Biophysical Chemistry

Article	Citations
Intrinsic disorder and structural biology: Searching where the light isn't	68
Free energy landscape of wrapping of lipid nanocluster by polysaccharides	64
Editorial Board	60
Probing pharmaceutically important amino acids L-isoleucine and L-tyrosine Solubilities: Unraveling the solvation thermodynamics in diverse mixed solvent systems	49
Disordered regions tune order in chromatin organization and function	48
Molecular conversion of MIG6 hotspot-3 peptide from the nonbinder to a moderate binder of HER2 by rational design of an orthogonal interaction system at the HER2–peptide interface	44
In silico investigation on the mutational analysis of BRCA1-BARD1 RING domains and its effect on nucleosome recognition and ubiquitination	41
A detailed review of genetically encodable RFPs and far-RFPs and their applications in advanced super-resolution imaging techniques	39
The contrasting roles of co-solvents in protein formulations and food products	39
The role of hydrophobic patches of de novo designed MSI-78 and VG16KRKP antimicrobial peptides on fragmenting model bilayer membranes	30
Studies on stabilization of collagen using Cr-doped polydopamine complex	30
Interaction of gentamicin and gentamicin-AOT with poly-(lactide-co-glycolate) in a drug delivery system - density functional theory calculations and molecular dynamics simulation	29
Membrane-water partitioning – Tackling the challenges of poorly soluble drugs using chaotropic co-solvents	28
Coupling of conformation and CPD damage in nucleosomal DNA	26
Dimethyl sulfoxide (DMSO) is a stabilizing co-solvent for G-quadruplex DNA	25
Effect of cycloastragenol and punicalagin on Prp(106–126) and Aβ(25–35) oligomerization and fibrillizaton	21
Unveiling the mechanisms underlying photothermal efficiency of gold shell-isolated nanoparticles (AuSHINs) on ductal mammary carcinoma cells (BT-474)	20
The effect of various compounds on the COVID mechanisms, from chemical to molecular aspects	20
Editorial Board	20
PolyQ aggregation studied by model peptides with intrinsic tryptophan fluorophores	20
Potential allosteric sites captured in glycolytic enzymes via residue-based network models: Phosphofructokinase, glyceraldehyde-3-phosphate dehydrogenase and pyruvate kinase	18
Selective IR super-resolution imaging of β-keratins at the bulk or interface in feather detected by using a nonlinear optical process	17
Free energy simulations to understand the effect of Met → Ala mutations at positions 205, 206 and 213 on stability of human prion protein	17
Dietary polyphenols inhibit plasma protein arabinosylation: Biomolecular interaction of genistein and ellagic acid with serum albumins	17
Quantification of protein-protein interactions and activation dynamics: A new path to predictive biomarkers	16

How to evict HP1 from H3: Using a complex salt bridge	16
Investigation of serotonin-receptor interactions, stability and signal transduction pathways via molecular dynamics simulations	16
Protein folding in vitro and in the cell: From a solitary journey to a team effort	15
Structural aspects of the MHC expression control system	15
Charge transfer across biomembranes: A solution to the conundrum of high desolvation free energy penalty in ion transport	14
Arbidol targeting influenza virus A Hemagglutinin; A comparative study	14
The influence of N-alkyl chains in benzoyl-thiourea derivatives on urease inhibition: Soil studies and biophysical and theoretical investigations on the mechanism of interaction	14
The amyloidogenic peptide stretch in human tau, tau306–311 is a promising injectable hydrogelator	14
Computational pharmacology: New avenues for COVID-19 therapeutics search and better preparedness for future pandemic crises	14
Atomic insights into the inhibition of R3 domain of tau protein by epigallocatechin gallate, quercetin and gallic acid	14
smFRET study of rRNA dimerization at the peptidyl transfer center	14
Editorial Board	14
Differential effect of polyol and sugar osmolytes on the refolding of homologous alpha amylases: A comparative study	13
Editorial Board	13
Infrared spectrochemical findings on intermittent fasting-associated gross molecular modifications in rat myocardium	13
Editorial Board	13
Different behavior of Ferguson plot between agarose and polyacrylamide gels	13
Transient protonic capacitor: Explaining the bacteriorhodopsin membrane experiment of Heberle et al. 1994	13
