Computer Methods and Programs in Biomedicine

Article	Citations
A real-time computer-aided diagnosis method for hydatidiform mole recognition using deep neural network	456
SIMUS3: An open-source simulator for 3-D ultrasound imaging	444
The impact of small movements with dual lumen cannulae during venovenous extracorporeal membrane oxygenation: A computational fluid dynamics analysis	400
4-dimensional local radial basis function interpolation of large, uniformly spaced datasets	246
Importance of the enhanced cooling system for more spherical ablation zones: Numerical simulation, ex vivo and in vivo validation	176
Identifying the patient harms to include in an in silico clinical trial	175
Influence of genetic mutations to atria vulnerability to atrial fibrillation: An in-silico 3D human atria study	172
A study on brain tumor dynamics in two-dimensional irregular domain with variable-order time-fractional derivative	168
Modelling lower-limb peripheral arterial disease using clinically available datasets: impact of inflow boundary conditions on hemodynamic indices for restenosis prediction	157
MHSU-Net: A more versatile neural network for medical image segmentation	156
Editorial Board	146
CUAMT: A MRI semi-supervised medical image segmentation framework based on contextual information and mixed uncertainty	143
Modelling of cardiac biventricular electromechanics with coronary blood flow to investigate the influence of coronary arterial motion on coronary haemodynamic	135
Dual-modeling computational framework of magnetoelectric core-shell nanoparticles and nanochain for wireless peripheral nerve regeneration	123
An interactive and realistic phantom for cricothyroidotomy simulation of a patient with obesity through a reusable design using 3D-printing and Arduino	118
VesselKnife – software for the analysis of tubular structures in biomedical images	118
CPSS: Fusing consistency regularization and pseudo-labeling techniques for semi-supervised deep cardiovascular disease detection using all unlabeled electrocardiograms	113
MSigSeg: An R package for multiple signals segmentation	113
Unsupervised band selection of medical hyperspectral images guided by data gravitation and weak correlation	102
An automatic pipeline for atlas-based fetal and neonatal brain segmentation and analysis	101
Fear of falling in community-dwelling older adults: What their gait acceleration pattern reveals	96
From local counterfactuals to global feature importance: efficient, robust, and model-agnostic explanations for brain connectivity networks	93
CTGAN-driven synthetic data generation: A multidisciplinary, expert-guided approach (TIMA)	86
Cuffless blood pressure estimation using chaotic features of photoplethysmograms and parallel convolutional neural network	79
Evaluation of deep learning training strategies for the classification of bone marrow cell images	78

Accurate consistency-based MSA reducing the memory footprint	77
Evaluation of cerebrovascular hemodynamics in vascular dementia patients with a new individual computational fluid dynamics algorithm	76
Multi-Modality guidance based surgical navigation for percutaneous endoscopic transforaminal discectomy	75
Finite element analysis of conductive hearing loss caused by fixation and detachment of ligament and tendon in the middle ear	74
VOC-DL: Deep learning prediction model for COVID-19 based on VOC virus variants	74
Dynamic-MRI quantification of abdominal wall motion and deformation during breathing and muscular contraction	72
Differential evolution method to find optimal location of a single-element transducer for transcranial focused ultrasound therapy	72
Multimodal radiomics based on lesion connectome predicts stroke prognosis	72
Raw photoplethysmogram waveforms versus peak-to-peak intervals for machine learning detection of atrial fibrillation: Does waveform matter?	71
Unsupervised domain adaptation for nuclei segmentation: Adapting from hematoxylin & eosin stained slides to immunohistochemistry stained slides using a curriculum approach	71
Lung nodule classification using radiomics model trained on degraded SDCT images	67
Light&fast generative adversarial network for high-fidelity CT image synthesis of liver tumor	66
Influence of therapeutic grip exercises induced loading rates in distal radius fracture healing with volar locking plate fixation	65
MBGA-Net: A multi-branch graph adaptive network for individualized motor imagery EEG classification	65
Using AI and passive medical radiometry for diagnostics (MWR) of venous diseases	63
Computer modeling of radiofrequency cardiac ablation: 30 years of bioengineering research	63
