Computer Methods and Programs in Biomedicine

Article	Citations
A real-time computer-aided diagnosis method for hydatidiform mole recognition using deep neural network	488
SIMUS3: An open-source simulator for 3-D ultrasound imaging	467
4-dimensional local radial basis function interpolation of large, uniformly spaced datasets	405
Importance of the enhanced cooling system for more spherical ablation zones: Numerical simulation, ex vivo and in vivo validation	260
Identifying the patient harms to include in an in silico clinical trial	197
Influence of genetic mutations to atria vulnerability to atrial fibrillation: An in-silico 3D human atria study	180
A study on brain tumor dynamics in two-dimensional irregular domain with variable-order time-fractional derivative	179
MHSU-Net: A more versatile neural network for medical image segmentation	171
Editorial Board	169
Dual-modeling computational framework of magnetoelectric core-shell nanoparticles and nanochain for wireless peripheral nerve regeneration	166
VesselKnife – software for the analysis of tubular structures in biomedical images	157
MSigSeg: An R package for multiple signals segmentation	152
CPSS: Fusing consistency regularization and pseudo-labeling techniques for semi-supervised deep cardiovascular disease detection using all unlabeled electrocardiograms	137
CTGAN-driven synthetic data generation: A multidisciplinary, expert-guided approach (TIMA)	123
Accurate consistency-based MSA reducing the memory footprint	122
Evaluation of cerebrovascular hemodynamics in vascular dementia patients with a new individual computational fluid dynamics algorithm	122
Multi-Modality guidance based surgical navigation for percutaneous endoscopic transforaminal discectomy	121
Finite element analysis of conductive hearing loss caused by fixation and detachment of ligament and tendon in the middle ear	118
Multimodal radiomics based on lesion connectome predicts stroke prognosis	104
Lung nodule classification using radiomics model trained on degraded SDCT images	100
MBGA-Net: A multi-branch graph adaptive network for individualized motor imagery EEG classification	100
Influence of therapeutic grip exercises induced loading rates in distal radius fracture healing with volar locking plate fixation	90
Using AI and passive medical radiometry for diagnostics (MWR) of venous diseases	82
IODeep: An IOD for the introduction of deep learning in the DICOM standard	80
Optimal machine learning methods for prediction of high-flow nasal cannula outcomes using image features from electrical impedance tomography	78

Using machine learning models for predicting monthly iPTH levels in hemodialysis patients	78
Biomechanical analysis of all-polyethylene total knee arthroplasty on periprosthetic tibia using the finite element method	77
Evaluation of deep learning training strategies for the classification of bone marrow cell images	76
SC-Net: Symmetrical conical network for colorectal pathology image segmentation	76
Cuffless blood pressure estimation using chaotic features of photoplethysmograms and parallel convolutional neural network	76
CAPNet: Context attention pyramid network for computer-aided detection of microcalcification clusters in digital breast tomosynthesis	74
Computer-aided detection and segmentation of malignant melanoma lesions on whole-body 18	74
A cloud-based consultation and collaboration system for radiotherapy: Remote decision support services for community radiotherapy centers	74
Temporal convolutional neural network-based feature extraction and asynchronous channel information fusion method for heart abnormality detection in phonocardiograms	71
Modelling of cardiac biventricular electromechanics with coronary blood flow to investigate the influence of coronary arterial motion on coronary haemodynamic	69
Prediction of the mode of delivery using artificial intelligence algorithms	67
An automatic pipeline for atlas-based fetal and neonatal brain segmentation and analysis	67
CUAMT: A MRI semi-supervised medical image segmentation framework based on contextual information and mixed uncertainty	67
Artery vein classification in fundus images using serially connected U-Nets	67
Computer modeling of radiofrequency cardiac ablation: 30 years of bioengineering research	65
From local counterfactuals to global feature importance: efficient, robust, and model-agnostic explanations for brain connectivity networks	65
Unsupervised band selection of medical hyperspectral images guided by data gravitation and weak correlation	65
Dynamic-MRI quantification of abdominal wall motion and deformation during breathing and muscular contraction	64
