Computer Methods and Programs in Biomedicine

Article	Citations
SIMUS3: An open-source simulator for 3-D ultrasound imaging	570
Influence of genetic mutations to atria vulnerability to atrial fibrillation: An in-silico 3D human atria study	509
Modelling of cardiac biventricular electromechanics with coronary blood flow to investigate the influence of coronary arterial motion on coronary haemodynamic	279
Importance of the enhanced cooling system for more spherical ablation zones: Numerical simulation, ex vivo and in vivo validation	221
An interactive and realistic phantom for cricothyroidotomy simulation of a patient with obesity through a reusable design using 3D-printing and Arduino	203
Evaluation of cerebrovascular hemodynamics in vascular dementia patients with a new individual computational fluid dynamics algorithm	190
Editorial Board	178
Using AI and passive medical radiometry for diagnostics (MWR) of venous diseases	172
4-dimensional local radial basis function interpolation of large, uniformly spaced datasets	170
MBGA-Net: A multi-branch graph adaptive network for individualized motor imagery EEG classification	150
CUAMT: A MRI semi-supervised medical image segmentation framework based on contextual information and mixed uncertainty	147
VOC-DL: Deep learning prediction model for COVID-19 based on VOC virus variants	133
Dual-modeling computational framework of magnetoelectric core-shell nanoparticles and nanochain for wireless peripheral nerve regeneration	125
Finite element analysis of conductive hearing loss caused by fixation and detachment of ligament and tendon in the middle ear	123
Modelling lower-limb peripheral arterial disease using clinically available datasets: impact of inflow boundary conditions on hemodynamic indices for restenosis prediction	111
CAPNet: Context attention pyramid network for computer-aided detection of microcalcification clusters in digital breast tomosynthesis	103
IODeep: An IOD for the introduction of deep learning in the DICOM standard	96
From local counterfactuals to global feature importance: efficient, robust, and model-agnostic explanations for brain connectivity networks	92
CTGAN-driven synthetic data generation: A multidisciplinary, expert-guided approach (TIMA)	88
A real-time computer-aided diagnosis method for hydatidiform mole recognition using deep neural network	86
Dynamic-MRI quantification of abdominal wall motion and deformation during breathing and muscular contraction	85
Fear of falling in community-dwelling older adults: What their gait acceleration pattern reveals	85
Computer modeling of radiofrequency cardiac ablation: 30 years of bioengineering research	84
Multi-Modality guidance based surgical navigation for percutaneous endoscopic transforaminal discectomy	83
Biomechanical analysis of all-polyethylene total knee arthroplasty on periprosthetic tibia using the finite element method	81

Optimal machine learning methods for prediction of high-flow nasal cannula outcomes using image features from electrical impedance tomography	80
Using machine learning models for predicting monthly iPTH levels in hemodialysis patients	77
Prediction of the mode of delivery using artificial intelligence algorithms	77
Raw photoplethysmogram waveforms versus peak-to-peak intervals for machine learning detection of atrial fibrillation: Does waveform matter?	76
Multimodal radiomics based on lesion connectome predicts stroke prognosis	75
Artery vein classification in fundus images using serially connected U-Nets	74
MSigSeg: An R package for multiple signals segmentation	72
Differential evolution method to find optimal location of a single-element transducer for transcranial focused ultrasound therapy	72
A cloud-based consultation and collaboration system for radiotherapy: Remote decision support services for community radiotherapy centers	72
FMCW radar based high-precision gridless non-contact vital signs monitoring for Internet of Medical Things	72
An ensemble classifier for emotion classification from EEG and GSR signals for autism detection	68
A temporal convolutional network-based approach and a benchmark dataset for colonoscopy video temporal segmentation	68
Unsupervised band selection of medical hyperspectral images guided by data gravitation and weak correlation	67
Real-time soft body dissection simulation with parallelized graph-based shape matching on GPU	65
SC-Net: Symmetrical conical network for colorectal pathology image segmentation	65
Identifying the patient harms to include in an in silico clinical trial	64
Computer-aided detection and segmentation of malignant melanoma lesions on whole-body 18	64
