EMBO Journal

Papers
(The TQCC of EMBO Journal is 27. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-06-01 to 2025-06-01.)
ArticleCitations
Tunnelling nanotube formation is driven by Eps8/IRSp53‐dependent linear actin polymerization1065
Regulation of LRRK2 mRNA stability by ATIC and its substrate AICAR through ARE‐mediated mRNA decay in Parkinson's disease483
PGE2‐EP3 axis promotes brown adipose tissue formation through stabilization of WTAP RNA methyltransferase286
Convergent dopamine and ALK4 signaling to PCBP1 controls FosB alternative splicing and cocaine behavioral sensitization174
The phagosomal solute transporter SLC15A4 promotes inflammasome activity via mTORC1 signaling and autophagy restraint in dendritic cells171
SOX9 maintains human foetal lung tip progenitor state by enhancing WNT and RTK signalling168
Unbiased assessment of genome integrity and purging of adverse outcomes at the target locus upon editing of CD4+ T‐cells for the treatment of Hyper IgM1164
Nascent polypeptide within the exit tunnel stabilizes the ribosome to counteract risky translation155
Cancer‐associated mutations in VAV1 trigger variegated signaling outputs and T‐cell lymphomagenesis148
A multifunctional locus controls motor neuron differentiation through short and long noncoding RNAs131
Lipid metabolism: new twists to the Yin and Yang of PKM2 in cancer130
Cryo‐EM structure of the chain‐elongating E3 ubiquitin ligase UBR5126
A mitochondrial EglN1‐AMPKα axis drives breast cancer progression by enhancing metabolic adaptation to hypoxic stress124
PKM2‐TMEM33 axis regulates lipid homeostasis in cancer cells by controlling SCAP stability106
Diversity matters — extending sound intensity coding by inner hair cells via heterogeneous synapses102
The plant noncoding transcriptome: a versatile environmental sensor101
Brassinosteroid signals cooperate with katanin‐mediated microtubule severing to control stamen filament elongation100
Do we still need animals? Surveying the role of animal‐free models in Alzheimer’s and Parkinson’s disease research99
Mutation in protein disulfide isomerase A3 causes neurodevelopmental defects by disturbing endoplasmic reticulum proteostasis99
In vivo reduction of RAD51‐mediated homologous recombination triggers aging but impairs oncogenesis98
PrimPol‐mediated repriming facilitates replication traverse of DNA interstrand crosslinks96
TDAG51 promotes transcription factor FoxO1 activity during LPS‐induced inflammatory responses95
Presynaptic targeting of botulinum neurotoxin type A requires a tripartitePSG‐Syt1SV2plasma membrane nanocluster for synaptic vesicle entry93
High‐resolution analysis of the conformational transition of pro‐apoptotic Bak at the lipid membrane93
Distinct roles of α‐ and β‐tubulin polyglutamylation in controlling axonal transport and in neurodegeneration90
CROP: a retromer‐PROPPIN complex mediating membrane fission in the endo‐lysosomal system89
Torsin and NEP1R1‐CTDNEP1 phosphatase affect interphase nuclear pore complex insertion by lipid‐dependent and lipid‐independent mechanisms87
Single‐cell transcriptomics of LepR‐positive skeletal cells reveals heterogeneous stress‐dependent stem and progenitor pools85
A sterol‐PI(4)P exchanger modulates the Tel1/ATM axis of the DNA damage response85
The SMC5/6 complex recruits the PAF1 complex to facilitate DNA double‐strand break repair in Arabidopsis76
The lysosomal Ragulator complex activates NLRP3 inflammasome in vivo via HDAC675
Cardiolipin remodeling enables protein crowding in the inner mitochondrial membrane75
IDH2 stabilizes HIF‐1α‐induced metabolic reprogramming and promotes chemoresistance in urothelial cancer75
Bidirectional interplay between metabolism and epigenetics in hematopoietic stem cells and leukemia73
Eating your mitochondria—when too much of a good thing turns bad71
A network of small RNAs regulates sporulation initiation in Clostridioides difficile71
An extended Tudor domain within Vreteno interconnects Gtsf1L and Ago3 for piRNA biogenesis in Bombyx mori70
Uptake‐independent killing of macrophages by extracellular Mycobacterium tuberculosis aggregates70
Evolutionary adaptation of the protein folding pathway for secretability69
Structure of cytosine transport protein CodB provides insight into nucleobase‐cation symporter 1 mechanism69
CTCF binding modulates UV damage formation to promote mutation hot spots in melanoma67
ZZ domains keep cytosol to vacuole delivery whiZZing along66
Gut colonization by Bacteroides requires translation by an EF‐G paralog lacking GTPase activity65
EGFR signaling controls directionality of epithelial multilayer formation upon loss of cell polarity65
The glycine arginine‐rich domain of the RNA‐binding protein nucleolin regulates its subcellular localization65