The impact of small movements with dual lumen cannulae during venovenous extracorporeal membrane oxygenation: A computational fluid dynamics analysis	63
Real-time soft body dissection simulation with parallelized graph-based shape matching on GPU	61
A Graph-guided Hybrid Regularization Method For Bioluminescence Tomography	61
Modelling lower-limb peripheral arterial disease using clinically available datasets: impact of inflow boundary conditions on hemodynamic indices for restenosis prediction	60
Differential evolution method to find optimal location of a single-element transducer for transcranial focused ultrasound therapy	60
Fear of falling in community-dwelling older adults: What their gait acceleration pattern reveals	59
Unsupervised domain adaptation for nuclei segmentation: Adapting from hematoxylin & eosin stained slides to immunohistochemistry stained slides using a curriculum approach	59
Light&fast generative adversarial network for high-fidelity CT image synthesis of liver tumor	58
An interactive and realistic phantom for cricothyroidotomy simulation of a patient with obesity through a reusable design using 3D-printing and Arduino	57
VOC-DL: Deep learning prediction model for COVID-19 based on VOC virus variants	57
Medical image super-resolution reconstruction algorithms based on deep learning: A survey	57
Raw photoplethysmogram waveforms versus peak-to-peak intervals for machine learning detection of atrial fibrillation: Does waveform matter?	57
S-Net: A novel shallow network for enhanced detail retention in medical image segmentation	56
Defining a master curve of abdominal aortic aneurysm growth and its potential utility of clinical management	56
Phantom study of an in-house amplitude-gating respiratory method with silicon photomultiplier technology positron emission tomography/computed tomography	56
Artificial intelligence model for tumoral clinical decision support systems	55
Disease X epidemic control using a stochastic model and a deterministic approximation: Performance comparison with and without parameter uncertainties	55
Predicting 6-minute walking test outcomes in patients with chronic obstructive pulmonary disease without physical performance measures	55
A computational method to predict cerebral perfusion flow after endovascular treatment based on invasive pressure and resistance	54
Building robust pathology image analyses with uncertainty quantification	52
Predicting the Risk of Type B Aortic Dissection Using Hemodynamic Parameters in Aortic Arches: A Comparative Study between Healthy and Repaired Aortas	52
A myocardial reorientation method based on feature point detection for quantitative analysis of PET myocardial perfusion imaging	51
SFTNet: A microexpression-based method for depression detection	49
Prediction of iliac limb occlusion after endovascular aneurysm repair for abdominal aortic aneurysm by anatomical and near-wall hemodynamic characteristics combining numerical simulation and in vitro	49
Health classification of Meibomian gland images using keratography 5M based on AlexNet model	49
Retinex-qDPC: Automatic background-rectified quantitative differential phase contrast imaging	47
A probabilistic generative model to discover the treatments of coexisting diseases with missing data	47
3D multi-scale residual fully convolutional neural network for segmentation of extremely large-sized kidney tumor	47
Phys-DAT: A physiologically-based pharmacokinetic model for unraveling the dissolution, transit and absorption processes using PhysPK®	47
Simulation-driven optimization of insulin therapy profiles in a commercial hybrid closed-loop system	46
Multi-classification of arrhythmias using a HCRNet on imbalanced ECG datasets	46
PregGAN: A prognosis prediction model for breast cancer based on conditional generative adversarial networks	46

A multi-task learning model with reinforcement optimization for ASD comorbidity discrimination	45
Extension of physical activity recognition with 3D CNN using encrypted multiple sensory data to federated learning based on multi-key homomorphic encryption	45
A simple agent-based hybrid model to simulate the biophysics of glioblastoma multiforme cells and the concomitant evolution of the oxygen field	45
Automatic registration of dental CT and 3D scanned model using deep split jaw and surface curvature	45
Haemosync: A synchronisation algorithm for multimodal haemodynamic signals	44
Localizing the seizure onset zone and predicting the surgery outcomes in patients with drug-resistant epilepsy: A new approach based on the causal network	44