An automatic pipeline for atlas-based fetal and neonatal brain segmentation and analysis	62
VesselKnife – software for the analysis of tubular structures in biomedical images	61
Unsupervised domain adaptation for nuclei segmentation: Adapting from hematoxylin & eosin stained slides to immunohistochemistry stained slides using a curriculum approach	61
Light&fast generative adversarial network for high-fidelity CT image synthesis of liver tumor	61
Influence of therapeutic grip exercises induced loading rates in distal radius fracture healing with volar locking plate fixation	61
Cuffless blood pressure estimation using chaotic features of photoplethysmograms and parallel convolutional neural network	60
The impact of small movements with dual lumen cannulae during venovenous extracorporeal membrane oxygenation: A computational fluid dynamics analysis	59
Evaluation of deep learning training strategies for the classification of bone marrow cell images	59
A study on brain tumor dynamics in two-dimensional irregular domain with variable-order time-fractional derivative	55
Lung nodule classification using radiomics model trained on degraded SDCT images	53
Temporal convolutional neural network-based feature extraction and asynchronous channel information fusion method for heart abnormality detection in phonocardiograms	53
A Graph-guided Hybrid Regularization Method For Bioluminescence Tomography	53
Medical image super-resolution reconstruction algorithms based on deep learning: A survey	52
CPSS: Fusing consistency regularization and pseudo-labeling techniques for semi-supervised deep cardiovascular disease detection using all unlabeled electrocardiograms	51
Corrigendum to “Generation of post-meal insulin correction boluses in type 1 diabetes simulation models for in-silico clinical trials: More realistic scenarios obtained using a decision tree approach”	50
Recurrence quantification analysis of rs-fMRI data: A method to detect subtle changes in the TgF344-AD rat model	50
Multi-electrode catheter PFA: Computational modeling and in vivo validation of lesion dynamics under energy-dose variants	49
Integrating prior knowledge with deep learning for optimized quality control in corneal images: A multicenter study	49
Multi-scale simulation of red blood cell trauma in large-scale high-shear flows after Norwood operation	49
TransAnno-Net: A Deep Learning Framework for Accurate Cell Type Annotation of Mouse Lung Tissue Using Self-supervised Pretraining	48
A myocardial reorientation method based on feature point detection for quantitative analysis of PET myocardial perfusion imaging	47
Data-driven sleep structure deciphering based on cardiorespiratory signals	47
A computational method to predict cerebral perfusion flow after endovascular treatment based on invasive pressure and resistance	47
Artificial intelligence model for tumoral clinical decision support systems	47
Prediction of iliac limb occlusion after endovascular aneurysm repair for abdominal aortic aneurysm by anatomical and near-wall hemodynamic characteristics combining numerical simulation and in vitro	46
S-Net: A novel shallow network for enhanced detail retention in medical image segmentation	46
Regularized multi-task learning with individual-feature-based task correlations for Alzheimer’s cognitive score prediction	46
A numerical simulation study of soft tissue resection for low-damage precision cancer surgery	45
Modified Theoretical Model Predicts Radial Support Capacity of Polymer Braided Stents	45
Digital signal extraction approach for cardiotocography image	44
ML3CNet: Non-local means-assisted automatic framework for lung cancer subtypes classification using histopathological images	44
Editorial Board	44
Effect of pulmonary regurgitation on cardiac functions based on a human bi-ventricle model	44

A multiconsistent computational methodology to resolve a diffusive epidemiological system with effects of migration, vaccination and quarantine	43
Phantom study of an in-house amplitude-gating respiratory method with silicon photomultiplier technology positron emission tomography/computed tomography	43
Retinex-qDPC: Automatic background-rectified quantitative differential phase contrast imaging	43
Editorial Board	43
Editorial Board	43
In-silico neuro musculoskeletal model reproduces the movement types obtained by spinal micro stimulation	42
Predicting 6-minute walking test outcomes in patients with chronic obstructive pulmonary disease without physical performance measures	42
A probabilistic generative model to discover the treatments of coexisting diseases with missing data	42
A computer based facial flaps simulator using projective dynamics	42