Regulated splicing of large exons is linked to phase‐separation of vertebrate transcription factors63
cIAPs control RIPK1 kinase activity‐dependent and ‐independent cell death and tissue inflammation60
Single‐cell transcriptomics stratifies organoid models of metabolic dysfunction‐associated steatotic liver disease59
Sir3 heterochromatin protein promotes non‐homologous end joining by direct inhibition of Sae259
Pharmacological CDK4/6 inhibition reveals a p53‐dependent senescent state with restricted toxicity59
Interferon‐inducible phospholipids govern IFITM3‐dependent endosomal antiviral immunity56
Cristae formation is a mechanical buckling event controlled by the inner mitochondrial membrane lipidome55
Strigolactones promote plant freezing tolerance by releasing the WRKY41‐mediated inhibition of CBF/DREB1 expression55
The Hippo pathway drives the cellular response to hydrostatic pressure54
RZZ‐Spindly and CENP‐E form an integrated platform to recruit dynein to the kinetochore corona54
MARCH5‐dependent NLRP3 ubiquitination is required for mitochondrial NLRP3‐NEK7 complex formation and NLRP3 inflammasome activation53
Characterization of the REC114‐MEI4‐IHO1 complex regulating meiotic DNA double‐strand break formation53
The birth of a giant: evolutionary insights into the origin of auxin responses in plants53
DGAT1 activity synchronises with mitophagy to protect cells from metabolic rewiring by iron  depletion53
Dynamic “Cap”‐abilities of P‐bodies and the XRN1‐EDC4 axis52
PTEN deficiency exposes a requirement for an ARF GTPase module for integrin‐dependent invasion in ovarian cancer52
A conserved complex of microneme proteins mediates rhoptry discharge in Toxoplasma52
Dynamic EMT: a multi‐tool for tumor progression52
Autophagy power expands: fuse those cells!52
Structure of a bacterial ribonucleoprotein complex central to the control of cell envelope biogenesis52
Modified Messengers: flatworm stem cells and regeneration are guarded by RNA methylation52
Ribosome biogenesis factors—from names to functions52
The CTLA‐4 immune checkpoint protein regulates PD‐L1:PD‐1 interaction via transendocytosis of its ligand CD8052
Elp3‐mediated codon‐dependent translation promotes mTORC2 activation and regulates macrophage polarization52
Infection and transmission of SARS‐CoV‐2 depend on heparan sulfate proteoglycans51
LAMTOR1 inhibition of TRPML1‐dependent lysosomal calcium release regulates dendritic lysosome trafficking and hippocampal neuronal function51
Lineage commitment of dermal fibroblast progenitors is controlled by Kdm6b‐mediated chromatin demethylation50
Interactomes of SARS‐CoV‐2 and human coronaviruses reveal host factors potentially affecting pathogenesis50
ARF2‐PIF5 interaction controls transcriptional reprogramming in the ABS3‐mediated plant senescence pathway50
Assembly and function of the amyloid‐like translational repressor Rim4 is coupled with nutrient conditions50
Structure and mechanism of a eukaryotic ceramide synthase complex49
BAX inhibitor‐1 regulates autophagy by controlling the IRE1α branch of the unfolded protein response49
DRP1 interacts directly with BAX to induce its activation and apoptosis49
Quorum sensing governs collective dendritic cell activation in vivo48
Living a longer life: unique lessons from the naked mole‐rat blood system48
Dynamic regulation of mitotic ubiquitin ligase APC/C by coordinated Plx1 kinase and PP2A phosphatase action on a flexible Apc1 loop47
IκB kinase‐α coordinates BRD4 and JAK/STAT signaling to subvert DNA damage‐based anticancer therapy46
A rare human centenarian variant of SIRT6 enhances genome stability and interaction with Lamin A46
AKT2 reduces IFNβ1 production to modulate antiviral responses and systemic lupus erythematosus46
Immune surveillance of brain metastatic cancer cells is mediated by IFITM146
Circadian time‐ and sleep‐dependent modulation of cortical parvalbumin‐positive inhibitory neurons46
Shuffled ATG8 interacting motifs form an ancestral bridge between UFMylation and autophagy46
Histone retention preserves epigenetic marks during heat stress‐induced transcriptional memory in plants45
c‐Maf enforces cytokine production and promotes memory‐like responses in mouse and human type 2 innate lymphoid cells45
Phosphorylation of phase‐separated p62 bodies by ULK1 activates a redox‐independent stress response44
Die another day: phytosulfokine at the molecular trade‐off between growth and defense in plants44
PIF7‐mediated epigenetic reprogramming promotes the transcriptional response to shade in Arabidopsis44
Subcellular localization of Type VI secretion system assembly in response to cell–cell contact44