Integrating prior knowledge with deep learning for optimized quality control in corneal images: A multicenter study	44
Multi-scale simulation of red blood cell trauma in large-scale high-shear flows after Norwood operation	44
TransAnno-Net: A Deep Learning Framework for Accurate Cell Type Annotation of Mouse Lung Tissue Using Self-supervised Pretraining	43
Biomechanical analysis of femoral stems in hinged total knee arthroplasty in physiological and osteoporotic bone	43
Data-driven sleep structure deciphering based on cardiorespiratory signals	43
KUB-UNet: Segmentation of Organs of Urinary System from a KUB X-ray Image	42
United multi-task learning for abdominal contrast-enhanced CT synthesis through joint deformable registration	42
End-to-end multimodal clinical depression recognition using deep neural networks: A comparative analysis	42
PyMIC: A deep learning toolkit for annotation-efficient medical image segmentation	41
Multicentric intelligent cardiotocography signal interpretation using deep semi-supervised domain adaptation via minimax entropy and domain invariance	41
Digital signal extraction approach for cardiotocography image	41
Quantitative cervical spine injury responses in whiplash loading with a numerical method of natural neural reflex consideration	41
In-silico neuro musculoskeletal model reproduces the movement types obtained by spinal micro stimulation	40
Facial expressions to identify post-stroke: A pilot study	40
ML3CNet: Non-local means-assisted automatic framework for lung cancer subtypes classification using histopathological images	40
Translating medical image to radiological report: Adaptive multilevel multi-attention approach	40
A novel MCF-Net: Multi-level context fusion network for 2D medical image segmentation	40
Performance and limitations of a supervised deep learning approach for the histopathological Oxford Classification of glomeruli with IgA nephropathy	40
Modified Theoretical Model Predicts Radial Support Capacity of Polymer Braided Stents	40
SMD-YOLO: An efficient and lightweight detection method for mask wearing status during the COVID-19 pandemic	40
Editorial Board	39
Dynamic elastic modulus assessment of the early degeneration model of an intervertebral disc in cynomolgus monkeys with one strike loading	39
Reallocation of cutaneous and global blood circulation during sauna bathing through a closed-loop model	38
Recurrence quantification analysis of rs-fMRI data: A method to detect subtle changes in the TgF344-AD rat model	38
Spatiotemporal multiscale ICA could invariantly extract task (motor) modes from wavelet subbands of fMRI data	38
Corticosteroid sensitivity detection in sepsis patients using a personalized data mining approach: A clinical investigation	38
Editorial Board	38
Corrigendum to “Generation of post-meal insulin correction boluses in type 1 diabetes simulation models for in-silico clinical trials: More realistic scenarios obtained using a decision tree approach”	38
Editorial Board	38
An improved binary particle swarm optimization algorithm for clinical cancer biomarker identification in microarray data	37
Coronary artery disease severity and location detection using deep-mining-based magnetocardiography pattern features	37
Automatic arteriosclerotic retinopathy grading using four-channel with image merging	37
Effect of pulmonary regurgitation on cardiac functions based on a human bi-ventricle model	37
Comparative biomechanical analysis of rigid vs. flexible fixation devices for the lumbar spine: A geometrically patient-specific poroelastic finite element study	37
Exploring emotional climate recognition in peer conversations through bispectral features and affect dynamics	37
Molecular dynamics simulation of hyaluronic acid hydrogels: Effect of water content on mechanical and tribological properties	37
FM-Net: Deep Learning Network for the Fundamental Matrix Estimation from Biplanar Radiographs	36
Evaluation of the linear and nonlinear classifiers for distinguishing between healthy subjects and patients with valvular heart diseases based on electrocardiograms, seismocardiograms, and gyrocardiog	36
A framework for motor imagery with LSTM neural network	36
MRCON-Net: Multiscale reweighted convolutional coding neural network for low-dose CT imaging	36
Bone mineral density modeling via random field: Normality, stationarity, sex and age dependence	36
A deformation model of pulsating brain tissue for neurosurgery simulation	36
A computer based facial flaps simulator using projective dynamics	35
A neural network framework for immediate temperature prediction of surgical hand-held drilling	35
