonomic annotation of 16S rRNA sequences of pig intestinal samples using MG-RAST and QIIME2 generated different microbiota compositions	4
Development of a MALDI-TOF MS model for differentiating haemorrhagic septicaemia-causing strains of Pasteurella multocida from other capsular groups	4
A study of various factors affecting satellitism tests of Haemophilus influenzae and Haemophilus parainfluenzae using Staphylococcus aureus as the source of NAD	4
Quantification of early biofilm growth in microtiter plates through a novel image analysis software	4
Editorial Board	4
Validation of digital PCR assay for the quantification of Mycobacterium avium subsp. paratuberculosis in bovine faeces according to the ISO 20395:2019	4
Simultaneous quantitation of 3ADON and 15ADON chemotypes of DON-producing Fusarium species in Chinese wheat based on duplex droplet digital PCR assay	4
CAR1 as a new selective marker for genetic engineering of wine yeasts	4
Image cropping for malaria parasite detection on heterogeneous data	4
Temporal modelling of the biofilm lifecycle (TMBL) establishes kinetic analysis of plate-based bacterial biofilm dynamics	4
Evaluation and optimization of lysis method for microbial DNA extraction from epiphytic phyllosphere samples	4
Gene knock-out in Mycobacterium abscessus using Streptococcus thermophilus CRISPR/Cas	4
Development and evaluation of a gold nanoparticle based Lateral Flow assay (LFA) strip test for detection of Brucella spp.	4
Establishing a quantitative index of meropenem hydrolysis for the detection of KPC- and NDM-producing bacteria by MALDI-TOF MS	4
The effect of phage-antibiotic combination strategy on multidrug-resistant Acinetobacter baumannii biofilms	4
Nucleus-directed fluorescent reporter system for promoter studies in the ectomycorrhizal fungus Laccaria bicolor	4
Development and evaluation of a novel quenching probe PCR (GENECUBE) assay for rapidly detecting and distinguishing between Chlamydia pneumoniae and Chlamydia psittaci	4
High resolution ITS amplicon melting analysis as a tool to analyse microbial communities of household biofilms in ex-situ models	4
Development of pBACpAK entrapment vector derivatives to detect intracellular transfer of mobile genetic elements within chloramphenicol resistant bacterial isolates	4
Calculating the limit of detection for a dilution series	4
Study on antigenic protein Omp2b in combination with Omp31 and BP26 for serological detection of human brucellosis	4
Editorial Board	4
Establishing the lower bacterial concentration threshold for different optical counting techniques	4
Development and validation of a miniaturized bacteriophage host range screening assay against antibiotic resistant Pseudomonas aeruginosa	4
Non-amplification nucleic acid detection with thio-NAD cycling	4
Escherichia coli grown in inexpensive conical flat-bottom polypropylene tubes produce a high level of pUC vector	4
Enhanced insecticidal activity of Bacillus thuringiensis using a late embryogenesis abundant peptide co-expression system	4
Germination test for the evaluation of plant-growth promoting microorganisms	4
Determination of streptomycin and doxycycline using LC/MS towards an effective treatment against an experimental Brucella abortus infection in mice	4
Cryptosporidium occultus in disguise	4