A multi-task learning model with reinforcement optimization for ASD comorbidity discrimination	42
FM-Net: Deep Learning Network for the Fundamental Matrix Estimation from Biplanar Radiographs	42
United multi-task learning for abdominal contrast-enhanced CT synthesis through joint deformable registration	41
Reallocation of cutaneous and global blood circulation during sauna bathing through a closed-loop model	40
Phys-DAT: A physiologically-based pharmacokinetic model for unraveling the dissolution, transit and absorption processes using PhysPK®	40
Haemosync: A synchronisation algorithm for multimodal haemodynamic signals	39
Extension of physical activity recognition with 3D CNN using encrypted multiple sensory data to federated learning based on multi-key homomorphic encryption	39
Multicentric intelligent cardiotocography signal interpretation using deep semi-supervised domain adaptation via minimax entropy and domain invariance	39
Translating medical image to radiological report: Adaptive multilevel multi-attention approach	38
A neural network framework for immediate temperature prediction of surgical hand-held drilling	38
Improving convolutional neural network learning based on a hierarchical bezier generative model for stenosis detection in X-ray images	38
Predicting the Risk of Type B Aortic Dissection Using Hemodynamic Parameters in Aortic Arches: A Comparative Study between Healthy and Repaired Aortas	37
Coronary artery disease severity and location detection using deep-mining-based magnetocardiography pattern features	37
Localizing the seizure onset zone and predicting the surgery outcomes in patients with drug-resistant epilepsy: A new approach based on the causal network	37
A novel MCF-Net: Multi-level context fusion network for 2D medical image segmentation	37
Automatic registration of dental CT and 3D scanned model using deep split jaw and surface curvature	37
3D multi-scale residual fully convolutional neural network for segmentation of extremely large-sized kidney tumor	37
A framework for motor imagery with LSTM neural network	36
A simple agent-based hybrid model to simulate the biophysics of glioblastoma multiforme cells and the concomitant evolution of the oxygen field	36
Evaluation of the linear and nonlinear classifiers for distinguishing between healthy subjects and patients with valvular heart diseases based on electrocardiograms, seismocardiograms, and gyrocardiog	35
Biomechanical analysis of femoral stems in hinged total knee arthroplasty in physiological and osteoporotic bone	35
MRCON-Net: Multiscale reweighted convolutional coding neural network for low-dose CT imaging	35
Dynamic elastic modulus assessment of the early degeneration model of an intervertebral disc in cynomolgus monkeys with one strike loading	35
Quantitative cervical spine injury responses in whiplash loading with a numerical method of natural neural reflex consideration	35
Sleep apnea screening based on Photoplethysmography data from wearable bracelets using an information-based similarity approach	35
Facial expressions to identify post-stroke: A pilot study	34
A deformation model of pulsating brain tissue for neurosurgery simulation	34
SFTNet: A microexpression-based method for depression detection	34
Corticosteroid sensitivity detection in sepsis patients using a personalized data mining approach: A clinical investigation	34
TGMIL: A hybrid multi-instance learning model based on the Transformer and the Graph Attention Network for whole-slide images classification of renal cell carcinoma	34
Disease X epidemic control using a stochastic model and a deterministic approximation: Performance comparison with and without parameter uncertainties	34
Exploring emotional climate recognition in peer conversations through bispectral features and affect dynamics	34
SMD-YOLO: An efficient and lightweight detection method for mask wearing status during the COVID-19 pandemic	34
Self-supervised learning with self-distillation on COVID-19 medical image classification	33
PregGAN: A prognosis prediction model for breast cancer based on conditional generative adversarial networks	33
An improved binary particle swarm optimization algorithm for clinical cancer biomarker identification in microarray data	33
Comparative biomechanical analysis of rigid vs. flexible fixation devices for the lumbar spine: A geometrically patient-specific poroelastic finite element study	33
Health classification of Meibomian gland images using keratography 5M based on AlexNet model	33
Multi-scale dual-channel feature embedding decoder for biomedical image segmentation	33
Molecular dynamics simulation of hyaluronic acid hydrogels: Effect of water content on mechanical and tribological properties	33
