Biophysical Chemistry

Papers
(The median citation count of Biophysical Chemistry is 2. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2022-05-01 to 2026-05-01.)
ArticleCitations
Editorial Board65
The Boltzmann principle in the theory of enzymatic catalysis and conformational mobility of biomolecules42
Molecular insights into the transport and toxicity of 6-PPD: Interactions with human serum albumin and alpha-glucosidase38
Studies on stabilization of collagen using Cr-doped polydopamine complex31
Coupling of conformation and CPD damage in nucleosomal DNA28
Molecular docking and density functional theory studies of flavonoids of Holy basil plant against COX-2 enzyme25
Intrinsic disorder and structural biology: Searching where the light isn't22
Editorial Board21
Free energy landscape of wrapping of lipid nanocluster by polysaccharides20
Effect of cycloastragenol and punicalagin on Prp(106–126) and Aβ(25–35) oligomerization and fibrillizaton19
The contrasting roles of co-solvents in protein formulations and food products19
Unveiling the mechanisms underlying photothermal efficiency of gold shell-isolated nanoparticles (AuSHINs) on ductal mammary carcinoma cells (BT-474)18
In silico investigation on the mutational analysis of BRCA1-BARD1 RING domains and its effect on nucleosome recognition and ubiquitination18
A detailed review of genetically encodable RFPs and far-RFPs and their applications in advanced super-resolution imaging techniques18
Interaction of gentamicin and gentamicin-AOT with poly-(lactide-co-glycolate) in a drug delivery system - density functional theory calculations and molecular dynamics simulation18
The role of hydrophobic patches of de novo designed MSI-78 and VG16KRKP antimicrobial peptides on fragmenting model bilayer membranes18
Probing pharmaceutically important amino acids L-isoleucine and L-tyrosine Solubilities: Unraveling the solvation thermodynamics in diverse mixed solvent systems17
Investigation of serotonin-receptor interactions, stability and signal transduction pathways via molecular dynamics simulations16
Editorial Board15
Selective IR super-resolution imaging of β-keratins at the bulk or interface in feather detected by using a nonlinear optical process15
How to evict HP1 from H3: Using a complex salt bridge15
PolyQ aggregation studied by model peptides with intrinsic tryptophan fluorophores15
Structural aspects of the MHC expression control system15
The amyloidogenic peptide stretch in human tau, tau306–311 is a promising injectable hydrogelator14
Computational pharmacology: New avenues for COVID-19 therapeutics search and better preparedness for future pandemic crises14
The effect of various compounds on the COVID mechanisms, from chemical to molecular aspects14
Corrigendum to “Effect of disialoganglioside GD3 on the subgel, gel and fluid phases of cationic DODAB vesicles” [biophysical chemistry 326 (2025) 107503]14
The influence of N-alkyl chains in benzoyl-thiourea derivatives on urease inhibition: Soil studies and biophysical and theoretical investigations on the mechanism of interaction14
Editorial Board14
Infrared spectrochemical findings on intermittent fasting-associated gross molecular modifications in rat myocardium14
Protein folding in vitro and in the cell: From a solitary journey to a team effort13
Editorial Board13
Atomic insights into the inhibition of R3 domain of tau protein by epigallocatechin gallate, quercetin and gallic acid13
Spectroscopic, quantum chemical, and antibacterial studies on novel push–pull chromophore 3-(4-nitrophenyl)-3H-quinazolin-4-one13
Study of neurotransmitter dopamine interaction with DNA by electrochemical and spectroscopic methods13
Transient protonic capacitor: Explaining the bacteriorhodopsin membrane experiment of Heberle et al. 199412
Elucidating the conformational behavior and membrane-destabilizing capability of the antimicrobial peptide ecPis-4s12
Editorial Board11
Biochemical and biophysical properties of a recombinant serine peptidase from Purpureocillium lilacinum11
Editorial Board11
Decoding SARS-CoV-2 variants: Mutations, viral stability, and breakthroughs in vaccines and therapies11
DODAB vesicles containing lysophosphatidylcholines: The relevance of acyl chain saturation on the membrane structure and thermal properties11
Different behavior of Ferguson plot between agarose and polyacrylamide gels11
