Computer Methods and Programs in Biomedicine

Article	Citations
DECT sparse reconstruction based on hybrid spectrum data generative diffusion model	370
Thrombogenic Risk Assessment of Transcatheter Prosthetic Heart Valves Using a Fluid-Structure Interaction Approach	366
LMTTM-VMI: Linked Memory Token Turing Machine for 3D volumetric medical image classification	324
Feature selection integrating Shapley values and mutual information in reinforcement learning: An application in the prediction of post-operative outcomes in patients with end-stage renal disease	195
DEDUCE: Multi-head attention decoupled contrastive learning to discover cancer subtypes based on multi-omics data	156
Lung nodule classification using radiomics model trained on degraded SDCT images	147
Comparative analysis of Zero Pressure Geometry and prestress methods in cardiovascular Fluid-Structure Interaction	140
Fast interactive simulations of cardiac electrical activity in anatomically accurate heart structures by compressing sparse uniform cartesian grids	139
A computationally efficient anisotropic electrophysiological multiscale uterus model: From cell to organ and myometrium to abdominal surface	137
Importance of the enhanced cooling system for more spherical ablation zones: Numerical simulation, ex vivo and in vivo validation	136
AI explainability and bias propagation in medical decision support	132
Concept-based AI interpretability in physiological time-series data: Example of abnormality detection in electroencephalography	118
In silico data-based comparison of the accuracy and error source of various methods for noninvasively estimating central aortic blood pressure	110
Elevating performance and interpretability of in silico classifiers for drug proarrhythmia risk evaluations using multi-biomarker approach with ranking algorithm	110
Analysis of the hemodynamic impact of coronary plaque morphology in mild coronary artery stenosis	109
VAE-Surv: A novel approach for genetic-based clustering and prognosis prediction in myelodysplastic syndromes	108
CASMatching strategy for automated detection and quantification of carotid artery stenosis based on digital subtraction angiography	105
Non-rigid image registration using a modified fuzzy feature-based inference system for 3D cardiac motion estimation	100
Artery vein classification in fundus images using serially connected U-Nets	98
Evaluation of mandibular advancement surgery efficacy in treating obstructive sleep apnea: A study on turbulence kinetic energy	96
Editorial Board	94
Human-airway surface mesh smoothing based on graph convolutional neural networks	94
ECGMiner: A flexible software for accurately digitizing ECG	94
Segmentation of paracentral acute middle maculopathy lesions in spectral-domain optical coherence tomography images through weakly supervised deep convolutional networks	92
COLET: A dataset for COgnitive workLoad estimation based on eye-tracking	85

An ECG generative model of myocardial infarction	84
Computational investigation reveals that the mutant strains of SARS-CoV2 have differential structural and binding properties	83
The feasibility of predicting impending malignant ventricular arrhythmias by using nonlinear features of short heartbeat intervals	80
Practical use of a multicenter clinical research support system connected to electronic medical records	79
Cross-Gram matrices and their use in transfer learning: Application to automatic REM detection using heart rate	71
Raw photoplethysmogram waveforms versus peak-to-peak intervals for machine learning detection of atrial fibrillation: Does waveform matter?	71
Domain adaptation based on rough adjoint inconsistency and optimal transport for identifying autistic patients	71
M-health with cardiac rehabilitation improves functional capacity: A systematic review with meta-analysis	70
Classification of α-thalassemia data using machine learning model	69
Influence of vascular embolism level and drug injection rate on thrombolytic therapy of bifurcated femoral vein: Numerical simulation and validation study	69
Deep reconstruction-recoding network for unsupervised domain adaptation and multi-center generalization in colonoscopy polyp detection	69
MRI radiogenomics for intelligent diagnosis of breast tumors and accurate prediction of neoadjuvant chemotherapy responses-a review	68
Editorial Board	66
Estimators and confidence intervals off2using bootstrap meth	66
A novel higher order appearance texture analysis to diagnose lung cancer based on a modified local ternary pattern	65