IODeep: An IOD for the introduction of deep learning in the DICOM standard	63
Using machine learning models for predicting monthly iPTH levels in hemodialysis patients	62
Artery vein classification in fundus images using serially connected U-Nets	61
Ontology Driven Smart Health Service Integration	61
Optimal machine learning methods for prediction of high-flow nasal cannula outcomes using image features from electrical impedance tomography	61
A cloud-based consultation and collaboration system for radiotherapy: Remote decision support services for community radiotherapy centers	61
CAPNet: Context attention pyramid network for computer-aided detection of microcalcification clusters in digital breast tomosynthesis	60
Biomechanical analysis of all-polyethylene total knee arthroplasty on periprosthetic tibia using the finite element method	60
A Graph-guided Hybrid Regularization Method For Bioluminescence Tomography	58
Medical image super-resolution reconstruction algorithms based on deep learning: A survey	58
Real-time soft body dissection simulation with parallelized graph-based shape matching on GPU	58
Prediction of the mode of delivery using artificial intelligence algorithms	56
Computer-aided detection and segmentation of malignant melanoma lesions on whole-body 18	56
SC-Net: Symmetrical conical network for colorectal pathology image segmentation	56
Defining a master curve of abdominal aortic aneurysm growth and its potential utility of clinical management	55
A neural network framework for immediate temperature prediction of surgical hand-held drilling	55
S-Net: A novel shallow network for enhanced detail retention in medical image segmentation	54
Multicentric intelligent cardiotocography signal interpretation using deep semi-supervised domain adaptation via minimax entropy and domain invariance	54
Biomechanical analysis of femoral stems in hinged total knee arthroplasty in physiological and osteoporotic bone	54
A multiconsistent computational methodology to resolve a diffusive epidemiological system with effects of migration, vaccination and quarantine	54
Phantom study of an in-house amplitude-gating respiratory method with silicon photomultiplier technology positron emission tomography/computed tomography	53
Digital signal extraction approach for cardiotocography image	53
Predicting 6-minute walking test outcomes in patients with chronic obstructive pulmonary disease without physical performance measures	53
A computational method to predict cerebral perfusion flow after endovascular treatment based on invasive pressure and resistance	52
Disease X epidemic control using a stochastic model and a deterministic approximation: Performance comparison with and without parameter uncertainties	52
Predicting the Risk of Type B Aortic Dissection Using Hemodynamic Parameters in Aortic Arches: A Comparative Study between Healthy and Repaired Aortas	52
Artificial intelligence model for tumoral clinical decision support systems	52
Health classification of Meibomian gland images using keratography 5M based on AlexNet model	50
Building robust pathology image analyses with uncertainty quantification	50
Integrating prior knowledge with deep learning for optimized quality control in corneal images: A multicenter study	49
Data-driven sleep structure deciphering based on cardiorespiratory signals	49
TransAnno-Net: A Deep Learning Framework for Accurate Cell Type Annotation of Mouse Lung Tissue Using Self-supervised Pretraining	48
A myocardial reorientation method based on feature point detection for quantitative analysis of PET myocardial perfusion imaging	47
Prediction of iliac limb occlusion after endovascular aneurysm repair for abdominal aortic aneurysm by anatomical and near-wall hemodynamic characteristics combining numerical simulation and in vitro	47

Performance and limitations of a supervised deep learning approach for the histopathological Oxford Classification of glomeruli with IgA nephropathy	46
SFTNet: A microexpression-based method for depression detection	46
PregGAN: A prognosis prediction model for breast cancer based on conditional generative adversarial networks	46
A simple agent-based hybrid model to simulate the biophysics of glioblastoma multiforme cells and the concomitant evolution of the oxygen field	45
Sleep apnea screening based on Photoplethysmography data from wearable bracelets using an information-based similarity approach	45
Self-supervised learning with self-distillation on COVID-19 medical image classification	44
A probabilistic generative model to discover the treatments of coexisting diseases with missing data	44