Elucidation of benzene sulfonamide derivative binding at a novel interprotomer pocket of wild type and mutants of coxsackievirus B3 viral capsid using molecular dynamics simulations and density functi11
Next-generation antibacterial cryogels: Berberine-infused smart membranes with molecular docking-guided targeting of MRSA and MDR E. coli11
C-terminal determinants for RNA binding motif 7 protein stability and RNA recognition10
Binding properties of recombinant LDL receptor and LOX-1 receptor to LDL measured using bio-layer interferometry and atomic force microscopy10
Aβ42 fibril and non-fibril oligomers characterization using a nanopipette10
A deep learning framework for enhancer prediction using word embedding and sequence generation10
The effect of lipid saturation on the formation of styrene maleic acid lipid nanoparticles10
NMR and EPR study of the interaction of tris(3-hydroxy-4-pyridinonato) Ga(III) complexes with liposomes that mimic plant membranes10
Isolated auto-citrullinated regions of PADI4 associate to the intact protein without altering their disordered conformation10
Hydrogen‑deuterium exchange mass spectrometry to study interactions and conformational changes of proteins in paints10
Fifty-hertz magnetic fields induce DNA damage through activating mPTP associated mitochondrial permeability transition in senescent human fetal lung fibroblasts10
Characterization of plasmatic proteins adsorption on poly(styrene sodium sulfonate) functionalized silicone surfaces10
Exploring the aggregation of amyloid-β 42 through Monte Carlo simulations10
Interdomain interactions in Grb2 revealed by the conformational stability and CD28 binding analysis10
Exploring the physicochemical properties of the integration of Tristearoyl uridine in Langmuir monolayers: An approach to cell membrane modeling for prodrugs9
The membrane-binding bacterial toxin long direct repeat D inhibits protein translation9
Editorial Board9
Hydration parameters (h values) of hydrophobic l-amino acids estimated using the viscosity B-coefficients and partial molar volumes, and the low sensitivity of macromolecular interactions of xanthan g9
Chemical modifications to mRNA nucleobases impact translation elongation and termination9
Organic solvents aggregating and shaping structural folding of protein, a case study of the protease enzyme9
Self-assembling of coiled-coil peptides into virus-like particles: Basic principles, properties, design, and applications with special focus on vaccine design and delivery9
Protonic conductor: Explaining the transient “excess protons” experiment of Pohl's group 20129
Structural and mechanical behavior of type-I collagen fibrils in presence of induced electrostatic interactions through ionic liquids9
Sugar distributions on gangliosides guide the formation and stability of amyloid-β oligomers9
The B-box1 domain of PML mediates SUMO E2-E3 complex formation through an atypical interaction with UBC98
Interaction of Myrsinoic acid a with biomembrane models: Differential effects on DPPC and DPPS properties revealed by surface rheology and vibrational spectroscopy8
Crystal structure analysis of pyrrolidone carboxyl peptidase from Thermus thermophilus8
Oxidative damage to βL-crystallin in vitro by iron compounds formed in physiological buffers8
Interaction of detergent with complex mimics of bacterial membranes8
A combination of structure-based virtual screening and experimental strategies to identify the potency of caffeic acid ester derivatives as SARS-CoV-2 3CLpro inhibitor from an in-house database8
The scientific adventures of Richard Epand8
A pipeline to evaluate the discrepant interactions between typical nitrogenous disinfection byproduct haloacetonitriles and human hemoglobin8
The role of nonlinear axonal membrane capacitance in modulating ion channel cooperativity in action potential dynamics: Studies on Hodgkin-Huxley's model8
Analyzing the interaction of Helicobacter pylori GAPDH with host molecules and hemin: Inhibition of hemin binding8
Local optical probing of proteins of various sizes and charges with FITC label8
Simulated pressure changes in LacI suggest a link between hydration and functional conformational changes8
Computational design of a β-wrapin's N-terminal domain with canonical and non-canonical amino acid modifications mimicking curcumin's proposed inhibitory function8
Structural dynamics of a designed peptide pore under an external electric field8
Biophysical significance of fluorescence spectroscopy in deciphering nucleic acid dynamics: From fundamental to recent advancements8