Information extraction from medical case reports using OpenAI InstructGPT	65
Comparison of two methods for converting central venous values of acid-base status to arterial values in critically ill patients	65
Pulmonary response prediction through personalized basis functions in a virtual patient model	64
A review of image processing methods for fetal head and brain analysis in ultrasound images	62
Machine learning models for predicting diagnosis or prognosis of COVID-19: A systematic review	58
Electrical-mechanical dynamical coupling between electrocardiographic and photoplethysmographic signals during cardiopulmonary resuscitation	57
Light&fast generative adversarial network for high-fidelity CT image synthesis of liver tumor	57
Spatial feature and resolution maximization GAN for bone suppression in chest radiographs	56
Automatic normalized digital color staining in the recognition of abnormal blood cells using generative adversarial networks	54
Prediction of the position of external markers using a recurrent neural network trained with unbiased online recurrent optimization for safe lung cancer radiotherapy	54
Multi-Modality guidance based surgical navigation for percutaneous endoscopic transforaminal discectomy	54
Integration- and separation-aware adversarial model for cerebrovascular segmentation from TOF-MRA	54
An interactive augmented reality software for facial reconstructive surgeries	54
Data-driven learning to identify biomarkers in bipolar disorder	53
Applications of genome-scale metabolic models to the study of human diseases: A systematic review	53
Interpretable machine learning models for predicting in-hospital death in patients in the intensive care unit with cerebral infarction	52
A vision transformer based approach for analysis of plasmodium vivax life cycle for malaria prediction using thin blood smear microscopic images	52
Advanced OCTA imaging segmentation: Unsupervised, non-linear retinal vessel detection using modified self-organizing maps and joint MGRF modeling	51
Biophysical essentials – A full stack open-source software framework for conserved and advanced analysis of patch-clamp recordings	51
KIEGLFN: A unified acne grading framework on face images	51
Automated anxiety detection using probabilistic binary pattern with ECG signals	50
Semantic-driven synthesis of histological images with controllable cellular distributions	50
VENet: Variational energy network for gland segmentation of pathological images and early gastric cancer diagnosis of whole slide images	49
A hybrid few-shot multiple-instance learning model predicting the aggressiveness of lymphoma in PET/CT images	49
Extremely missing numerical data in Electronic Health Records for machine learning can be managed through simple imputation methods considering informative missingness: A comparative of solutions in a	49
Inflating 2D convolution weights for efficient generation of 3D medical images	49
Identifying the patient harms to include in an in silico clinical trial	48
FEM based simulation of magnetic drug targeting in a multibranched vessel model	48
Improvement and analysis of mechanistic modeling of root canal preparation by a computer-based method	48
Editorial Board	47
SAR-U-Net: Squeeze-and-excitation block and atrous spatial pyramid pooling based residual U-Net for automatic liver segmentation in Computed Tomography	46
CTGAN-driven synthetic data generation: A multidisciplinary, expert-guided approach (TIMA)	46
Fear of falling in community-dwelling older adults: What their gait acceleration pattern reveals	46
Real-time soft body dissection simulation with parallelized graph-based shape matching on GPU	46
Modelling lower-limb peripheral arterial disease using clinically available datasets: impact of inflow boundary conditions on hemodynamic indices for restenosis prediction	46

Editorial Board	46
Direct tool for quantitative analysis of cell/object dynamic behavior – metastasis and far beyond	46
Pact-Net: Parallel CNNs and Transformers for medical image segmentation	46
A self-organizing deep neuro-fuzzy system approach for classification of kidney cancer subtypes using miRNA genomics data	46
The integration of clinical data in the assessment of multiple sclerosis – A review	46
Mechanical behaviors of a new elliptical valve stent in bicuspid aortic valve	46
Longitudinal machine learning modeling of MS patient trajectories improves predictions of disability progression	45