Cryo‐EM structure of the polyphosphate polymerase VTC reveals coupling of polymer synthesis to membrane transit43
Protein synthesis control in cancer: selectivity and therapeutic targeting43
C9orf72 ALS/FTD dipeptide repeat protein levels are reduced by small molecules that inhibit PKA or enhance protein degradation43
Cancer evolution: Darwin and beyond43
Exercise‐induced α‐ketoglutaric acid stimulates muscle hypertrophy and fat loss through OXGR1‐dependent adrenal activation42
Disease‐linked TDP‐43 hyperphosphorylation suppresses TDP‐43 condensation and aggregation42
DNA asymmetry promotes SUMO modification of the single‐stranded DNA‐binding protein RPA41
Extracellular vesicles from Zika virus‐infected cells display viral E protein that binds ZIKV‐neutralizing antibodies to prevent infection enhancement40
Stress‐dependent macromolecular crowding in the mitochondrial matrix40
Salicylic acid‐activated BIN2 phosphorylation of TGA3 promotes Arabidopsis PR gene expression and disease resistance40
Evidence for existence of an apoptosis‐inducing BH3‐only protein, sayonara, in Drosophila40
Coronaviral ORF6 protein mediates inter‐organelle contacts and modulates host cell lipid flux for virus production39
The Spo13/Meikin pathway confines the onset of gamete differentiation to meiosis II in yeast39
Plant YTHDF proteins are direct effectors of antiviral immunity against an N6‐methyladenosine‐containing RNA virus39
Endosome maturation links PI3Kα signaling to lysosome repopulation during basal autophagy39
Seeing eye to eye: photoreceptors employ nanotube‐like connections for material transfer39
LUBAC and NF‐κB trigger a nuclear response from mitochondria38
Reply to “An alternative miRISC targets a cancer‐associated coding sequence mutation in FOXL2”38
CRIP1 suppresses BBOX1‐mediated carnitine metabolism to promote stemness in hepatocellular carcinoma38
Mechanism and function of DNA replication‐independent DNA‐protein crosslink repair via the SUMO‐RNF4 pathway38
The cellular modifier MOAG‐4/SERF drives amyloid formation through charge complementation37
Hypophosphorylated pRb knock‐in mice exhibit hallmarks of aging and vitamin C‐preventable diabetes37
Single‐cell analysis of lymphatic endothelial cell fate specification and differentiation during zebrafish development37
R‐spondin signaling in the stomach: isthmal Lgr4 rules37
Gruffi: an algorithm for computational removal of stressed cells from brain organoid transcriptomic datasets37
Topoisomerase II poisons inhibit vertebrate DNA replication through distinct mechanisms36
Nix interacts with WIPI2 to induce mitophagy36
Extra centrosomes induce PIDD1‐mediated inflammation and immunosurveillance36
Stem cells “aclymatise” to regenerate the blood system36
TFEB‐dependent lysosome biogenesis is required for senescence36
The needs of a synapse—How local organelles serve synaptic proteostasis36
Synergistic prostaglandin E synthesis by myeloid and endothelial cells promotes fetal hematopoietic stem cell expansion in vertebrates36
DNA sensing via the cGAS/STING pathway activates the immunoproteasome and adaptive T‐cell immunity36
TECPR1 conjugates LC3 to damaged endomembranes upon detection of sphingomyelin exposure36
The nucleoporin Nup50 activates the Ran guanine nucleotide exchange factor RCC1 to promote NPC assembly at the end of mitosis35
Antitumor T‐cell function requires CPEB4‐mediated adaptation to chronic endoplasmic reticulum stress35
Multi‐modal adaptor‐clathrin contacts drive coated vesicle assembly35
A CRMP4‐dependent retrograde axon‐to‐soma death signal in amyotrophic lateral sclerosis35
PABP prevents the untimely decay of select mRNA populations in human cells35
Metabolic remodeling maintains a reducing environment for rapid activation of the yeast DNA replication checkpoint35
Binary organization of epidermal basal domains highlights robustness to environmental exposure34
E‐cadherin mediates apical membrane initiation site localisation duringde novopolarisation of epithelial cavities34
A critical period of prehearing spontaneous Ca2+ spiking is required for hair‐bundle maintenance in inner hair cells34
ER‐anchored CRTH2 antagonizes collagen biosynthesis and organ fibrosis via binding LARP634
Single‐cell dissection of cervical cancer reveals key subsets of the tumor immune microenvironment33
The eukaryotic translation initiation factor eIF4E reprograms alternative splicing33
Mammalian UPF3A and UPF3B can activate nonsense‐mediated mRNA decay independently of their exon junction complex binding33
Stress‐induced vesicular assemblies of dual leucine zipper kinase are signaling hubs involved in kinase activation and neurodegeneration33
Mitochondria and peroxisomes are NIXed for clearance33
