OOIR: Observatory of International Research

Papers

(The TQCC of European Biophysics Journal With Biophysics Letters is 5. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-07-01 to 2025-07-01.)

Article	Citations
Biophysical characterization of the DNA binding motif of human phospholipid scramblase 1	80
Long-term memory in Staphylococcus aureus α-hemolysin ion channel kinetics	27
Structure of a novel form of phosphopantetheine adenylyltransferase from Klebsiella pneumoniae at 2.59 Å resolution	25
Mechanistic insights of neuronal calcium and IP3 signaling system regulating ATP release during ischemia in progression of Alzheimer’s disease	22
Use of cesium chloride density gradient ultracentrifugation for the purification and characterization of recombinant adeno-associated virus	21
Real-time tilting and twisting motions of ligand-bound states of α7 nicotinic acetylcholine receptor	21
A gene-encoded bioprotein second harmonic generation (SHG) probe from Autographa californica nuclear polyhedrosis virus (AcMNPV) polyhedrin for live cell imaging	20
DNA–MBF1 study using molecular dynamics simulations	18
Choosing the right density for a concentrated protein system like gluten in a coarse-grained model	17
From survival of irradiated mice to modern molecular insights: a seventy-year journey in radiobiology at the institute of biophysics, Czech academy of sciences	16
Modeling study of kinesin-13 MCAK microtubule depolymerase	16
‘Chain and running’ induced by mechanical interactions among cells of different phenotypes in the Bacillus subtilis biofilm	16
Self-assembly of smooth muscle myosin filaments: adaptation of filament length by telokin and Mg·ATP	13
Numerical solution of compartment-based reaction/diffusion models with DABOSS algorithm	13
Thermodynamics of semi-specific ligand recognition: the binding of dipeptides to the E.coli dipeptide binding protein DppA	12
Pulling short DNA with mismatch base pairs	11
SViMULATE: a computer program facilitating interactive, multi-mode simulation of analytical ultracentrifugation data	10
Molecular transport through nano-sized multipores of lipid vesicles: a COMSOL simulation study	10
Computational discovery of dual potential inhibitors of SARS‐CoV‐2 spike/ACE2 and Mpro: 3D-pharmacophore, docking-based virtual screening, quantum mechanics and molecular dynamics	10
Interactive multiple binding of oleic acid, warfarin and ibuprofen with human serum albumin revealed by thermal and fluorescence studies	9
Modulation of conformational features and oligomerization of MMACHC by cobalamin variants: impact of the R161Q mutation in cblC disease	9
Microfluidics for protein interaction studies: current methods, challenges, and future perspectives	9
Quadruplexes with a grain of salt: influence of cation type and concentration on DNA G4 stability	9
Analysis of residue–residue interactions in the structures of ASIC1a suggests possible gating mechanisms	9
The effects of lithium on human red blood cells studied using optical spectroscopy and laser trap	8

Mechanical anisotropy of hair affected by genetic diseases highlights structural information related to differential crosslinking in keratins	8
14th EBSA congress, July 31 – August 4, 2023, Stockholm, Sweden – Abstracts	8
Analysis of proteins in the light of mutations	8
The effect of ionic redistributions on the microwave dielectric response of cytosol water upon glucose uptake	8
A quantitative interspecies comparison of the respiratory mucociliary clearance mechanism	7
Erythrocytes membrane fluidity changes induced by adenylyl cyclase cascade activation: study using fluorescence recovery after photobleaching	7
Experimental extraction of Young’s modulus of MCF-7 tissue using atomic force microscopy and the spherical contact models	7
Relation between flexibility and intrinsically disorder regions in thermosensitive TRP channels reveal allosteric effects	7
KD determination from time-resolved experiments on live cells with LigandTracer and reconciliation with end-point flow cytometry measurements	7
Time-dependent simulation of blood flow through an abdominal aorta with iliac arteries	7
DNA binding to small anionic ligands: the case of Orange G dye	7
Rational design of stapled helical peptides as antidiabetic PPARγ antagonists to target coactivator site by decreasing unfavorable entropy penalty instead of increasing favorable enthalpy contribution	7
Diversity of hydrodynamic radii of intrinsically disordered proteins	7
The cross-correlation-based analysis to digest the conformational dynamics of the mitoBK channels in terms of their modulation by flavonoids	6
Reciprocal effect on lateral diffusion of receptor for advanced glycation endproducts and toll-like receptor 4 in the HEK293 cell membrane	6
The sleeping bacterium: shedding light on the resuscitation mechanism	6
Quenching of G4-DNA intrinsic fluorescence by ligands	6
Correction to: Lipoic acid nanoforms based on phosphatidylcholine: production and characteristics	6
Structure and dynamics of pteridine reductase 1: the key phenomena relevant to enzyme function and drug design	6
Design of inhibitor peptide sequences based on the interfacial knowledge of the protein G-IgG crystallographic complex and their binding studies with IgG	6
Microfabricated cantilevers for parallelized cell-cell adhesion measurements	6
Crystal structure of 4-amino-5-hydroxymethyl-2-methyl pyrimidine phosphate kinase (HMPP kinase) from Thermus thermophilus HB8	5
Revealing the single-channel characteristics of OprD (OccAB1) porins from hospital strains of Acinetobacter baumannii	5
On the utility of microfluidic systems to study protein interactions: advantages, challenges, and applications	5
Molecular dynamics study of collective water vibrations in a DNA hydration shell	5
Rethinking the protein folding problem from a new perspective	5
Structural and functional characterization of Caenorhabditis elegans cyclic GMP-activated channel TAX-4 via molecular dynamics simulations	5
Amyloid fibril length distribution from dynamic light scattering data	5
Professor Emil Paleček: seven decades with electrodes and biomolecules at the Institute of Biophysics of the CAS	5
A comparative characterisation of commercially available lipid-polymer nanoparticles formed from model membranes	5
On the possibility of the existence of orienting hydrodynamic steering effects in the kinetics of receptor–ligand association	5