Numerical simulations on periprosthetic bone remodeling: a systematic review	45
Automated ECG classification using a non-local convolutional block attention module	44
The practicability of different preparation of mandibular molar restored by modified endocrown with intracanal extension: Computational analysis using finite element models	44
CureAuxSP: An R package for estimating mixture cure models with auxiliary survival probabilities	44
A deep learning-based interactive medical image segmentation framework with sequential memory	44
Evaluation of cerebrovascular hemodynamics in vascular dementia patients with a new individual computational fluid dynamics algorithm	43
Editorial Board	43
Evaluation of the type I error rate when using parametric bootstrap analysis of a cluster randomized controlled trial with binary outcomes and a small number of clusters	43
CAPNet: Context attention pyramid network for computer-aided detection of microcalcification clusters in digital breast tomosynthesis	42
IODeep: An IOD for the introduction of deep learning in the DICOM standard	41
Biomechanical analysis of all-polyethylene total knee arthroplasty on periprosthetic tibia using the finite element method	41
A novel methodology for evaluation of S	41
Towards precision medicine in breast imaging: A novel open mammography database with tailor-made 3D image retrieval for AI and teaching	41
Editorial Board	41
Sensitivity of hostile hemodynamics to aneurysm geometry via unsupervised shape interpolation	41
A Laplacian regularized graph neural network for predictive modeling of multiple chronic conditions	41
Implementing new computational methods for the study of JCT and SC inner wall basement membrane biomechanics and hydrodynamics	41
Influence of therapeutic grip exercises induced loading rates in distal radius fracture healing with volar locking plate fixation	41
Editorial Board	40
Accurate consistency-based MSA reducing the memory footprint	40
Normalization of series of fundus images to monitor the geographic atrophy growth in dry age-related macular degeneration	40
Meta-computational techniques' for managing spare data: An application in off-pump heart surgery	40
MPC based optimization applied to treatment of HCV infections	39
Using a poroelastodynamic model to investigate the dynamic behaviour of articular cartilage	39
Mechanistic modeling of metastatic relapse in early breast cancer to investigate the biological impact of prognostic biomarkers	39
MRI-based mechanical analysis of carotid atherosclerotic plaque using a material-property-mapping approach	38
Editorial Board	37
Editorial Board	37
A cloud-based consultation and collaboration system for radiotherapy: Remote decision support services for community radiotherapy centers	37
An optimal ablation time prediction model based on minimizing the relapse risk	36
A novel dynamic electromagnetic tracking navigation system for distal locking of intramedullary nails	36
New approach to establish a surgical planning in infantile vallecular cyst synchronous with laryngomalacia based on aerodynamic analysis	36
Equivalent loads from the life-cycle of acetabular cages in relation to bone-graft transformation	36
Knowledge and attitude of healthcare professionals toward the use of telemedicine-robotic remote presence during Hajj	36
Editorial Board	36
VOC-DL: Deep learning prediction model for COVID-19 based on VOC virus variants	35
A cascade of preconditioned conjugate gradient networks for accelerated magnetic resonance imaging	35
Cardiovascular readmissions in Saudi Arabia	35
High Inter-Patient Variability in Sepsis Evolution: A Hidden Markov Model Analysis	35
Development, validation and a case study: The female finite element head model (FeFEHM)	34
Hospital-wide surveillance-based antimicrobial treatments: A Monte-Carlo look-ahead method	34
Recognition of necrotic regions in MRI images of chronic spinal cord injury based on superpixel	34
Incorporating strategy in hybrid surgery for continuous two-level cervical spondylosis from a biomechanical perspective	34
Quantification of the intrinsic neural plexus of the heart – The missing link in histological tissue analysis	34
Spatial-Frequency dual-branch attention model for determining KRAS mutation status in colorectal cancer with T2-weighted MRI	33
Effect of myogenic tone on agonist-mediated vasoconstriction in isolated arteries: A computational study	33
DallphinAtoM: Physiologically based pharmacokinetics software predicting human PK parameters based on physicochemical properties, in vitro and animal in vivo data	33