Extension of physical activity recognition with 3D CNN using encrypted multiple sensory data to federated learning based on multi-key homomorphic encryption	44
Phys-DAT: A physiologically-based pharmacokinetic model for unraveling the dissolution, transit and absorption processes using PhysPK®	43
Retinex-qDPC: Automatic background-rectified quantitative differential phase contrast imaging	42
Spatiotemporal multiscale ICA could invariantly extract task (motor) modes from wavelet subbands of fMRI data	41
Facial expressions to identify post-stroke: A pilot study	41
Editorial Board	41
Editorial Board	41
Dynamic elastic modulus assessment of the early degeneration model of an intervertebral disc in cynomolgus monkeys with one strike loading	41
Editorial Board	41
3D multi-scale residual fully convolutional neural network for segmentation of extremely large-sized kidney tumor	41
Corticosteroid sensitivity detection in sepsis patients using a personalized data mining approach: A clinical investigation	40
KUB-UNet: Segmentation of Organs of Urinary System from a KUB X-ray Image	40
Corrigendum to “Generation of post-meal insulin correction boluses in type 1 diabetes simulation models for in-silico clinical trials: More realistic scenarios obtained using a decision tree approach”	40
Reallocation of cutaneous and global blood circulation during sauna bathing through a closed-loop model	40
Recurrence quantification analysis of rs-fMRI data: A method to detect subtle changes in the TgF344-AD rat model	40
A deformation model of pulsating brain tissue for neurosurgery simulation	39
Coronary artery disease severity and location detection using deep-mining-based magnetocardiography pattern features	39
MRCON-Net: Multiscale reweighted convolutional coding neural network for low-dose CT imaging	39
Effect of pulmonary regurgitation on cardiac functions based on a human bi-ventricle model	39
Molecular dynamics simulation of hyaluronic acid hydrogels: Effect of water content on mechanical and tribological properties	39
Exploring emotional climate recognition in peer conversations through bispectral features and affect dynamics	39
A framework for motor imagery with LSTM neural network	38
FM-Net: Deep Learning Network for the Fundamental Matrix Estimation from Biplanar Radiographs	38
Haemosync: A synchronisation algorithm for multimodal haemodynamic signals	38
Simulation-driven optimization of insulin therapy profiles in a commercial hybrid closed-loop system	38
Bone mineral density modeling via random field: Normality, stationarity, sex and age dependence	38
United multi-task learning for abdominal contrast-enhanced CT synthesis through joint deformable registration	37
TGMIL: A hybrid multi-instance learning model based on the Transformer and the Graph Attention Network for whole-slide images classification of renal cell carcinoma	37
Improving convolutional neural network learning based on a hierarchical bezier generative model for stenosis detection in X-ray images	37
Multi-scale dual-channel feature embedding decoder for biomedical image segmentation	37
PyMIC: A deep learning toolkit for annotation-efficient medical image segmentation	36
Missing data imputation using utility-based regression and sampling approaches	36
Multi-classification of arrhythmias using a HCRNet on imbalanced ECG datasets	36
A novel MCF-Net: Multi-level context fusion network for 2D medical image segmentation	36
A multi-task learning model with reinforcement optimization for ASD comorbidity discrimination	36
A computer based facial flaps simulator using projective dynamics	36
SMD-YOLO: An efficient and lightweight detection method for mask wearing status during the COVID-19 pandemic	36
An improved binary particle swarm optimization algorithm for clinical cancer biomarker identification in microarray data	36
Localizing the seizure onset zone and predicting the surgery outcomes in patients with drug-resistant epilepsy: A new approach based on the causal network	35
Automatic registration of dental CT and 3D scanned model using deep split jaw and surface curvature	35
Multi-scale simulation of red blood cell trauma in large-scale high-shear flows after Norwood operation	35
End-to-end multimodal clinical depression recognition using deep neural networks: A comparative analysis	35
Automatic arteriosclerotic retinopathy grading using four-channel with image merging	35
ML3CNet: Non-local means-assisted automatic framework for lung cancer subtypes classification using histopathological images	35