TGMIL: A hybrid multi-instance learning model based on the Transformer and the Graph Attention Network for whole-slide images classification of renal cell carcinoma	35
Sleep apnea screening based on Photoplethysmography data from wearable bracelets using an information-based similarity approach	34
From free‐text electronic health records to structured cohorts: Onconum, an innovative methodology for real‐world data mining in breast cancer	34
Self-supervised learning with self-distillation on COVID-19 medical image classification	34
A multiconsistent computational methodology to resolve a diffusive epidemiological system with effects of migration, vaccination and quarantine	34
Multi-scale dual-channel feature embedding decoder for biomedical image segmentation	34
Improving convolutional neural network learning based on a hierarchical bezier generative model for stenosis detection in X-ray images	34
Missing data imputation using utility-based regression and sampling approaches	34
Parameter quantification for oxygen transport in the human brain	34
Towards robust multimodal ultrasound classification for liver tumor diagnosis: A generative approach to modality missingness	33
SP-XTIN: A single projection grating-based X-ray tri-contrast imaging network	33
Human-computer interaction on virtual reality-based training system for vascular interventional surgery	33
Displacement voxelization to resolve mesh-image mismatch: Application in deriving dense white matter fiber strains	33
A joint evaluation method of dynamic spectrum extraction methods for non-invasive blood component measurement based on stability coefficient, data point adoption rate, and smoothness of the spectrum	33
Light scattering imaging modal expansion cytometry for label-free single-cell analysis with deep learning	33
Editorial Board	32
Monte Carlo modeling of hepatic steatosis based on stereology and spatial distribution of fat droplets	32
Quality evaluation of induced pluripotent stem cell colonies by fusing multi-source features	32
MM-CCNB: Essential protein prediction using MAX-MIN strategies and compartment of common neighboring approach	32
Data-driven prediction of decannulation probability and timing in patients with severe acquired brain injury	32
Enlarging the thermal coagulation volume during thermochemical ablation with alternating acid-base injection by shortening the injection interval: A computational study	32
Editorial Board	32
Geodesic fiber tracking in white matter using activation function	32
Multi-target reconstruction based on subspace decision optimization for bioluminescence tomography	32
Editorial Board	32
Radiofrequency thermocoagulation of trigeminal nerve assisted by nerve bundle extraction and image fusion based on hamilton-jacobi equation	32
mvLognCorrEst: an R package for sampling from multivariate lognormal distributions and estimating correlations from uncomplete correlation matrix	32
Editorial Board	32
Evaluation of the spline reconstruction technique for preclinical PET imaging	31
Dynamic simulation and analysis of the influence of urethral morphological changes on urodynamics after benign prostatic hyperplasia surgery: A computational fluid dynamics study	31

DARVIC: Dihedral angle-reliant variant impact classifier for functional prediction of missense VUS	31
A novel endoscopic posterior cervical decompression and interbody fusion technique: Feasibility and biomechanical analysis	31
A risk and credibility framework for in silico clinical trials of medical devices	31
Gait performance in toddlers born preterm: A sensor based quantitative characterization	31
Editorial Board	31
A practical strategy for data assimilation of cerebral intra-aneurysmal flows using a variational method with boundary control of velocity	31
Rad4XCNN: A new agnostic method for post-hoc global explanation of CNN-derived features by means of Radiomics	31
Prediction of lung cancer risk based on age and smoking history	31
Information fusion and multi-classifier system for miner fatigue recognition in plateau environments based on electrocardiography and electromyography signals	30
Tailored cancer therapy by magnetic nanoparticle hyperthermia: A virtual scenario simulation method	30
SEMRES - A Triple Security Protected Blockchain Based Medical Record Exchange Structure	30
Neonatal EEG seizure detection using a new signal structural complexity measure based on matching pursuit decomposition with nonstationary dictionary	30
Progression of blood-borne viruses through bloodstream: A comparative mathematical study	30