IFM calculator: An algorithm for interfragmentary motion calculation in finite element analysis	33
Study on transfer learning capabilities for pneumonia classification in chest-x-rays images	33
Spatial dynamics of dengue fever spreading for the coexistence of two serotypes with an application to the city of São Paulo, Brazil	33
MFB-LANN: A lightweight and updatable myocardial infarction diagnosis system based on convolutional neural networks and active learning	33
Automatic Sleep Stage Classification Using Temporal Convolutional Neural Network and New Data Augmentation Technique from Raw Single-Channel EEG	33
VP-Detector: A 3D multi-scale dense convolutional neural network for macromolecule localization and classification in cryo-electron tomograms	32
Differential evolution method to find optimal location of a single-element transducer for transcranial focused ultrasound therapy	32
A parametric head geometry model accounting for variation among adolescent and young adult populations	32
The impact of small movements with dual lumen cannulae during venovenous extracorporeal membrane oxygenation: A computational fluid dynamics analysis	32
An in silico derived dosage and administration guide for effective thermochemical ablation of biological tissues with simultaneous injection of acid and base	32
Learning brain representation using recurrent Wasserstein generative adversarial net	32
Multiple electrocardiogram generator with single-lead electrocardiogram	32
Multi-domain medical image translation generation for lung image classification based on generative adversarial networks	32
Quantitative transmastoid ultrasound for detecting middle ear effusion in pediatric patients	31
Numerical analysis of airflow and particle deposition in multi-fidelity designs of nasal replicas following nasal administration	31
Risk of hypoglycemia in type 1 diabetes management: An in-silico sensitivity analysis to assess and rank the quantitative impact of different behavioral factors	31
ProDiv: Prototype-driven consistent pseudo-bag division for whole-slide image classification	31
Fast and robust parameter estimation with uncertainty quantification for the cardiac function	31
SC-Net: Symmetrical conical network for colorectal pathology image segmentation	31
SI-ViT: Shuffle instance-based Vision Transformer for pancreatic cancer ROSE image classification	31
Big problems in spatio-temporal disease mapping: Methods and software	31
Enhancing AI-CDSS with U-AnoGAN: Tackling data imbalance	31
Consistent representation via contrastive learning for skin lesion diagnosis	31
Dual-space high-frequency learning for transformer-based MRI super-resolution	31
ROE (Radiotherapy Outcomes Estimator): An open-source tool for optimizing radiotherapy prescriptions	30
Real-time model-based cerebral perfusion calculation for ischemic stroke	30

In silico fatigue optimization of TAVR stent designs with physiological motion in a beating heart model	30
Ventricular fibrillation waveform properties influenced by thoracic impedance guided chest compressions in a porcine model	30
HCTMFS: A multi-modal feature selection framework with higher-order correlated topological manifold for ESRDaMCI	30
Estimation of the in-plane ultimate stress of lamellar tissue as a function of bone mineral density and osteocyte lacunae porosity	30
Controllability and accessibility analysis of nonlinear biosystems	30
An intelligent diagnostic method of ECG signal based on Markov transition field and a ResNet	30
Digital biomarkers of mobility and quality of life in Parkinson's disease based on a wearable motion analysis LAB	30
A real-time computer-aided diagnosis method for hydatidiform mole recognition using deep neural network	30
MATLAB-based innovative 3D finite element method simulator for optimized real-time hyperthermia analysis	29
Assessing privacy leakage in synthetic 3-D PET imaging using transversal GAN	29
A robust discriminative multi-atlas label fusion method for hippocampus segmentation from MR image	29
The Gap in the Thickness: Estimating Effectiveness of Pulmonary Nodule Detection in Thick- and Thin-Section CT Images with 3D Deep Neural Networks	29
One-shot screening: Utilization of a two-dimensional convolutional neural network for automatic detection of left ventricular hypertrophy using electrocardiograms	29
Convolutional bi-directional learning and spatial enhanced attentions for lung tumor segmentation	29
