OOIR: Observatory of International Research

Papers

(The TQCC of European Biophysics Journal With Biophysics Letters is 4. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2022-05-01 to 2026-05-01.)

Article	Citations
Biophysical characterization of the DNA binding motif of human phospholipid scramblase 1	130
Long-term memory in Staphylococcus aureus α-hemolysin ion channel kinetics	32
Structure of a novel form of phosphopantetheine adenylyltransferase from Klebsiella pneumoniae at 2.59 Å resolution	32
Characterization of Aquaporin Z proteoliposome structure and functionality via microscopy and scattering methods	29
Mechanistic insights of neuronal calcium and IP3 signaling system regulating ATP release during ischemia in progression of Alzheimer’s disease	26
Real-time tilting and twisting motions of ligand-bound states of α7 nicotinic acetylcholine receptor	25
Weak protein–bicelle binding quantification via surface-based DNA nanolevers	23
Use of cesium chloride density gradient ultracentrifugation for the purification and characterization of recombinant adeno-associated virus	23
Fluorescent bionanosensor for picomolar detection of biomarkers in fluids	14
Biophysical insights into plasmid DNA binding by deinococcus grandis Dps nanocage	14
European Biophysics Journal - Special Issue Celebrating the 70th Anniversary of the Institute of Biophysics, Czech Academy of Sciences	13
Evidence from computational infrared spectroscopy against vibrational detection of propionate by human olfactory receptor OR51E2	13
Choosing the right density for a concentrated protein system like gluten in a coarse-grained model	13
A gene-encoded bioprotein second harmonic generation (SHG) probe from Autographa californica nuclear polyhedrosis virus (AcMNPV) polyhedrin for live cell imaging	13
Self-assembly of smooth muscle myosin filaments: adaptation of filament length by telokin and Mg·ATP	12
Assessment of protein incorporation into SBA-15 particles and their structural changes	11
From survival of irradiated mice to modern molecular insights: a seventy-year journey in radiobiology at the institute of biophysics, Czech academy of sciences	10
Cysteine-mediated structural stabilization of the tetrameric GlpF	10
Statistical mechanics of soft collagenous tissues: a constitutive model with damage for cerebral bridging veins	9
Indenting multicellular spheroids with various tip geometries	9
Achieving femtomolar affinities in structure-based drug design	9
Numerical solution of compartment-based reaction/diffusion models with DABOSS algorithm	8
Modulation of conformational features and oligomerization of MMACHC by cobalamin variants: impact of the R161Q mutation in cblC disease	8
SViMULATE: a computer program facilitating interactive, multi-mode simulation of analytical ultracentrifugation data	8
Analysis of residue–residue interactions in the structures of ASIC1a suggests possible gating mechanisms	8

Pulling short DNA with mismatch base pairs	8
Molecular transport through nano-sized multipores of lipid vesicles: a COMSOL simulation study	8
Microfluidics for protein interaction studies: current methods, challenges, and future perspectives	8
Modeling study of kinesin-13 MCAK microtubule depolymerase	8
Computational discovery of dual potential inhibitors of SARS‐CoV‐2 spike/ACE2 and Mpro: 3D-pharmacophore, docking-based virtual screening, quantum mechanics and molecular dynamics	7
Analysis of proteins in the light of mutations	7
The effect of ionic redistributions on the microwave dielectric response of cytosol water upon glucose uptake	7
Optimizing electroporation via pulse modulation: a molecular dynamics study	7
Measuring bacterial oxygen consumption rate to probe metabolic signature and antimicrobial susceptibility	7
Mechanical anisotropy of hair affected by genetic diseases highlights structural information related to differential crosslinking in keratins	7
Proceedings of the 26th International Analytical Ultracentrifugation Workshop and Symposium	7
Quadruplexes with a grain of salt: influence of cation type and concentration on DNA G4 stability	7
Electron currents mediated by tonoplast cytochromes b561	7
The effects of lithium on human red blood cells studied using optical spectroscopy and laser trap	7
14th EBSA congress, July 31 – August 4, 2023, Stockholm, Sweden – Abstracts	7
Experimental extraction of Young’s modulus of MCF-7 tissue using atomic force microscopy and the spherical contact models	6
Sedimentation velocity analytical ultracentrifugation (SV-AUC) for adeno-associated virus characterization: impact of cell alignment	6
DNA methylation enhances cooperative disentanglement by the Hfq nucleoid-associated protein	6
Diversity of hydrodynamic radii of intrinsically disordered proteins	6
Standardization of cross-site biophysical studies of bovine insulin amyloids is challenged by structural polymorphism	6
Time-dependent simulation of blood flow through an abdominal aorta with iliac arteries	6
Erythrocytes membrane fluidity changes induced by adenylyl cyclase cascade activation: study using fluorescence recovery after photobleaching	6
Rational design of stapled helical peptides as antidiabetic PPARγ antagonists to target coactivator site by decreasing unfavorable entropy penalty instead of increasing favorable enthalpy contribution	6
Relation between flexibility and intrinsically disorder regions in thermosensitive TRP channels reveal allosteric effects	5
DNA binding to small anionic ligands: the case of Orange G dye	5
Reciprocal effect on lateral diffusion of receptor for advanced glycation endproducts and toll-like receptor 4 in the HEK293 cell membrane	5
Thermodynamic and kinetic considerations in DNA triplex formation revealed by ITC	5
Structure and dynamics of pteridine reductase 1: the key phenomena relevant to enzyme function and drug design	5
The cross-correlation-based analysis to digest the conformational dynamics of the mitoBK channels in terms of their modulation by flavonoids	5
Quenching of G4-DNA intrinsic fluorescence by ligands	5
Design of inhibitor peptide sequences based on the interfacial knowledge of the protein G-IgG crystallographic complex and their binding studies with IgG	5
Professor Emil Paleček: seven decades with electrodes and biomolecules at the Institute of Biophysics of the CAS	4
Structural and functional characterization of Caenorhabditis elegans cyclic GMP-activated channel TAX-4 via molecular dynamics simulations	4
On the utility of microfluidic systems to study protein interactions: advantages, challenges, and applications	4
Crystal structure of 4-amino-5-hydroxymethyl-2-methyl pyrimidine phosphate kinase (HMPP kinase) from Thermus thermophilus HB8	4
Hydrodynamic properties of macromolecules and nanoparticles in dilute solution: a brief essay on classical and modern concepts	4
The sleeping bacterium: shedding light on the resuscitation mechanism	4
A comparative characterisation of commercially available lipid-polymer nanoparticles formed from model membranes	4
On the possibility of the existence of orienting hydrodynamic steering effects in the kinetics of receptor–ligand association	4
Molecular Biophysics Database (MBDB) makes raw measurements findable and reusable	4
Rethinking the protein folding problem from a new perspective	4
Clinical use of electrodermal activity and current developments	4