Comparative biomechanical analysis of rigid vs. flexible fixation devices for the lumbar spine: A geometrically patient-specific poroelastic finite element study	35
In-silico neuro musculoskeletal model reproduces the movement types obtained by spinal micro stimulation	35
Translating medical image to radiological report: Adaptive multilevel multi-attention approach	35
Quantitative cervical spine injury responses in whiplash loading with a numerical method of natural neural reflex consideration	35
From free‐text electronic health records to structured cohorts: Onconum, an innovative methodology for real‐world data mining in breast cancer	34
Evaluation of the linear and nonlinear classifiers for distinguishing between healthy subjects and patients with valvular heart diseases based on electrocardiograms, seismocardiograms, and gyrocardiog	34
Medical image recognition and segmentation of pathological slices of gastric cancer based on Deeplab v3+ neural network	34
Modified Theoretical Model Predicts Radial Support Capacity of Polymer Braided Stents	34
Parameter quantification for oxygen transport in the human brain	34
A robust myoelectric pattern recognition framework based on individual motor unit activities against electrode array shifts	34
A joint evaluation method of dynamic spectrum extraction methods for non-invasive blood component measurement based on stability coefficient, data point adoption rate, and smoothness of the spectrum	33
Light scattering imaging modal expansion cytometry for label-free single-cell analysis with deep learning	33
Quality evaluation of induced pluripotent stem cell colonies by fusing multi-source features	33
Towards robust multimodal ultrasound classification for liver tumor diagnosis: A generative approach to modality missingness	33
SP-XTIN: A single projection grating-based X-ray tri-contrast imaging network	33
Lesion attention guided neural network for contrast-enhanced mammography-based biomarker status prediction in breast cancer	33
Human-computer interaction on virtual reality-based training system for vascular interventional surgery	33
Displacement voxelization to resolve mesh-image mismatch: Application in deriving dense white matter fiber strains	33
mvLognCorrEst: an R package for sampling from multivariate lognormal distributions and estimating correlations from uncomplete correlation matrix	32
Editorial Board	32
Enlarging the thermal coagulation volume during thermochemical ablation with alternating acid-base injection by shortening the injection interval: A computational study	32
Editorial Board	32
Geodesic fiber tracking in white matter using activation function	32
Multi-target reconstruction based on subspace decision optimization for bioluminescence tomography	32
Surgical procedure prediction using medical ontological information	32
Radiofrequency thermocoagulation of trigeminal nerve assisted by nerve bundle extraction and image fusion based on hamilton-jacobi equation	32
MM-CCNB: Essential protein prediction using MAX-MIN strategies and compartment of common neighboring approach	32
Editorial Board	32
Editorial Board	32

Monte Carlo modeling of hepatic steatosis based on stereology and spatial distribution of fat droplets	32
Prediction of lung cancer risk based on age and smoking history	31
An agent-based model to assess large-scale COVID-19 vaccination campaigns for the Italian territory: The case study of Lombardy region	31
A risk and credibility framework for in silico clinical trials of medical devices	31
Dynamic simulation and analysis of the influence of urethral morphological changes on urodynamics after benign prostatic hyperplasia surgery: A computational fluid dynamics study	31
A novel endoscopic posterior cervical decompression and interbody fusion technique: Feasibility and biomechanical analysis	31
Considering population variability of electrophysiological models improves the in silico assessment of drug-induced torsadogenic risk	31
DARVIC: Dihedral angle-reliant variant impact classifier for functional prediction of missense VUS	31
Editorial Board	31
A practical strategy for data assimilation of cerebral intra-aneurysmal flows using a variational method with boundary control of velocity	31
Rad4XCNN: A new agnostic method for post-hoc global explanation of CNN-derived features by means of Radiomics	31
Gait performance in toddlers born preterm: A sensor based quantitative characterization	31
Evaluation of the spline reconstruction technique for preclinical PET imaging	31
Numerical study on optimization of quantitative treatment conditions for skin cancer photothermal therapy considering multiple blood vessels	30