Unsupervised detection and classification of heartbeats using the dissimilarity matrix in PCG signals	29
1D-model of the human liver circulatory system	29
Multispectral interlaced sparse sampling photoacoustic tomography based on directional total variation	29
SIMUS3: An open-source simulator for 3-D ultrasound imaging	29
Application of full waveform inversion algorithm in Laplace–Fourier domain for high-contrast ultrasonic bone quantitative imaging	29
CT-based COPD identification using multiple instance learning with two-stage attention	29
Computer modeling of radiofrequency cardiac ablation: 30 years of bioengineering research	28
Deep learning-based tumor microenvironment analysis in colon adenocarcinoma histopathological whole-slide images	28
Influence of genetic mutations to atria vulnerability to atrial fibrillation: An in-silico 3D human atria study	28
Dynamic-MRI quantification of abdominal wall motion and deformation during breathing and muscular contraction	28
Synthetic microbleeds generation for classifier training without ground truth	28
Estimation of tumor parameters using neural networks for inverse bioheat problem	28
A His bundle pacing protocol for suppressing ventricular arrhythmia maintenance and improving defibrillation efficacy	28
A study for lens capsule tearing during capsulotomy by finite element simulation	28
Case studies of clinical decision-making through prescriptive models based on machine learning	28
An automatic pipeline for atlas-based fetal and neonatal brain segmentation and analysis	28
Highlight removal for endoscopic images based on accelerated adaptive non-convex RPCA decomposition	28
Multi-view features integrated 2D\3D Net for glomerulopathy histologic types classification using ultrasound images	27
Automated Data Quality Control in FDOPA brain PET Imaging using Deep Learning	27
Breast mass detection in digital mammography based on anchor-free architecture	27
Using machine learning models for predicting monthly iPTH levels in hemodialysis patients	27
A Novel Combined Level Set Model for Carpus Segmentation from Magnetic Resonance Images with Prior Knowledge aligned in Polar Coordinate System	27
SIAM: Spatial and Intensity Awareness Module for cerebrovascular segmentation	27
A novel convolutional neural network for kidney ultrasound images segmentation	27
Improved algorithm for generating evenly-spaced streamlines from an orientation field on a triangulated surface	27
A simulation study of transcranial magnetoacoustic stimulation of the basal ganglia thalamic neural network to improve pathological beta oscillations in Parkinson's disease	27
Computer simulations of consecutive radiofrequency pulses applied at the same point during cardiac catheter ablation: Implications for lesion size and risk of overheating	27
Experimentally validated modeling of dynamic drug-hERG channel interactions reproducing the binding mechanisms and its importance in action potential duration.	26
Simplified modeling of implanted medical devices with metallic filamentary closed loops exposed to low or medium frequency magnetic fields	26
Patient-specific multi-scale design optimization of transcatheter aortic valve stents	26
Comparison of Mw\Pharm 3.30 and Mw\Pharm ++, a Windows version of pharmacokinetic software for PK/PD monitoring of vancomycin. Part 1: A-posteriori modelling	26
Component quantification of aortic blood flow energy loss using computational fluid-structure interaction hemodynamics	26
A self-learned decomposition and classification model for schizophrenia diagnosis	26
An interactive and realistic phantom for cricothyroidotomy simulation of a patient with obesity through a reusable design using 3D-printing and Arduino	26
Evaluation of eyestrain with vertical electrooculogram	26
Automatic segmentation and reconstruction of intracellular compartments in volumetric electron microscopy data	26
4-dimensional local radial basis function interpolation of large, uniformly spaced datasets	26
Advanced image analysis-based evaluation of protein antibody microarray chemiluminescence signal improves glioma type identification by blood serum proteins concentrations	26
Comparison of joint load, motions and contact stress and bone‐implant interface micromotion of three implant designs for total ankle arthroplasty	26
Using AI and passive medical radiometry for diagnostics (MWR) of venous diseases	26
Automatic data extraction from 24 hour blood pressure measurement reports of a large multicenter clinical trial	25