An end-to-end framework for intima media measurement and atherosclerotic plaque detection in the carotid artery	30
Numerical study on optimization of quantitative treatment conditions for skin cancer photothermal therapy considering multiple blood vessels	30
MBNM: Multi-branch network based on memory features for long-tailed medical image recognition	30
A high-fidelity geometric multiscale hemodynamic model for predicting myocardial ischemia	30
Breathing patterns recognition: A functional data analysis approach	29
Surgical procedure prediction using medical ontological information	29
The synergy of cybernetical intelligence with medical image analysis for deep medicine: A methodological perspective	29
gACSON software for automated segmentation and morphology analyses of myelinated axons in 3D electron microscopy	29
Sensitivity analysis of paediatric knee kinematics to the graft surgical parameters during anterior cruciate ligament reconstruction: A sequentially linked neuromusculoskeletal-finite element analysis	29
Recent advancements and future directions in automatic swallowing analysis via videofluoroscopy: A review	29
Effective active learning in digital pathology: A case study in tumor infiltrating lymphocytes	29
An agent-based model to assess large-scale COVID-19 vaccination campaigns for the Italian territory: The case study of Lombardy region	29
Considering population variability of electrophysiological models improves the in silico assessment of drug-induced torsadogenic risk	29
Image-based Artificial Intelligence models in the diagnosis and classification of vascular anomalies of the soft tissue in the head and neck	29
Assessing ChatGPT's ability to emulate human reviewers in scientific research: A descriptive and qualitative approach	29
A robust myoelectric pattern recognition framework based on individual motor unit activities against electrode array shifts	28
An accurate and trustworthy deep learning approach for bladder tumor segmentation with uncertainty estimation	28
EESCN: A novel spiking neural network method for EEG-based emotion recognition	28
Granger causality test with nonlinear neural-network-based methods: Python package and simulation study	28
GCW-UNet segmentation of cardiac magnetic resonance images for evaluation of left atrial enlargement	28
NeuroDM: Decoding and visualizing human brain activity with EEG-guided diffusion model	28
Lesion attention guided neural network for contrast-enhanced mammography-based biomarker status prediction in breast cancer	28
Nonlinear dose-response relationship in tDCS-induced brain network synchrony: A resting-state whole-brain model analysis	28
A novel fine-tuning and evaluation methodology for large language models on IoT raw data summaries (LLM-RawDMeth): A joint perspective in diabetes care	28
Magnetic resonance image diagnosis of femoral head necrosis based on ResNet18 network	28
A novel CFD-based computed index of microcirculatory resistance (IMR) derived from coronary angiography to assess coronary microcirculation	28
MEDUSA©: A novel Python-based software ecosystem to accelerate brain-computer interface and cognitive neuroscience research	28
Characterization of mechanical properties of adult chests during pre-hospital manual chest compressions through a simple viscoelastic model	28
CAD-RADS scoring of coronary CT angiography with Multi-Axis Vision Transformer: A clinically-inspired deep learning pipeline	28
A Medical image segmentation model with auto-dynamic convolution and location attention mechanism	28
BGCSL: An unsupervised framework reveals the underlying structure of large-scale whole-brain functional connectivity networks	27
The role of AI for improved management of breast cancer: Enhanced diagnosis and health disparity mitigation	27
Virtual diabetic patient with physical activity dynamics	27
Automating COVID-19 epidemiological situation reports based on multiple data sources, the Netherlands, 2020 to 2023	27
Influence of adaptive denoising on Diffusion Kurtosis Imaging at 3T and 7T	27
Real-time estimation of lung deformation from body surface using a general CoordConv CNN	27
Editorial Board	27
Noninvasive and fast method of calculation for instantaneous wave-free ratio based on haemodynamics and deep learning	27
Screening chronic myeloid leukemia neutrophils using a novel 3-Dimensional Spectral Gradient Mapping algorithm on hyperspectral images	27
BaroWavelet: An R-based tool for dynamic baroreflex evaluation through wavelet analysis techniques	27
The effect of CT high-resolution imaging diagnosis based on deep residual network on the pathology of bladder cancer classification and staging	27