A Medical image segmentation model with auto-dynamic convolution and location attention mechanism	30
NeuroDM: Decoding and visualizing human brain activity with EEG-guided diffusion model	30
Information fusion and multi-classifier system for miner fatigue recognition in plateau environments based on electrocardiography and electromyography signals	29
Breathing patterns recognition: A functional data analysis approach	29
gACSON software for automated segmentation and morphology analyses of myelinated axons in 3D electron microscopy	29
Characterization of mechanical properties of adult chests during pre-hospital manual chest compressions through a simple viscoelastic model	29
Tailored cancer therapy by magnetic nanoparticle hyperthermia: A virtual scenario simulation method	29
An end-to-end framework for intima media measurement and atherosclerotic plaque detection in the carotid artery	29
A novel CFD-based computed index of microcirculatory resistance (IMR) derived from coronary angiography to assess coronary microcirculation	29
Assessing ChatGPT's ability to emulate human reviewers in scientific research: A descriptive and qualitative approach	29
Neonatal EEG seizure detection using a new signal structural complexity measure based on matching pursuit decomposition with nonstationary dictionary	29
Effective active learning in digital pathology: A case study in tumor infiltrating lymphocytes	29
Progression of blood-borne viruses through bloodstream: A comparative mathematical study	29
GCW-UNet segmentation of cardiac magnetic resonance images for evaluation of left atrial enlargement	29
MBNM: Multi-branch network based on memory features for long-tailed medical image recognition	29
An accurate and trustworthy deep learning approach for bladder tumor segmentation with uncertainty estimation	29
Sensitivity analysis of paediatric knee kinematics to the graft surgical parameters during anterior cruciate ligament reconstruction: A sequentially linked neuromusculoskeletal-finite element analysis	29
A high-fidelity geometric multiscale hemodynamic model for predicting myocardial ischemia	28
Granger causality test with nonlinear neural-network-based methods: Python package and simulation study	28
Magnetic resonance image diagnosis of femoral head necrosis based on ResNet18 network	28
SEMRES - A Triple Security Protected Blockchain Based Medical Record Exchange Structure	28
The synergy of cybernetical intelligence with medical image analysis for deep medicine: A methodological perspective	28
Image-based Artificial Intelligence models in the diagnosis and classification of vascular anomalies of the soft tissue in the head and neck	28
Recent advancements and future directions in automatic swallowing analysis via videofluoroscopy: A review	28
EESCN: A novel spiking neural network method for EEG-based emotion recognition	28
CAD-RADS scoring of coronary CT angiography with Multi-Axis Vision Transformer: A clinically-inspired deep learning pipeline	28
BaroWavelet: An R-based tool for dynamic baroreflex evaluation through wavelet analysis techniques	27
Physics-Informed Graph Neural Networks to solve 1-D equations of blood flow	27
Noninvasive and fast method of calculation for instantaneous wave-free ratio based on haemodynamics and deep learning	27
Automating COVID-19 epidemiological situation reports based on multiple data sources, the Netherlands, 2020 to 2023	27
Data-driven prediction of decannulation probability and timing in patients with severe acquired brain injury	27
Virtual diabetic patient with physical activity dynamics	27
MEDUSA©: A novel Python-based software ecosystem to accelerate brain-computer interface and cognitive neuroscience research	27
Chained occurrences of early afterdepolarizations may create a directional triggered activity to initiate reentrant ventricular tachyarrhythmias	27
Theoretical prediction of early afterdepolarization-evoked triggered activity formation initiating ventricular reentrant arrhythmias	27
The effect of CT high-resolution imaging diagnosis based on deep residual network on the pathology of bladder cancer classification and staging	27
Real-time estimation of lung deformation from body surface using a general CoordConv CNN	27
Editorial Board	27
BGCSL: An unsupervised framework reveals the underlying structure of large-scale whole-brain functional connectivity networks	27
Influence of adaptive denoising on Diffusion Kurtosis Imaging at 3T and 7T	27
Screening chronic myeloid leukemia neutrophils using a novel 3-Dimensional Spectral Gradient Mapping algorithm on hyperspectral images	27