Luteoloside inhibits Aβ1–42 fibrillogenesis, disintegrates preformed fibrils, and alleviates amyloid-induced cytotoxicity7
Thermodynamics of oligomerization and Helix-to-sheet structural transition of amyloid β-protein on anionic phospholipid vesicles7
ROC-guided virtual screening, molecular dynamics simulation, and bioactivity validation assessment Z195914464 as a 3CL Mpro inhibitor7
Tunnel connects lipid bilayer to occluded odorant-binding site of insect olfactory receptor7
Molecular dynamics of SARS-CoV-2 omicron variants from Philippine isolates against hesperidin as spike protein inhibitor7
The role of the lipid environment in the activity of G protein coupled receptors7
Editorial Board7
Biotransformation of phenytoin in the electrochemically-driven CYP2C19 system7
Exploring the binding kinetics and behaviors of self-aggregated beta-amyloid oligomers to phase-separated lipid rafts with or without ganglioside-clusters7
Editorial Board7
Secondary structure of peptides mimicking the Gly-rich regions of major ampullate spidroin protein 1 and 27
Differential effects of DTT on HEWL amyloid fibrillation and fibril morphology at different pH7
RufO, a cytochrome P450 (CYP) enzyme, recognition to putative substrates and a redox partner: Binding and structural insights7
Isolation of Amyloid-like Protein Aggregates (APA) from white bread and their characterisation7
Effects of curcumin in the interaction with cardiolipin-containg lipid monolayers and bilayers7
Editorial Board7
Editorial Board7
Identification of the therapeutic potential of novel TIGIT/PVR interaction blockers based advanced computational techniques and experimental validation7
The composition of fusogenic lipid mixtures at the air-water modulates the physicochemical properties changes upon interaction with lysicamine7
Targeting hydrophobicity in biofilm-associated protein (Bap) as a novel antibiofilm strategy against Staphylococcus aureus biofilm6
Effect of partial O-methylation in dehydrodieugenol on its antitrypanosomal activity - correlation with the toxicity using cell membrane models6
Cationic liposomes as carriers of natural compounds from plant extract6
Probing and gauging of D-Penicillamine xenobiotics in hepatic Wilson disease patients6
Effects of an external static EF on the conformational transition of 5-HT1A receptor: A molecular dynamics simulation study6
pH-equilibration of human hair: Kinetics and pH-dependence of the partition ratios for H − and OH -ions based on a Freundlich isotherm6
Editorial Board6
Asymmetrical interactions between nanoparticles and proteins arising from deformation upon adsorption to surfaces6
Mutations in asparaginase II from E. coli and implications for inactivation and PEGylation6
A semiempirical and machine learning approach for fragment-based structural analysis of non-hydroxamate HDAC3 inhibitors6
Metal-binding and folding thermodynamics of Escherichia coli ribonuclease HI related to its catalytic function6
Analyzing of L-tryptophan thermodynamics and its solubility in aqueous acetonitrile blends at diverse temperatures6
Richer than previously probed: An application of 1H NMR reveals one hundred metabolites using only fifty microliter serum6
Structural packing of the non-amyloid component core domain in α-synuclein plays a role in the stability of the fibrils6
Structural and functional insights into Vitamin D receptor mutations: An in-silico investigation of polymorphism-induced resistance6
A hybrid deep learning framework for accurate N6,2′-O-Dimethyladenosine site prediction6
Editorial Board6
The effect of human serum albumin glycation on the binding of antidiabetic agent-exenatide; the multispectroscopic studies. Part II6
Backbone equilibrium in mismatched DNA influenced by solution conditions6
Identification of determinants of lipid and ion transport in TMEM16/anoctamin proteins through a Bayesian statistical analysis6
Editorial Board6
Evidence of the different effect of mercury and cadmium on the hIAPP aggregation process6
Salvianolic acid B prevents the amyloid transformation of A53T mutant of α-synuclein6
Mechanistic and biophysical insight into the inhibitory and disaggregase role of antibiotic moxifloxacin on human lysozyme amyloid formation6
Biocementation of soils of different surface chemistries via enzyme induced carbonate precipitation (EICP): An integrated laboratory and molecular dynamics study6
