OOIR: Observatory of International Research

Papers

(The median citation count of European Biophysics Journal With Biophysics Letters is 2. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2022-01-01 to 2026-01-01.)

Article	Citations
Biophysical characterization of the DNA binding motif of human phospholipid scramblase 1	103
Structure of a novel form of phosphopantetheine adenylyltransferase from Klebsiella pneumoniae at 2.59 Å resolution	32
Long-term memory in Staphylococcus aureus α-hemolysin ion channel kinetics	30
Characterization of Aquaporin Z proteoliposome structure and functionality via microscopy and scattering methods	28
Mechanistic insights of neuronal calcium and IP3 signaling system regulating ATP release during ischemia in progression of Alzheimer’s disease	25
Use of cesium chloride density gradient ultracentrifugation for the purification and characterization of recombinant adeno-associated virus	22
Real-time tilting and twisting motions of ligand-bound states of α7 nicotinic acetylcholine receptor	22
European Biophysics Journal - Special Issue Celebrating the 70th Anniversary of the Institute of Biophysics, Czech Academy of Sciences	21
Choosing the right density for a concentrated protein system like gluten in a coarse-grained model	20
A gene-encoded bioprotein second harmonic generation (SHG) probe from Autographa californica nuclear polyhedrosis virus (AcMNPV) polyhedrin for live cell imaging	18
From survival of irradiated mice to modern molecular insights: a seventy-year journey in radiobiology at the institute of biophysics, Czech academy of sciences	17
Self-assembly of smooth muscle myosin filaments: adaptation of filament length by telokin and Mg·ATP	14
Assessment of protein incorporation into SBA-15 particles and their structural changes	13
Modeling study of kinesin-13 MCAK microtubule depolymerase	13
Electron currents mediated by tonoplast cytochromes b561	12
Cysteine-mediated structural stabilization of the tetrameric GlpF	12
Numerical solution of compartment-based reaction/diffusion models with DABOSS algorithm	12
Pulling short DNA with mismatch base pairs	11
Optimizing electroporation via pulse modulation: a molecular dynamics study	10
Computational discovery of dual potential inhibitors of SARS‐CoV‐2 spike/ACE2 and Mpro: 3D-pharmacophore, docking-based virtual screening, quantum mechanics and molecular dynamics	10
Modulation of conformational features and oligomerization of MMACHC by cobalamin variants: impact of the R161Q mutation in cblC disease	9
Microfluidics for protein interaction studies: current methods, challenges, and future perspectives	9
Analysis of proteins in the light of mutations	9
Interactive multiple binding of oleic acid, warfarin and ibuprofen with human serum albumin revealed by thermal and fluorescence studies	9
Analysis of residue–residue interactions in the structures of ASIC1a suggests possible gating mechanisms	8

Molecular transport through nano-sized multipores of lipid vesicles: a COMSOL simulation study	8
Quadruplexes with a grain of salt: influence of cation type and concentration on DNA G4 stability	8
SViMULATE: a computer program facilitating interactive, multi-mode simulation of analytical ultracentrifugation data	8
14th EBSA congress, July 31 – August 4, 2023, Stockholm, Sweden – Abstracts	8
The effect of ionic redistributions on the microwave dielectric response of cytosol water upon glucose uptake	7
Proceedings of the 26th International Analytical Ultracentrifugation Workshop and Symposium	7
Experimental extraction of Young’s modulus of MCF-7 tissue using atomic force microscopy and the spherical contact models	7
The effects of lithium on human red blood cells studied using optical spectroscopy and laser trap	7
DNA methylation enhances cooperative disentanglement by the Hfq nucleoid-associated protein	7
Time-dependent simulation of blood flow through an abdominal aorta with iliac arteries	7
Mechanical anisotropy of hair affected by genetic diseases highlights structural information related to differential crosslinking in keratins	7
Erythrocytes membrane fluidity changes induced by adenylyl cyclase cascade activation: study using fluorescence recovery after photobleaching	7
Diversity of hydrodynamic radii of intrinsically disordered proteins	7
Rational design of stapled helical peptides as antidiabetic PPARγ antagonists to target coactivator site by decreasing unfavorable entropy penalty instead of increasing favorable enthalpy contribution	6
Reciprocal effect on lateral diffusion of receptor for advanced glycation endproducts and toll-like receptor 4 in the HEK293 cell membrane	6
Quenching of G4-DNA intrinsic fluorescence by ligands	6
Rethinking the protein folding problem from a new perspective	6
DNA binding to small anionic ligands: the case of Orange G dye	6
Structural and functional characterization of Caenorhabditis elegans cyclic GMP-activated channel TAX-4 via molecular dynamics simulations	6
Design of inhibitor peptide sequences based on the interfacial knowledge of the protein G-IgG crystallographic complex and their binding studies with IgG	6
The sleeping bacterium: shedding light on the resuscitation mechanism	6
Thermodynamic and kinetic considerations in DNA triplex formation revealed by ITC	6
The cross-correlation-based analysis to digest the conformational dynamics of the mitoBK channels in terms of their modulation by flavonoids	6
Structure and dynamics of pteridine reductase 1: the key phenomena relevant to enzyme function and drug design	5
A comparative characterisation of commercially available lipid-polymer nanoparticles formed from model membranes	5
Hydrodynamic properties of macromolecules and nanoparticles in dilute solution: a brief essay on classical and modern concepts	5
A quantitative interspecies comparison of the respiratory mucociliary clearance mechanism	5
Relation between flexibility and intrinsically disorder regions in thermosensitive TRP channels reveal allosteric effects	5
On the possibility of the existence of orienting hydrodynamic steering effects in the kinetics of receptor–ligand association	5
Molecular Biophysics Database (MBDB) makes raw measurements findable and reusable	5
On the utility of microfluidic systems to study protein interactions: advantages, challenges, and applications	5
Crystal structure of 4-amino-5-hydroxymethyl-2-methyl pyrimidine phosphate kinase (HMPP kinase) from Thermus thermophilus HB8	5
Professor Emil Paleček: seven decades with electrodes and biomolecules at the Institute of Biophysics of the CAS	5
Mammalian Nudt15 hydrolytic and binding activity on methylated guanosine mononucleotides	4
Physical principles underpinning molecular-level protein evolution	4
Amyloid fibril length distribution from dynamic light scattering data	4
On-the-fly resolution enhancement in X-ray protein crystallography using electric field	4
Exploring the influence of water micro assemblies on protein folding, enzyme catalysis and membrane dynamics	4
An obituary: Dr. Helmut Cölfen 1965–2023	4
AAV analysis by sedimentation velocity analytical ultracentrifugation: beyond empty and full capsids	4
Revealing the single-channel characteristics of OprD (OccAB1) porins from hospital strains of Acinetobacter baumannii	4
Systematic noise removal from analytical ultracentrifugation data with UltraScan	4
Peptide-based pore formation and cell membrane deformation: European Biophysics Journal Prizes at EBSA 2023	4
A new UltraScan module for the characterization and quantification of analytical buoyant density equilibrium experiments to determine AAV capsid loading	4
Molecular dynamics study of collective water vibrations in a DNA hydration shell	4
Analytical ultracentrifugation as a tool for exploring COSAN assemblies	4
An intramolecular disulphide bond in human 4E-T affects its binding to eIF4E1a protein	3
Comparative sedimentation equilibrium analysis of two IgG1 glycoforms: IgGCri and IgGWid	3
Proceedings of the 25th Analytical Ultracentrifugation Workshops and Symposium	3
Micropipette-based biomechanical nanotools on living cells	3