Nonlinear dose-response relationship in tDCS-induced brain network synchrony: A resting-state whole-brain model analysis	27
Computational simulation of cellular proliferation using a meshless method	26
An expert review of the inverse problem in electrocardiographic imaging for the non-invasive identification of atrial fibrillation drivers	26
Effect of a reduced arterial axial pre-stretch ratio during aging on the cardiac output and cerebral blood flow in the healthy elders	26
A deep dive into the static force transmission of the human masticatory system and its biomechanical effects on the temporomandibular joint	26
Dual center validation of deep learning for automated multi-label segmentation of thoracic anatomy in bedside chest radiographs	26
Effects of using different algorithms and fiducial points for the detection of interbeat intervals, and different sampling rates on the assessment of pulse rate variability from photoplethysmography	26
Assessing the impact of tear direction in coronary artery dissection on thrombosis development: A hemodynamic computational study	26
Scale resolving simulations of the effect of glottis motion and the laryngeal jet on flow dynamics during respiration	26
Stress analysis of intervertebral disc during occupational activities	26
Attentional decoder networks for chest X-ray image recognition on high-resolution features	26
Endoscopic versus laparoscopic bariatric procedures: A computational biomechanical study through a patient-specific approach	26
Altered dynamic joint space in the lateral condyle compartment following medial unicompartmental knee arthroplasty	26
Robust asynchronous control of ERP-Based brain-Computer interfaces using deep learning	26
A Physics-Integrated Deep Learning Approach for Patient-Specific Non-Newtonian Blood Viscosity Assessment using PPG	26
Multi-event survival analysis through dynamic multi-modal learning for ICU mortality prediction	26
Monitoring deterioration of knee osteoarthritis using vibration arthrography in daily activities	26
Dual-path neural network extracts tumor microenvironment information from whole slide images to predict molecular typing and prognosis of Glioma	26
BAPCP: A comprehensive and user-friendly web tool for identifying biomarkers from protein microarray technologies	26
Computer-aided diagnostic system for hypertensive retinopathy: A review	25
Validity and reliability of different smartphones applications to measure HRV during short and ultra-short measurements in elite athletes	25
Classification of recurrent major depressive disorder using a residual denoising autoencoder framework: Insights from large-scale multisite fMRI data	25
Tumor spheroid elasticity estimation using mechano-microscopy combined with a conditional generative adversarial network	25
Experimental and computational model approach to assess the photothermal effects in transparent nanocrystalline yttria stabilized zirconia cranial implant	25
AutoDPS: An unsupervised diffusion model based method for multiple degradation removal in MRI	25
PredictMed-epilepsy: A multi-agent based system for epilepsy detection and prediction in neuropediatrics	25
A Markov Chain methodology for care pathway mapping using health insurance data, a study case on pediatric TBI	25
Cross-modal alignment and contrastive learning for enhanced cancer survival prediction	25
Dilated densely connected U-Net with uncertainty focus loss for 3D ABUS mass segmentation	25
Deep learning network for medical volume data segmentation based on multi axial plane fusion	25
Generative adversarial network based data augmentation and gender-last training strategy with application to bone age assessment	25
MigraR: An open-source, R-based application for analysis and quantification of cell migration parameters	25
Enhancing multimodal medical image analysis with Slice-Fusion: A novel fusion approach to address modality imbalance	25
Interactive polar diagrams for model comparison	25
Breast ultrasound tumor image classification using image decomposition and fusion based on adaptive multi-model spatial feature fusion	25
Precise prediction of multiple anticancer drug efficacy using multi target regression and support vector regression analysis	25
COVID-19: Estimation of the transmission dynamics in Spain using a stochastic simulator and black-box optimization techniques	25
Gradient boosted trees with individual explanations: An alternative to logistic regression for viability prediction in the first trimester of pregnancy	24
Real-time ultrasound shear wave elastography using a local phase gradient	24
Machine learning for surgical time prediction	24