Structural modeling, energetic analysis and molecular design of a π-stacking system at the complex interface of pediatric respiratory syncytial virus nucleocapsid with the C-terminal peptide of phosph6
Equilibrium solubility, solvent effect, solvation and thermodynamic modeling of 1, 3-dinitropyrazole in solutions of methyl alcohol /ethyl alcohol + water6
Combined effect of the head groups and alkyl chains of archaea lipids when interacting with bacteriorhodopsin6
Exploring the solubility and intermolecular interactions of biologically significant amino acids l-serine and L-cysteine in binary mixtures of H2O + DMF, H2O + DMSO and H2O + ACN in temperature range 6
Osmotic stress studies of G-protein-coupled receptor rhodopsin activation5
Nearest-neighbour parametrization of DNA single, double and triple mismatches at low sodium concentration5
Hydrolysis rate constants of ATP determined in situ at elevated temperatures5
Lipid domain boundary triggers membrane damage and protein folding of human islet amyloid polypeptide in the early pathogenesis of amyloid diseases5
Effects of perturbation of the hydrophobic coiled-coil core on the thermal transition process of α-helical self-assembling peptides with α-β conformational transition capability5
Improved analysis of NMR chemical shift perturbations through an error estimation method5
Conformational stability and order of Hoogsteen base pair induced by protein binding5
A surprisingly simple three-state generic process for reversible protein denaturation by trifluoroethanol5
Editorial Board5
Influence of docosahexaenoic acid on the interfacial behavior of cholesterol-containing lipid membranes: Interactions with small amphiphiles and hydration properties5
Force-induced unzipping of DNA in the presence of solvent molecules5
Editorial Board5
Copper(II) enhances the antibacterial activity of nitroxoline against MRSA by promoting aerobic glycolysis5
Affinity of aromatic amino acid side chains in amino acid solvents5
Design of zwitterionic fluorescent polymers for membrane protein solubilization into native nanodiscs5
Bilirubin nanotechnology: An innovative approach in biomedicine5
Decoding the dynamics of BCL9 triazole stapled peptide5
Editorial Board5
Editorial Board5
Aggregation and partitioning of amyloid peptide fragments in the presence of a lipid bilayer: A coarse grained molecular dynamics study5
Deterministic error propagation in ITC: Revealing multi-fold errors in Kd values under standard conditions5
The influence of pH on the structure and stability of the Grb2 dimer reveals changes in the inter-domain and molecular interaction: Could it be a modulation mechanism?5
Unveiling theranostic potential: Insights into cell-free microRNA-protein interactions5
Interaction mechanism of a cysteine protease inhibitor, odanacatib, with human serum albumin: In vitro and bioinformatics studies5
Nanoscale intracellular ultrastructures affected by osmotic pressure using small-angle X-ray scattering5
Interaction of negatively and positively capped gold nanoparticle with different lipid model membranes5
Urineprint of high-altitude: Insights from analyses of urinary biomarkers and bio-physical-chemical features of extracellular vesicles5
Composition of raft-like cell membrane microdomains resistant to styrene-maleic acid copolymer (SMA) solubilization5
Interaction process behind the strong stabilization of G-quadruplexes by alkaloid fagaronine5
In silico analysis of aptamer-RNA conjugate interactions with human transferrin receptor5
A benchmark for evaluation of structure-based online tools for antibody-antigen binding affinity5
Amyloids, amorphous aggregates and assemblies of peptides – Assessing aggregation4
Analysis of solid-state NMR data facilitated by MagRO_NMRViewJ with Graph_Robot: Application for membrane protein and amyloid.4
Studies on the binding of wedelolactone to human serum albumin with multi-spectroscopic analysis, molecular docking and molecular dynamic simulation4
Topical ocular administration using thermosensitive chitosan-glycerophosphate-PRP hydrogels for improved ocular bioavailability4
Editorial Board4
DNA groove binder and significant cytotoxic activity on human colon cancer cells: Potential of a dimeric zinc (II) phthalocyanine derivative4
Degree–based topological indices, NMR chemical shifts, chemical reactivity, molecular dynamics and DFT analysis of 1,4-Methanoazulene-9-methanol, Decahydro-4,8,8-trimethyl-, [1S-(1α,3aβ,4α,8aβ,9R)]4
Relevance of ceramide 1-phosphate domain formation in activation of cytosolic phospholipase A24