The CRL4 DCAF1 cullin‐RING ubiquitin ligase is activated following a switch in oligomerization state33
A lipid hydrolase and a ubiquitin ligase play hide‐and‐seek in the ER membrane32
Macrophage mitochondrial bioenergetics and tissue invasion are boosted by an Atossa‐Porthos axis in Drosophila32
Inhibition of ATP synthase reverse activity restores energy homeostasis in mitochondrial pathologies32
Msps governs acentrosomal microtubule assembly and reactivation of quiescent neural stem cells32
Molecular basis of cross‐species ACE2 interactions with SARS‐CoV‐2‐like viruses of pangolin origin32
SHP‐1 dephosphorylates histone H2B to facilitate its ubiquitination during transcription32
Microglia‐synapse engulfment via PtdSer‐TREM2 ameliorates neuronal hyperactivity in Alzheimer's disease models32
Varicella‐Zoster virus ORF9 is an antagonist of the DNA sensor cGAS31
The cell cycle and cell size influence the rates of global cellular translation and transcription in fission yeast31
Order through destruction: how ER‐associated protein degradation contributes to organelle homeostasis31
Oligomerization‐driven MLKL ubiquitylation antagonizes necroptosis31
The intrinsically disordered CARDs‐Helicase linker in RIG‐I is a molecular gate for RNA proofreading31
Mammalian antiviral RNAi is on the move31
Acetate is a beneficial nutrient for E. coli at low glycolytic flux31
NALCN‐mediated sodium influx confers metastatic prostate cancer cell invasiveness31
ZAKβ is activated by cellular compression and mediates contraction‐induced MAP kinase signaling in skeletal muscle31
Structural and biochemical basis of interdependent FANCI‐FANCD2 ubiquitination31
Deciphering functional tumor states at single‐cell resolution30
Spatial and temporal control of mitochondrial H 2 O 2 release in intact human cells30
Caldendrin and myosin V regulate synaptic spine apparatus localization via ER stabilization in dendritic spines30
A salt stress‐activated GSO1‐SOS2‐SOS1 module protects the Arabidopsis root stem cell niche by enhancing sodium ion extrusion30
Cyclin D1 controls development of cerebellar granule cell progenitors through phosphorylation and stabilization of ATOH130
Splicing factor YBX1 regulates bone marrow stromal cell fate during aging30
ORP2 couples LDL‐cholesterol transport to FAK activation by endosomal cholesterol/PI(4,5)P2 exchange30
When yeast cells change their mind: cell cycle “Start” is reversible under starvation30
EZH2 inhibition stimulates repetitive element expression and viral mimicry in resting splenic B cells29
The cryo‐EM structure of the CENP‐A nucleosome in complex with ggKNL229
The TOR‐dependent phosphoproteome and regulation of cellular protein synthesis29
Hold the fold: how delayed folding aids protein secretion29
A sudden collapse: the disaggregation of amyloid fibres29
Local coordination of mRNA storage and degradation near mitochondria modulates C. elegans ageing29
Gut inflammation triggers C/EBPβ/δ‐secretase‐dependent gut‐to‐brain propagation of Aβ and Tau fibrils in Alzheimer’s disease29
Quorum sensing componentry opens new lines of communication29
The ribosomal chaperone NACA recruits PHD2 to cotranslationally modify HIF‐α29
Some viruses need to phase‐separate to replicate29
Hypoxia promotes osteogenesis by facilitating acetyl‐CoA‐mediated mitochondrial–nuclear communication29
Piwi–piRNA complexes induce stepwise changes in nuclear architecture at target loci28
Microglial PD‐1 stimulation by astrocytic PD‐L1 suppresses neuroinflammation and Alzheimer’s disease pathology28
Increased levels of mitochondrial import factor Mia40 prevent the aggregation of polyQ proteins in the cytosol28
MST2 methylation by PRMT5 inhibits Hippo signaling and promotes pancreatic cancer progression28
Maternal immune activation leads to defective brain blood vessels and intracerebral hemorrhages in male offspring28
Cellular responses to halofuginone reveal a vulnerability of the GCN2 branch of the integrated stress response28
Liquid–liquid phase separation underpins the formation of replication factories in rotaviruses28
TFEB and TFE3 control glucose homeostasis by regulating insulin gene expression27
Molecular and structural mechanisms of ZZ domain‐mediated cargo selection by Nbr127
Nse5/6 inhibits the Smc5/6 ATPase and modulates DNA substrate binding27
Disulfiram bolsters T‐cell anti‐tumor immunity through direct activation of LCK‐mediated TCR signaling27
An alternative UPF1 isoform drives conditional remodeling of nonsense‐mediated mRNA decay27
Fluc‐EGFP reporter mice reveal differential alterations of neuronal proteostasis in aging and disease27
Fuel oxidation under the control of mitochondrial shape and dynamics27
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