C-terminal determinants for RNA binding motif 7 protein stability and RNA recognition	12
Elucidating the conformational behavior and membrane-destabilizing capability of the antimicrobial peptide ecPis-4s	12
Molecular insights into the interaction of angiotensin I-converting enzyme (ACE) inhibitors and HEXXH motif	12
Interdomain interactions in Grb2 revealed by the conformational stability and CD28 binding analysis	12
Elucidation of benzene sulfonamide derivative binding at a novel interprotomer pocket of wild type and mutants of coxsackievirus B3 viral capsid using molecular dynamics simulations and density functi	12
Hydrogen‑deuterium exchange mass spectrometry to study interactions and conformational changes of proteins in paints	12
Decoding SARS-CoV-2 variants: Mutations, viral stability, and breakthroughs in vaccines and therapies	11
DODAB vesicles containing lysophosphatidylcholines: The relevance of acyl chain saturation on the membrane structure and thermal properties	11
Biochemical and biophysical properties of a recombinant serine peptidase from Purpureocillium lilacinum	11
Aβ42 fibril and non-fibril oligomers characterization using a nanopipette	11
Challenges for design of aggregation-resistant variants of granulocyte colony-stimulating factor	11
Discovery of TGFBR1 (ALK5) as a potential drug target of quercetin glycoside derivatives (QGDs) by reverse molecular docking and molecular dynamics simulation	11
Exploring the aggregation of amyloid-β 42 through Monte Carlo simulations	11
Isolated auto-citrullinated regions of PADI4 associate to the intact protein without altering their disordered conformation	11
Exploring the physicochemical properties of the integration of Tristearoyl uridine in Langmuir monolayers: An approach to cell membrane modeling for prodrugs	10
Conformational changes of α-helical peptides with different hydrophobic residues induced by metal-ion binding	10
A bactericide peptide changing the static and dilatational surface elasticity properties of zwitterionic lipids at the air-water interface: Relationship with the thermodynamic, structural and morpholo	10
A deep learning framework for enhancer prediction using word embedding and sequence generation	10
Probing the ligand-binding pocket of recombinant β-lactoglobulin: Calorimetric and spectroscopic studies	10
Chemical modifications to mRNA nucleobases impact translation elongation and termination	10
Characterization of plasmatic proteins adsorption on poly(styrene sodium sulfonate) functionalized silicone surfaces	10
NMR and EPR study of the interaction of tris(3-hydroxy-4-pyridinonato) Ga(III) complexes with liposomes that mimic plant membranes	10
Assessing the DNA structural integrity via selective annihilation of Watson-Crick hydrogen bonds: Insights from molecular dynamics simulations	10
Sugar distributions on gangliosides guide the formation and stability of amyloid-β oligomers	9
Self-assembling of coiled-coil peptides into virus-like particles: Basic principles, properties, design, and applications with special focus on vaccine design and delivery	9
Organic solvents aggregating and shaping structural folding of protein, a case study of the protease enzyme	9
Oxygen vacancy assisted condensation of DNA molecule observed on ZnO thin film	9
Modeling of enzymatic activity of free β-glucosidase from palm weevil, Rhynchophorus palmarum Linn. (Coleoptera: Curculionidae) larvae: Effects of pH and temperature	9
Protonic conductor: Explaining the transient “excess protons” experiment of Pohl's group 2012	9
Binding properties of recombinant LDL receptor and LOX-1 receptor to LDL measured using bio-layer interferometry and atomic force microscopy	9
Structural and mechanical behavior of type-I collagen fibrils in presence of induced electrostatic interactions through ionic liquids	9
The membrane-binding bacterial toxin long direct repeat D inhibits protein translation	9

Structural dynamics of a designed peptide pore under an external electric field	8
Interaction of detergent with complex mimics of bacterial membranes	8
Crystal structure analysis of pyrrolidone carboxyl peptidase from Thermus thermophilus	8
Simulated pressure changes in LacI suggest a link between hydration and functional conformational changes	8
Excitation energy migration to study protein oligomerization and amyloid formation	8
Editorial Board	8
Exploring the binding kinetics and behaviors of self-aggregated beta-amyloid oligomers to phase-separated lipid rafts with or without ganglioside-clusters	8