Protein–lipid acyl chain interactions: Depth-dependent changes of segmental mobility of phospholipid in contact with bacteriorhodopsin4
The growth of microbial cultures complies with the laws of thermodynamics4
In silico and in vitro characterization of Phytolacca latbenia (Moq.): QSAR, phytochemical, and toxicological insights into antiglycation and antidiabetic potential4
Raman spectroscopic signatures of amyloid fibrils: Insights into structural and biochemical changes in human tissues4
Neuroinflammation induced by amyloid-forming pancreatic amylin: Rationale for a mechanistic hypothesis4
Photophysical and structural aspects of poly-L-tryptophan: ππ4
Quantum mechanics in ion channel4
Spectroscopy studies of interaction hypericin with an anti-cancer therapy drug doxorubicin4
Molecular mechanisms of Lobeline-mediated inhibition of lysozyme amyloidogenesis: A synergistic approach using biophysical and cheminformatics techniques4
Radiation-induced alterations in the dielectric features of irradiated tissues4
Protonation and protein folding: Insights from single-molecule fluorescence4
SDS protein interactions4
Editorial Board4
Phenolic fractions of Heliotropium Bacciferum inhibit human insulin aggregation and protect against amyloid-induced cytotoxicity: Structural and biophysical analysis4
A large HIV gp41 construct with trimer-of-hairpins structure exhibits V2E mutation-dominant attenuation of vesicle fusion and helicity very similar to V2E attenuation of HIV fusion and infection and s4
Non-micellar ganglioside GM1 induces an instantaneous conformational change in Aβ42 leading to the modulation of the peptide amyloid-fibril pathway4
Decrypting the interaction pattern of Piperlongumine with calf thymus DNA and dodecamer d(CGCGAATTCGCG)2 B-DNA: Biophysical and molecular docking analysis4
Editorial Board4
The food and pharmaceutical additive benzoic acid induces amyloid fibrillation of an intrinsically disordered protein4
Dependence of cell's membrane potential on extracellular voltage observed in Chara globularis4
Small heat shock protein HSPB8 interacts with a pre-fibrillar TDP43 low complexity domain species to delay fibril formation4
The processing intermediate of human amylin, pro-amylin(1–48), has in vivo and in vitro bioactivity4
Serum albumin mitigated perfluorooctane sulfonate-induced cytotoxicity by affecting the cellular responses4
High-resolution AFM imaging of the CA125 protein and its aptamer-based complexes4
Editorial Board4
Theoretical investigation of the electronic absorption spectra of the glucosides4
Nuclease resistance and protein recognition properties of DNA and hybrid PNA-DNA four-way junctions4
iAFP-fLRM: Accurate identification of antifungal peptides via hybrid deep learning architecture and multi-modal feature fusion4
Citrullination of adenosine deaminase impairs its binding to dipeptidyl peptidase IV4
Trp residues near peptide termini enhance the membranolytic activity of cationic amphipathic α-helices4
Effect of ergosterol or cholesterol on the morphology and dynamics of the POPC/sphingomyelin bilayer3
Characterisation of collagen type I matrices for pathophysiologically relevant spatial cancer cell cultures3
A single-molecule stochastic theory of protein-ligand binding in the presence of multiple unfolding/folding and ligand binding pathways3
Integrative approaches to network pharmacology studies in wound healing and bone fracture recovery: A comprehensive review3
Editorial for the special issue “A Celebration of Women in Biophysical Chemistry”3
A model of minimal entropy generation for cytoskeletal transport systems with multiple interacting motors3
Cholesterol modulates the interaction of sodium salt with negatively charged phospholipid membrane3
Investigating the role of axonal ion channel cooperativity in action potential dynamics: Studies on Hodgkin-Huxley's model3
Structural factors governing binding of curvature-sensing peptides to bacterial extracellular vesicles covered with hydrophilic polysaccharide chains3
Erratum to “Isolated auto-citrullinated regions of PADI4 associate to the intact protein without altering their disordered conformation” [Biophysical Chemistry …(2024) …]3
Dynamic membrane interaction and amyloid fibril formation of glucagon, melittin and human calcitonin3
Assessing the inhibitory effect of lyophilised tomato extract on lysozyme fibrillation: Spectrochemical and microscopic analysis3