Biophysical characterization of polyphenol aggregates in Moringa oleifera leaves water extract: stability and surface exposure effect on antioxidant activity under dilution	3
A paradigm shift: analytical ultracentrifugation as a multi-attribute platform method in targeted protein degradation	3
Acytota and the evolution of complexity	3
On the role of calcium diffusion and its rapid buffering in intraflagellar signaling	3
Quantitative characterization of non-specific interaction of two globular proteins with Dextran T70 in a binary mixture	3
Biophysical and microbiological aspects of the interaction between Yersinia pestis PsaA and bacteriophage L-413C	3
Determination of the size parameters of α-synuclein amyloid precursor forms through DLS analysis	3
Structural analysis of the peptides temporin-Ra and temporin-Rb and interactions with model membranes	3
Flagellar rotational features of an optically confined bacterium at high frequency and temporal resolution reveal the microorganism’s response to changes in the fluid environment	3
Twist-stretch relations in nucleic acids	3
Ribulose-1,5-bisphosphate carboxylase/oxygenase activase isoforms from diverse species show differences in oligomeric structure, thermal stability, and activity	3
A spectral decomposition quality assessment tool for multi-wavelength AUC experiments with UltraScan	2
Wave propagation through a viscous fluid-filled elastic tube under initial pressure: theoretical and biophysical model	2
Beyond the US-SOMO-AF database: a new website for hydrodynamic, structural, and circular dichroism calculations on user-supplied structures	2
Two-layer elastic models for single-yeast compressibility with flat microlevers	2
Determination of mRNA copy number in degradable lipid nanoparticles via density contrast analytical ultracentrifugation	2
Statistical mechanics of bone damage: a constitutive model	2
In silico study of cytochrome-C binding to a cardiolipin-containing membrane	2
Suitability of double-stranded DNA as a molecular standard for the validation of analytical ultracentrifugation instruments	2
Correction: Abstracts	2
Effects of sugar concentration on the electroporation, size distribution and average size of charged giant unilamellar vesicles	2
Inhibitor design for TMPRSS2: insights from computational analysis of its backbone hydrogen bonds using a simple descriptor	2
Molecular and thermodynamic mechanisms for protein adaptation	2
Syndiotactic hexamer peptide nanodots	2
Application of artificial neural network for the mechano-bactericidal effect of bioinspired nanopatterned surfaces	2
A robust fluorescence-based assay for human erythrocyte Ca++ efflux suitable for high-throughput inhibitor screens	2
Mitochondrial alterations induced by Macrovipera lebetina venom	2
Cell wall channels of Rhodococcus species: identification and characterization of the cell wall channels of Rhodococcus corynebacteroides and Rhodococcus ruber	2
Exploring neural networks to uncover information-richer features for protein interaction prediction	2
Mechanical properties of adherent cell sheets analyzed by deflection of supporting membrane	2
Facilitating the simulation of sedimentation velocity data: new features of SViMULATE	2
Drug–ionic surfactant interactions: density, sound speed, spectroscopic, and electrochemical studies	2
Mechanical waves caused by collective cell migration: generation	2
A fit-less approach to the elasticity of the handles in optical tweezers experiments	2
Isothermal titration calorimetry in the single-injection mode with imperfect mixing	2
Application of electron paramagnetic resonance spectroscopy for determining the relative nanoenvironment fluidity of polymeric micelles	2
Physics of collective cell migration	2
Tautomeric equilibrium and spectroscopic properties of 8-azaguanine revealed by quantum chemistry methods	2
Neurotransmitter uptake of synaptic vesicles studied by X-ray diffraction	2
Physical aspects of epithelial cell–cell interactions: hidden system complexities	2
The role of cholesterol binding in the control of cholesterol by the Scap–Insig system	2