KUB-UNet: Segmentation of Organs of Urinary System from a KUB X-ray Image	33
Missing data imputation using utility-based regression and sampling approaches	33
Simulation-driven optimization of insulin therapy profiles in a commercial hybrid closed-loop system	33
Performance and limitations of a supervised deep learning approach for the histopathological Oxford Classification of glomeruli with IgA nephropathy	33
PyMIC: A deep learning toolkit for annotation-efficient medical image segmentation	33
End-to-end multimodal clinical depression recognition using deep neural networks: A comparative analysis	33
From free‐text electronic health records to structured cohorts: Onconum, an innovative methodology for real‐world data mining in breast cancer	32
Editorial Board	32
Prediction of lung cancer risk based on age and smoking history	32
Towards robust multimodal ultrasound classification for liver tumor diagnosis: A generative approach to modality missingness	32
Lesion attention guided neural network for contrast-enhanced mammography-based biomarker status prediction in breast cancer	32
Editorial Board	32
SP-XTIN: A single projection grating-based X-ray tri-contrast imaging network	32
Parameter quantification for oxygen transport in the human brain	32
A novel fine-tuning and evaluation methodology for large language models on IoT raw data summaries (LLM-RawDMeth): A joint perspective in diabetes care	32
Evaluation of the spline reconstruction technique for preclinical PET imaging	31
DARVIC: Dihedral angle-reliant variant impact classifier for functional prediction of missense VUS	31
Multi-target reconstruction based on subspace decision optimization for bioluminescence tomography	31
A practical strategy for data assimilation of cerebral intra-aneurysmal flows using a variational method with boundary control of velocity	31
An agent-based model to assess large-scale COVID-19 vaccination campaigns for the Italian territory: The case study of Lombardy region	31
Surgical procedure prediction using medical ontological information	31
Effective active learning in digital pathology: A case study in tumor infiltrating lymphocytes	31
Editorial Board	31
Editorial Board	31
Neonatal EEG seizure detection using a new signal structural complexity measure based on matching pursuit decomposition with nonstationary dictionary	31
Enlarging the thermal coagulation volume during thermochemical ablation with alternating acid-base injection by shortening the injection interval: A computational study	31
MBNM: Multi-branch network based on memory features for long-tailed medical image recognition	30
CAD-RADS scoring of coronary CT angiography with Multi-Axis Vision Transformer: A clinically-inspired deep learning pipeline	30
Recent advancements and future directions in automatic swallowing analysis via videofluoroscopy: A review	30
MM-CCNB: Essential protein prediction using MAX-MIN strategies and compartment of common neighboring approach	30
Editorial Board	30

Displacement voxelization to resolve mesh-image mismatch: Application in deriving dense white matter fiber strains	30
A high-fidelity geometric multiscale hemodynamic model for predicting myocardial ischemia	30
mvLognCorrEst: an R package for sampling from multivariate lognormal distributions and estimating correlations from uncomplete correlation matrix	30
A novel endoscopic posterior cervical decompression and interbody fusion technique: Feasibility and biomechanical analysis	30
A novel CFD-based computed index of microcirculatory resistance (IMR) derived from coronary angiography to assess coronary microcirculation	29
Image-based Artificial Intelligence models in the diagnosis and classification of vascular anomalies of the soft tissue in the head and neck	29
Dynamic simulation and analysis of the influence of urethral morphological changes on urodynamics after benign prostatic hyperplasia surgery: A computational fluid dynamics study	29
Considering population variability of electrophysiological models improves the in silico assessment of drug-induced torsadogenic risk	29
An end-to-end framework for intima media measurement and atherosclerotic plaque detection in the carotid artery	29
Rad4XCNN: A new agnostic method for post-hoc global explanation of CNN-derived features by means of Radiomics	29
An accurate and trustworthy deep learning approach for bladder tumor segmentation with uncertainty estimation	28
A robust myoelectric pattern recognition framework based on individual motor unit activities against electrode array shifts	28
Human-computer interaction on virtual reality-based training system for vascular interventional surgery	28