TGRA-P: Task-driven model predicts 90-day mortality from ICU clinical notes on mechanical ventilation	25
MMViT-Seg: A lightweight transformer and CNN fusion network for COVID-19 segmentation	25
Development of detailed finite element models for in silico analyses of brain impact dynamics	25
Hemodynamic analysis of hepatic arteries for the early evaluation of hepatic fibrosis in biliary atresia	25
Success indicators for an efficient utilization of cloud computing in healthcare organizations: Saudi healthcare as case study	25
High performance multi-platform computing for large-scale image-based finite element modeling of bone	25
Cardi-Net: A deep neural network for classification of cardiac disease using phonocardiogram signal	25
Physically informed deep neural networks for metabolite-corrected plasma input function estimation in dynamic PET imaging	25
Model-based evaluation of local hemodynamic effects of enhanced external counterpulsation	25
Classification-based deep neural network vs mixture density network models for insulin sensitivity prediction problem	25
An automatic segmentation method with self-attention mechanism on left ventricle in gated PET/CT myocardial perfusion imaging	25
Self-supervised monocular depth estimation for gastrointestinal endoscopy	25
Disentangled representation for sequential treatment effect estimation	25
Spectral and network characterization of focal seizure types and phases	25
Cerebral perfusion simulation using realistically generated synthetic trees for healthy and stroke patients	25
Quantifying mesh textile and effective porosities: A straightforward image analysis procedure for morphological analysis of surgical meshes	24
Modeling and ex vivo experimental validation of liver tissue carbonization with laser ablation	24
Online tree-structure-constrained RPCA for background subtraction of X-ray coronary angiography images	24
BreathVisionNet: A pulmonary-function-guided CNN-transformer hybrid model for expiratory CT image synthesis	24
Automatic colonic polyp detection using integration of modified deep residual convolutional neural network and ensemble learning approaches	24
Development of a virtual reality-based zygomatic implant surgery training system with global collision detection and optimized finite element method model	24
ECMO Assistance during Mechanical Ventilation: Effects Induced on Energetic and Haemodynamic Variables	24
Improved generative adversarial network for retinal image super-resolution	24
Interpretable features fusion with precision MRI images deep hashing for brain tumor detection	24
Multi-style spatial attention module for cortical cataract classification in AS-OCT image with supervised contrastive learning	24
Automatic seizure detection by convolutional neural networks with computational complexity analysis	24
Femoral image segmentation based on two-stage convolutional network using 3D-DMFNet and 3D-ResUnet	23
A novel online BCI system using speech imagery and ear-EEG for home appliances control	23
BLA-Net:Boundary learning assisted network for skin lesion segmentation	23
Optimal machine learning methods for prediction of high-flow nasal cannula outcomes using image features from electrical impedance tomography	23
Gold nanorods assisted photothermal therapy of bladder cancer in mice: A computational study on the effects of gold nanorods distribution at the centre, periphery, and surface of bladder cancer	23
Lazy Luna: Extendible software for multilevel reader comparison in cardiovascular magnetic resonance imaging	23
Evaluation of deep learning training strategies for the classification of bone marrow cell images	23
A personalized 0D-1D model of cardiovascular system for the hemodynamic simulation of enhanced external counterpulsation	23
Automated detection and classification of patient–ventilator asynchrony by means of machine learning and simulated data	23
CPSS: Fusing consistency regularization and pseudo-labeling techniques for semi-supervised deep cardiovascular disease detection using all unlabeled electrocardiograms	23
Unsupervised domain adaptation for nuclei segmentation: Adapting from hematoxylin & eosin stained slides to immunohistochemistry stained slides using a curriculum approach	23
Cross-task cognitive workload recognition using a dynamic residual network with attention mechanism based on neurophysiological signals	23
A real-time integrated framework to support clinical decision making for covid-19 patients	22
Dual U-Net residual networks for cardiac magnetic resonance images super-resolution	22