Chained occurrences of early afterdepolarizations may create a directional triggered activity to initiate reentrant ventricular tachyarrhythmias	27
Deep learning network for medical volume data segmentation based on multi axial plane fusion	26
Robust asynchronous control of ERP-Based brain-Computer interfaces using deep learning	26
BAPCP: A comprehensive and user-friendly web tool for identifying biomarkers from protein microarray technologies	26
Tumor spheroid elasticity estimation using mechano-microscopy combined with a conditional generative adversarial network	26
PredictMed-epilepsy: A multi-agent based system for epilepsy detection and prediction in neuropediatrics	26
Classification of recurrent major depressive disorder using a residual denoising autoencoder framework: Insights from large-scale multisite fMRI data	26
Multi-event survival analysis through dynamic multi-modal learning for ICU mortality prediction	26
Dual center validation of deep learning for automated multi-label segmentation of thoracic anatomy in bedside chest radiographs	26
Experimental and computational model approach to assess the photothermal effects in transparent nanocrystalline yttria stabilized zirconia cranial implant	26
Generative adversarial network based data augmentation and gender-last training strategy with application to bone age assessment	26
MigraR: An open-source, R-based application for analysis and quantification of cell migration parameters	26
Enhancing multimodal medical image analysis with Slice-Fusion: A novel fusion approach to address modality imbalance	26
Effect of a reduced arterial axial pre-stretch ratio during aging on the cardiac output and cerebral blood flow in the healthy elders	26
Altered dynamic joint space in the lateral condyle compartment following medial unicompartmental knee arthroplasty	26
A Markov Chain methodology for care pathway mapping using health insurance data, a study case on pediatric TBI	26
COVID-19: Estimation of the transmission dynamics in Spain using a stochastic simulator and black-box optimization techniques	26
Computer-aided diagnostic system for hypertensive retinopathy: A review	26
AutoDPS: An unsupervised diffusion model based method for multiple degradation removal in MRI	26
Masked hypergraph learning for weakly supervised histopathology whole slide image classification	25
An expert review of the inverse problem in electrocardiographic imaging for the non-invasive identification of atrial fibrillation drivers	25
Effects of using different algorithms and fiducial points for the detection of interbeat intervals, and different sampling rates on the assessment of pulse rate variability from photoplethysmography	25
DAX-Net: A dual-branch dual-task adaptive cross-weight feature fusion network for robust multi-class cancer classification in pathology images	25
Real-time ultrasound shear wave elastography using a local phase gradient	25
Associative knowledge graphs for efficient sequence storage and retrieval	25
Cross-modal alignment and contrastive learning for enhanced cancer survival prediction	25
Stress analysis of intervertebral disc during occupational activities	25
Monitoring deterioration of knee osteoarthritis using vibration arthrography in daily activities	25
Computational simulation of cellular proliferation using a meshless method	25
Attentional decoder networks for chest X-ray image recognition on high-resolution features	25
Dual-path neural network extracts tumor microenvironment information from whole slide images to predict molecular typing and prognosis of Glioma	25
A Physics-Integrated Deep Learning Approach for Patient-Specific Non-Newtonian Blood Viscosity Assessment using PPG	25
Assessing the impact of tear direction in coronary artery dissection on thrombosis development: A hemodynamic computational study	25
Endoscopic versus laparoscopic bariatric procedures: A computational biomechanical study through a patient-specific approach	25
Symbolic knowledge extraction for explainable nutritional recommenders	25
Dilated densely connected U-Net with uncertainty focus loss for 3D ABUS mass segmentation	24
MemBrain: A deep learning-aided pipeline for detection of membrane proteins in Cryo-electron tomograms	24
Lightweight convolution transformer for cross-patient seizure detection in multi-channel EEG signals	24
Optimization of thread configuration in dental implants through regulating the mechanical stimuli in neighboring bone	24
Machine learning for surgical time prediction	24
Physics-Informed Graph Neural Networks to solve 1-D equations of blood flow	24