Computational design of a β-wrapin's N-terminal domain with canonical and non-canonical amino acid modifications mimicking curcumin's proposed inhibitory function	8
Salt-dependent passive adsorption of IgG1κ-type monoclonal antibodies on hydrophobic microparticles	8
Oxidative damage to βL-crystallin in vitro by iron compounds formed in physiological buffers	8
Analyzing the interaction of Helicobacter pylori GAPDH with host molecules and hemin: Inhibition of hemin binding	8
A pipeline to evaluate the discrepant interactions between typical nitrogenous disinfection byproduct haloacetonitriles and human hemoglobin	8
Fifty-hertz magnetic fields induce DNA damage through activating mPTP associated mitochondrial permeability transition in senescent human fetal lung fibroblasts	8
The role of nonlinear axonal membrane capacitance in modulating ion channel cooperativity in action potential dynamics: Studies on Hodgkin-Huxley's model	8
The B-box1 domain of PML mediates SUMO E2-E3 complex formation through an atypical interaction with UBC9	8
Interaction of Myrsinoic acid a with biomembrane models: Differential effects on DPPC and DPPS properties revealed by surface rheology and vibrational spectroscopy	8
Biophysical significance of fluorescence spectroscopy in deciphering nucleic acid dynamics: From fundamental to recent advancements	8
Editorial Board	8
The scientific adventures of Richard Epand	8
A combination of structure-based virtual screening and experimental strategies to identify the potency of caffeic acid ester derivatives as SARS-CoV-2 3CLpro inhibitor from an in-house database	7
Editorial Board	7
The composition of fusogenic lipid mixtures at the air-water modulates the physicochemical properties changes upon interaction with lysicamine	7
Isolation of Amyloid-like Protein Aggregates (APA) from white bread and their characterisation	7
Differential effects of DTT on HEWL amyloid fibrillation and fibril morphology at different pH	7
Editorial Board	7
Luteoloside inhibits Aβ1–42 fibrillogenesis, disintegrates preformed fibrils, and alleviates amyloid-induced cytotoxicity	7
Tunnel connects lipid bilayer to occluded odorant-binding site of insect olfactory receptor	7
Editorial Board	7
ROC-guided virtual screening, molecular dynamics simulation, and bioactivity validation assessment Z195914464 as a 3CL Mpro inhibitor	7
Effects of curcumin in the interaction with cardiolipin-containg lipid monolayers and bilayers	7
Influence of amphotericin B on the DPPC/DOPC/sterols mixed monolayer in the presence of calcium ions	7
Editorial Board	7
Editorial Board	7
Biotransformation of phenytoin in the electrochemically-driven CYP2C19 system	7
Editorial Board	7
pH dependence of C•A, G•A and A•A mismatches in the stem of precursor microRNA-31	7
Thermodynamics of oligomerization and Helix-to-sheet structural transition of amyloid β-protein on anionic phospholipid vesicles	7
How to best estimate the viscosity of lipid bilayers	7
Molecular dynamics of SARS-CoV-2 omicron variants from Philippine isolates against hesperidin as spike protein inhibitor	7
Equilibrium solubility, solvent effect, solvation and thermodynamic modeling of 1, 3-dinitropyrazole in solutions of methyl alcohol /ethyl alcohol + water	6
Identification of determinants of lipid and ion transport in TMEM16/anoctamin proteins through a Bayesian statistical analysis	6
Exploring the solubility and intermolecular interactions of biologically significant amino acids l-serine and L-cysteine in binary mixtures of H2O + DMF, H2O + DMSO and H2O + ACN in temperature range	6
Identification of the therapeutic potential of novel TIGIT/PVR interaction blockers based advanced computational techniques and experimental validation	6
Secondary structure of peptides mimicking the Gly-rich regions of major ampullate spidroin protein 1 and 2	6
Metal-binding and folding thermodynamics of Escherichia coli ribonuclease HI related to its catalytic function	6
The role of the lipid environment in the activity of G protein coupled receptors	6
Editorial Board	6
Combined effect of the head groups and alkyl chains of archaea lipids when interacting with bacteriorhodopsin	6
Mutations in asparaginase II from E. coli and implications for inactivation and PEGylation	6
Proposal of novel natural inhibitors of severe acute respiratory syndrome coronavirus 2 main protease: Molecular docking and ab initio fragment molecular orbital calculations	6