A Medical image segmentation model with auto-dynamic convolution and location attention mechanism	28
Gait performance in toddlers born preterm: A sensor based quantitative characterization	28
A risk and credibility framework for in silico clinical trials of medical devices	28
Numerical study on optimization of quantitative treatment conditions for skin cancer photothermal therapy considering multiple blood vessels	28
gACSON software for automated segmentation and morphology analyses of myelinated axons in 3D electron microscopy	28
A joint evaluation method of dynamic spectrum extraction methods for non-invasive blood component measurement based on stability coefficient, data point adoption rate, and smoothness of the spectrum	28
Breathing patterns recognition: A functional data analysis approach	28
Progression of blood-borne viruses through bloodstream: A comparative mathematical study	28
Monte Carlo modeling of hepatic steatosis based on stereology and spatial distribution of fat droplets	28
Information fusion and multi-classifier system for miner fatigue recognition in plateau environments based on electrocardiography and electromyography signals	28
The synergy of cybernetical intelligence with medical image analysis for deep medicine: A methodological perspective	28
GCW-UNet segmentation of cardiac magnetic resonance images for evaluation of left atrial enlargement	27
MEDUSA©: A novel Python-based software ecosystem to accelerate brain-computer interface and cognitive neuroscience research	27
Characterization of mechanical properties of adult chests during pre-hospital manual chest compressions through a simple viscoelastic model	27
Tailored cancer therapy by magnetic nanoparticle hyperthermia: A virtual scenario simulation method	27
Effect of a reduced arterial axial pre-stretch ratio during aging on the cardiac output and cerebral blood flow in the healthy elders	27
Enhancing multimodal medical image analysis with Slice-Fusion: A novel fusion approach to address modality imbalance	27
Altered dynamic joint space in the lateral condyle compartment following medial unicompartmental knee arthroplasty	27
NeuroDM: Decoding and visualizing human brain activity with EEG-guided diffusion model	27
Assessing ChatGPT's ability to emulate human reviewers in scientific research: A descriptive and qualitative approach	27
Granger causality test with nonlinear neural-network-based methods: Python package and simulation study	27
EESCN: A novel spiking neural network method for EEG-based emotion recognition	27
Noninvasive and fast method of calculation for instantaneous wave-free ratio based on haemodynamics and deep learning	27
Assessing the impact of tear direction in coronary artery dissection on thrombosis development: A hemodynamic computational study	27
Interpretable epidemic state estimation via rule based modeling	27
SEMRES - A Triple Security Protected Blockchain Based Medical Record Exchange Structure	27
Light scattering imaging modal expansion cytometry for label-free single-cell analysis with deep learning	27
Nonlinear dose-response relationship in tDCS-induced brain network synchrony: A resting-state whole-brain model analysis	27
BAPCP: A comprehensive and user-friendly web tool for identifying biomarkers from protein microarray technologies	27
Automating COVID-19 epidemiological situation reports based on multiple data sources, the Netherlands, 2020 to 2023	27
An expert review of the inverse problem in electrocardiographic imaging for the non-invasive identification of atrial fibrillation drivers	27
Sensitivity analysis of paediatric knee kinematics to the graft surgical parameters during anterior cruciate ligament reconstruction: A sequentially linked neuromusculoskeletal-finite element analysis	27
A deep dive into the static force transmission of the human masticatory system and its biomechanical effects on the temporomandibular joint	26
Chained occurrences of early afterdepolarizations may create a directional triggered activity to initiate reentrant ventricular tachyarrhythmias	26
Attentional decoder networks for chest X-ray image recognition on high-resolution features	26
Automated quantitative analysis of peri-articular bone microarchitecture in HR-pQCT knee images	26
Multi-event survival analysis through dynamic multi-modal learning for ICU mortality prediction	26
Radiomics feature analysis for survival prediction in multiple myeloma: An automated PET/CT approach	26
The effect of CT high-resolution imaging diagnosis based on deep residual network on the pathology of bladder cancer classification and staging	26
Computational simulation of cellular proliferation using a meshless method	26