Molecular insights into nanoplastics-peptides binding and their interactions with the lipid membrane3
Modulating the pH-activity profile of the glucose isomerase from Thermotoga marimita by introducing positively and negatively charged residues3
A theoretical study on binding and stabilization of galactose and novel galactose analogues to the human α-galactosidase A variant causing Fabry disease3
The structure, self-assembly and dynamics of lipid nanodiscs revealed by computational approaches3
Detection of bacteriorhodopsin trimeric rotation at thermal phase transitions of purple membrane in suspension3
Editorial Board3
Inhibition of nucleation and disruption of amyloid fibrillation in human lysozyme aggregation by a potent Cu(II) flufenamate chemotherapeutic drug candidate3
A rhein-huprine hybrid protects erythrocyte membrane integrity against Alzheimer’s disease related Aβ(1-42) peptide3
Development of immobilized peroxidase on amino-functionalized magnetic MgFe2O4 nanoparticles for antioxidant activity and decolorization3
Microwave-assisted green synthesis of (Co, Gd) dual doped ZnO nanoparticles using Phyllanthus emblica extract and their applications3
Thermally stabilized chondroitin sulfate-hemoglobin nanoparticles and their interaction with bioactive compounds3
Calcium ions do not influence the Aβ(25–35) triggered morphological changes of lipid membranes3
Immature ALS-associated mutant superoxide dismutases form variable aggregate structures through distinct oligomerization processes3
Editorial Board3
Decoding the interaction of an imidazo-pyrimidine derivative with serum proteins: Spectroscopic, computational and structure-activity relationship analysis3
Understanding the conformational changes in the influenza B M2 ion channel at various protonation states3
The effect of methylated phosphatidylethanolamine derivatives on the ionization properties of signaling phosphatidic acid3
Membrane lateral organization from potential energy disconnectivity graph3
Monte Carlo molecular simulation of solution and surface-bound DNA hybridization of short oligomers at varying surface densities3
Characterization of the interaction of metal-protoporphyrins photosensitizers with β- lactoglobulin3
Insights into the mechanism of peptide fibril growth on gold surface3
Exploring impact of cold atmospheric plasma directed self-assembly of glycated bovine serum albumin3
Editorial Board3
Editorial Board3
Unbiased clustering of residues undergoing synchronous motions in proteins using NMR spin relaxation data3
Pomegranate peel, chokeberry leaves and Ironwort extract as novel natural inhibitors of amylin aggregation and cellular toxicity in pancreatic β cells3
An Atlas of the base inter-RNA stacks involved in bacterial translation3
Wine tannins and their aggregation/release with lipids and proteins: Review and perspectives for neurodegenerative diseases3
Systematic molecular profiling of non-native N6-substitution effects on m6A binding to the YTH domains of human RNA m6A readers in diabetes3
Potential differentiation of successive SARS-CoV-2 mutations by RNA: DNA hybrid analyses3
Alpha-synuclein phosphorylation induces amyloid conversion via enhanced electrostatic bridging: Insights from molecular modeling of the full-length protein3
Palmitoylation modifies transmembrane adaptor protein PAG for ordered lipid environment: A molecular dynamics simulation study3
Energy landscapes for proteins described by the UNRES coarse-grained potential3
Islet amyloid polypeptide tagged with green fluorescent protein localises to mitochondria and forms filamentous aggregates in Caenorhabditis elegans2
Insights into the structure-activity relationship of pyrimidine-sulfonamide analogues for targeting BRAF V600E protein2
In vitro and in silico effect of meldrum's acid-derived compounds on Staphylococcus aureus strains as NorA efflux pump inhibitors2
Understanding the structural dynamics of human islet amyloid polypeptide: Advancements in and applications of ion-mobility mass spectrometry2
Novel heterocyclic hybrids of Thiophene clubbed 1,3,4-oxadiazoles targeting dihydrofolate reductase (DHFR): An in silico approach, molecular docking, ADMET studies, MM-GBSA assay and MD simulations2
Corrigendum to “Modern theory of energy coupling and ATP synthesis: Violation of Gauss’s law by the chemiosmotic theory and validation of the two-ion theory” [Biophysical Chemistry 2019, 255:106271]2
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