An interpretable machine learning method for homo-trimeric protein interface residue-residue interaction prediction	6
A semiempirical and machine learning approach for fragment-based structural analysis of non-hydroxamate HDAC3 inhibitors	6
Richer than previously probed: An application of 1H NMR reveals one hundred metabolites using only fifty microliter serum	6
Probing and gauging of D-Penicillamine xenobiotics in hepatic Wilson disease patients	6
Liposomes encapsulating artificial cytosol as drug delivery system	6
The effect of human serum albumin glycation on the binding of antidiabetic agent-exenatide; the multispectroscopic studies. Part II	6
Evidence of the different effect of mercury and cadmium on the hIAPP aggregation process	6
Reversible and irreversible mitochondrial swelling in vitro	6
Targeting hydrophobicity in biofilm-associated protein (Bap) as a novel antibiofilm strategy against Staphylococcus aureus biofilm	6
Effect of partial O-methylation in dehydrodieugenol on its antitrypanosomal activity - correlation with the toxicity using cell membrane models	6
Salvianolic acid B prevents the amyloid transformation of A53T mutant of α-synuclein	6
Editorial Board	5
Allostery, and how to define and measure signal transduction	5
Nearest-neighbour parametrization of DNA single, double and triple mismatches at low sodium concentration	5
Affinity of aromatic amino acid side chains in amino acid solvents	5
Conformational stability and order of Hoogsteen base pair induced by protein binding	5
Editorial Board	5
pH-equilibration of human hair: Kinetics and pH-dependence of the partition ratios for H − and OH -ions based on a Freundlich isotherm	5
Cationic liposomes as carriers of natural compounds from plant extract	5
Structural modeling, energetic analysis and molecular design of a π-stacking system at the complex interface of pediatric respiratory syncytial virus nucleocapsid with the C-terminal peptide of phosph	5
The influence of pH on the structure and stability of the Grb2 dimer reveals changes in the inter-domain and molecular interaction: Could it be a modulation mechanism?	5
Copper(II) enhances the antibacterial activity of nitroxoline against MRSA by promoting aerobic glycolysis	5
Urineprint of high-altitude: Insights from analyses of urinary biomarkers and bio-physical-chemical features of extracellular vesicles	5
Hydrolysis rate constants of ATP determined in situ at elevated temperatures	5
Aggregation and partitioning of amyloid peptide fragments in the presence of a lipid bilayer: A coarse grained molecular dynamics study	5
In silico analysis of aptamer-RNA conjugate interactions with human transferrin receptor	5
Influence of docosahexaenoic acid on the interfacial behavior of cholesterol-containing lipid membranes: Interactions with small amphiphiles and hydration properties	5
Unveiling theranostic potential: Insights into cell-free microRNA-protein interactions	5
Membrane fusion of phospholipid bilayers under high pressure: Spherical and irreversible growth of giant vesicles	5
A computational evaluation of targeted oxidation strategy (TOS) for potential inhibition of SARS-CoV-2 by disulfiram and analogues	5

In silico drug discovery for a complex immunotherapeutic target - human c-Rel protein	5
Effects of an external static EF on the conformational transition of 5-HT1A receptor: A molecular dynamics simulation study	5
Lipid domain boundary triggers membrane damage and protein folding of human islet amyloid polypeptide in the early pathogenesis of amyloid diseases	5
Interaction mechanism of a cysteine protease inhibitor, odanacatib, with human serum albumin: In vitro and bioinformatics studies	5
Deterministic error propagation in ITC: Revealing multi-fold errors in Kd values under standard conditions	5
A benchmark for evaluation of structure-based online tools for antibody-antigen binding affinity	5
Osmotic stress studies of G-protein-coupled receptor rhodopsin activation	5
Force-induced unzipping of DNA in the presence of solvent molecules	5
The pH dependence of emulsifying properties for glutathione disulfide at oil-water interfaces	5
Mechanistic and biophysical insight into the inhibitory and disaggregase role of antibiotic moxifloxacin on human lysozyme amyloid formation	5
Structural packing of the non-amyloid component core domain in α-synuclein plays a role in the stability of the fibrils	5