AERMNet: Attention-enhanced relational memory network for medical image report generation	26
Developing a reduced order model for pulsatile blood flow simulations using minimal three-dimensional simulation data	26
A Physics-Integrated Deep Learning Approach for Patient-Specific Non-Newtonian Blood Viscosity Assessment using PPG	26
AutoDPS: An unsupervised diffusion model based method for multiple degradation removal in MRI	26
A Markov Chain methodology for care pathway mapping using health insurance data, a study case on pediatric TBI	25
Artery fragment guided approach for enhancing cerebral aneurysm detection in TOF-MRA imaging	25
Skin lesion segmentation using two-phase cross-domain transfer learning framework	25
Generative adversarial network based data augmentation and gender-last training strategy with application to bone age assessment	25
Computer-aided diagnostic system for hypertensive retinopathy: A review	25
Theoretical prediction of early afterdepolarization-evoked triggered activity formation initiating ventricular reentrant arrhythmias	25
Robust asynchronous control of ERP-Based brain-Computer interfaces using deep learning	25
Skin lesion classification based on two-modal images using a multi-scale fully-shared fusion network	25
Dual-path neural network extracts tumor microenvironment information from whole slide images to predict molecular typing and prognosis of Glioma	25
4D-Precise: Learning-based 3D motion estimation and high temporal resolution 4DCT reconstruction from treatment 2D+t X-ray projections	25
Screening chronic myeloid leukemia neutrophils using a novel 3-Dimensional Spectral Gradient Mapping algorithm on hyperspectral images	24
BaroWavelet: An R-based tool for dynamic baroreflex evaluation through wavelet analysis techniques	24
Optimization of thread configuration in dental implants through regulating the mechanical stimuli in neighboring bone	24
Symbolic knowledge extraction for explainable nutritional recommenders	24
Tumor spheroid elasticity estimation using mechano-microscopy combined with a conditional generative adversarial network	24
DE-MRI myocardial fibrosis segmentation and classification model based on multi-scale self-supervision and transformer	24
COVID-19: Estimation of the transmission dynamics in Spain using a stochastic simulator and black-box optimization techniques	24
PredictMed-epilepsy: A multi-agent based system for epilepsy detection and prediction in neuropediatrics	24
Monitoring deterioration of knee osteoarthritis using vibration arthrography in daily activities	24
Editorial Board	24
Real-time estimation of lung deformation from body surface using a general CoordConv CNN	24
Virtual diabetic patient with physical activity dynamics	24
Influence of adaptive denoising on Diffusion Kurtosis Imaging at 3T and 7T	24
Deep learning network for medical volume data segmentation based on multi axial plane fusion	24
Classification of recurrent major depressive disorder using a residual denoising autoencoder framework: Insights from large-scale multisite fMRI data	24
Dual center validation of deep learning for automated multi-label segmentation of thoracic anatomy in bedside chest radiographs	24
Associative knowledge graphs for efficient sequence storage and retrieval	23
Real-time ultrasound shear wave elastography using a local phase gradient	23
Lightweight convolution transformer for cross-patient seizure detection in multi-channel EEG signals	23
Gradient boosted trees with individual explanations: An alternative to logistic regression for viability prediction in the first trimester of pregnancy	23
Scale resolving simulations of the effect of glottis motion and the laryngeal jet on flow dynamics during respiration	23
Precise prediction of multiple anticancer drug efficacy using multi target regression and support vector regression analysis	23
BGCSL: An unsupervised framework reveals the underlying structure of large-scale whole-brain functional connectivity networks	23
Interactive polar diagrams for model comparison	23
DAX-Net: A dual-branch dual-task adaptive cross-weight feature fusion network for robust multi-class cancer classification in pathology images	23
Endoscopic versus laparoscopic bariatric procedures: A computational biomechanical study through a patient-specific approach	23
Experimental and computational model approach to assess the photothermal effects in transparent nanocrystalline yttria stabilized zirconia cranial implant	23
Effects of using different algorithms and fiducial points for the detection of interbeat intervals, and different sampling rates on the assessment of pulse rate variability from photoplethysmography	23