Asymmetrical interactions between nanoparticles and proteins arising from deformation upon adsorption to surfaces	5
Analyzing of L-tryptophan thermodynamics and its solubility in aqueous acetonitrile blends at diverse temperatures	5
Biocementation of soils of different surface chemistries via enzyme induced carbonate precipitation (EICP): An integrated laboratory and molecular dynamics study	5
Inhibitory effects of carbon quantum dots towards hen egg white lysozyme amyloidogenesis through formation of a stable protein complex	4
Improved analysis of NMR chemical shift perturbations through an error estimation method	4
Editorial Board	4
Dependence of cell's membrane potential on extracellular voltage observed in Chara globularis	4
Editorial Board	4
Theoretical investigation of the electronic absorption spectra of the glucosides	4
A surprisingly simple three-state generic process for reversible protein denaturation by trifluoroethanol	4
The food and pharmaceutical additive benzoic acid induces amyloid fibrillation of an intrinsically disordered protein	4
Quantum mechanics in ion channel	4
Trp residues near peptide termini enhance the membranolytic activity of cationic amphipathic α-helices	4
Effect of a U:G mispair on the water around DNA	4
Interaction process behind the strong stabilization of G-quadruplexes by alkaloid fagaronine	4
Non-micellar ganglioside GM1 induces an instantaneous conformational change in Aβ42 leading to the modulation of the peptide amyloid-fibril pathway	4
Interaction of negatively and positively capped gold nanoparticle with different lipid model membranes	4
Nanoscale intracellular ultrastructures affected by osmotic pressure using small-angle X-ray scattering	4
Editorial Board	4
Analysis of solid-state NMR data facilitated by MagRO_NMRViewJ with Graph_Robot: Application for membrane protein and amyloid.	4
Composition of raft-like cell membrane microdomains resistant to styrene-maleic acid copolymer (SMA) solubilization	4
Amyloids, amorphous aggregates and assemblies of peptides – Assessing aggregation	4
Phenolic fractions of Heliotropium Bacciferum inhibit human insulin aggregation and protect against amyloid-induced cytotoxicity: Structural and biophysical analysis	4
The processing intermediate of human amylin, pro-amylin(1–48), has in vivo and in vitro bioactivity	4
Bilirubin nanotechnology: An innovative approach in biomedicine	4
Decoding the dynamics of BCL9 triazole stapled peptide	4
Positive cooperativity during Azotobacter vinelandii nitrogenase-catalyzed acetylene reduction	4
Degree–based topological indices, NMR chemical shifts, chemical reactivity, molecular dynamics and DFT analysis of 1,4-Methanoazulene-9-methanol, Decahydro-4,8,8-trimethyl-, [1S-(1α,3aβ,4α,8aβ,9R)]	4
Binding between an amine cationic surfactant and DNA and surface properties of the resultant aggregates	4
Protein–lipid acyl chain interactions: Depth-dependent changes of segmental mobility of phospholipid in contact with bacteriorhodopsin	4
Photophysical and structural aspects of poly-L-tryptophan: π−π	4
Effects of perturbation of the hydrophobic coiled-coil core on the thermal transition process of α-helical self-assembling peptides with α-β conformational transition capability	4
Radiation-induced alterations in the dielectric features of irradiated tissues	4
Spectroscopy studies of interaction hypericin with an anti-cancer therapy drug doxorubicin	4
Amyloid-like aggregation of bovine serum albumin at physiological temperature induced by cross-seeding effect of HEWL amyloid aggregates	4
Studies on the binding of wedelolactone to human serum albumin with multi-spectroscopic analysis, molecular docking and molecular dynamic simulation	3
Biomimetic design of inhibitors of immune checkpoint LILRB4	3
An Atlas of the base inter-RNA stacks involved in bacterial translation	3
Palmitoylation modifies transmembrane adaptor protein PAG for ordered lipid environment: A molecular dynamics simulation study	3
Monte Carlo molecular simulation of solution and surface-bound DNA hybridization of short oligomers at varying surface densities	3
Detection of bacteriorhodopsin trimeric rotation at thermal phase transitions of purple membrane in suspension	3
Erratum to “Isolated auto-citrullinated regions of PADI4 associate to the intact protein without altering their disordered conformation” [Biophysical Chemistry …(2024) …]	3
Calcium ions do not influence the Aβ(25–35) triggered morphological changes of lipid membranes	3
Citrullination of adenosine deaminase impairs its binding to dipeptidyl peptidase IV	3
How procyanidin C1 sticks to collagen: The role of proline rings	3
Decrypting the interaction pattern of Piperlongumine with calf thymus DNA and dodecamer d(CGCGAATTCGCG)2 B-DNA: Biophysical and molecular docking analysis	3
Pomegranate peel, chokeberry leaves and Ironwort extract as novel natural inhibitors of amylin aggregation and cellular toxicity in pancreatic β cells	3
Relevance of ceramide 1-phosphate domain formation in activation of cytosolic phospholipase A2	3
Modulating the pH-activity profile of the glucose isomerase from Thermotoga marimita by introducing positively and negatively charged residues	3
Structural dynamics of a DNA-binding protein analyzed using diffracted X-ray tracking	3
Neuroinflammation induced by amyloid-forming pancreatic amylin: Rationale for a mechanistic hypothesis	3
Molecular insights into nanoplastics-peptides binding and their interactions with the lipid membrane	3
A rhein-huprine hybrid protects erythrocyte membrane integrity against Alzheimer’s disease related Aβ(1-42) peptide	3
Decoding the interaction of an imidazo-pyrimidine derivative with serum proteins: Spectroscopic, computational and structure-activity relationship analysis	3
Polymyxin B accelerates the α-synuclein aggregation	3
Potential differentiation of successive SARS-CoV-2 mutations by RNA: DNA hybrid analyses	3
Characterisation of collagen type I matrices for pathophysiologically relevant spatial cancer cell cultures	3
A theoretical study on binding and stabilization of galactose and novel galactose analogues to the human α-galactosidase A variant causing Fabry disease	3
Dynamic membrane interaction and amyloid fibril formation of glucagon, melittin and human calcitonin	3
The native state conformational heterogeneity in the energy landscape of protein folding	3
Investigating the role of axonal ion channel cooperativity in action potential dynamics: Studies on Hodgkin-Huxley's model	3
Cholesterol modulates the interaction of sodium salt with negatively charged phospholipid membrane	3
The growth of microbial cultures complies with the laws of thermodynamics	3
Effect of ergosterol or cholesterol on the morphology and dynamics of the POPC/sphingomyelin bilayer	3
DNA groove binder and significant cytotoxic activity on human colon cancer cells: Potential of a dimeric zinc (II) phthalocyanine derivative	3
A large HIV gp41 construct with trimer-of-hairpins structure exhibits V2E mutation-dominant attenuation of vesicle fusion and helicity very similar to V2E attenuation of HIV fusion and infection and s	3
Understanding the conformational changes in the influenza B M2 ion channel at various protonation states	3
Intrinsically disordered proteins/regions and insight into their biomolecular interactions	3
Thermally stabilized chondroitin sulfate-hemoglobin nanoparticles and their interaction with bioactive compounds	3
Serum albumin mitigated perfluorooctane sulfonate-induced cytotoxicity by affecting the cellular responses	3
Kinetic and thermodynamic insights into the interaction of Aβ1–42 with astaxanthin and aggregation behavior of Aβ1–42: Surface plasmon resonance, microscopic, and molecular docking studies	3
Energy landscapes for proteins described by the UNRES coarse-grained potential	3
Editorial Board	3
Editorial Board	3
Systematic molecular profiling of non-native N6-substitution effects on m6A binding to the YTH domains of human RNA m6A readers in diabetes	3
Alpha-synuclein phosphorylation induces amyloid conversion via enhanced electrostatic bridging: Insights from molecular modeling of the full-length protein	3
Editorial Board	3
Topical ocular administration using thermosensitive chitosan-glycerophosphate-PRP hydrogels for improved ocular bioavailability	3
Sodium fusidate prevents protein aggregation of silk fibroin and offers new perspectives for human lens material disaggregation	3
An evidence of pores in phospholipid membrane induced by an antimicrobial peptide NK-2	3
The effect of methylated phosphatidylethanolamine derivatives on the ionization properties of signaling phosphatidic acid	3
Nuclease resistance and protein recognition properties of DNA and hybrid PNA-DNA four-way junctions	3
Editorial Board	3
Membrane lateral organization from potential energy disconnectivity graph	3