OOIR: Observatory of International Research

Papers

(The TQCC of Biophysical Chemistry is 6. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-11-01 to 2025-11-01.)

Article	Citations
Editorial Board	76
The Boltzmann principle in the theory of enzymatic catalysis and conformational mobility of biomolecules	70
The contrasting roles of co-solvents in protein formulations and food products	55
A detailed review of genetically encodable RFPs and far-RFPs and their applications in advanced super-resolution imaging techniques	53
Probing pharmaceutically important amino acids L-isoleucine and L-tyrosine Solubilities: Unraveling the solvation thermodynamics in diverse mixed solvent systems	46
Studies on stabilization of collagen using Cr-doped polydopamine complex	45
Unveiling the mechanisms underlying photothermal efficiency of gold shell-isolated nanoparticles (AuSHINs) on ductal mammary carcinoma cells (BT-474)	43
Intrinsic disorder and structural biology: Searching where the light isn't	39
Dimethyl sulfoxide (DMSO) is a stabilizing co-solvent for G-quadruplex DNA	36
Editorial Board	34
Coupling of conformation and CPD damage in nucleosomal DNA	34
In silico investigation on the mutational analysis of BRCA1-BARD1 RING domains and its effect on nucleosome recognition and ubiquitination	30
Free energy landscape of wrapping of lipid nanocluster by polysaccharides	28
Disordered regions tune order in chromatin organization and function	27
Interaction of gentamicin and gentamicin-AOT with poly-(lactide-co-glycolate) in a drug delivery system - density functional theory calculations and molecular dynamics simulation	24
Effect of cycloastragenol and punicalagin on Prp(106–126) and Aβ(25–35) oligomerization and fibrillizaton	24
The role of hydrophobic patches of de novo designed MSI-78 and VG16KRKP antimicrobial peptides on fragmenting model bilayer membranes	22
Investigation of serotonin-receptor interactions, stability and signal transduction pathways via molecular dynamics simulations	22
Potential allosteric sites captured in glycolytic enzymes via residue-based network models: Phosphofructokinase, glyceraldehyde-3-phosphate dehydrogenase and pyruvate kinase	21
The effect of various compounds on the COVID mechanisms, from chemical to molecular aspects	20
Editorial Board	19
Selective IR super-resolution imaging of β-keratins at the bulk or interface in feather detected by using a nonlinear optical process	18
Structural aspects of the MHC expression control system	18
Quantification of protein-protein interactions and activation dynamics: A new path to predictive biomarkers	18
How to evict HP1 from H3: Using a complex salt bridge	18

Atomic insights into the inhibition of R3 domain of tau protein by epigallocatechin gallate, quercetin and gallic acid	17
The amyloidogenic peptide stretch in human tau, tau306–311 is a promising injectable hydrogelator	17
PolyQ aggregation studied by model peptides with intrinsic tryptophan fluorophores	17
Editorial Board	16
The influence of N-alkyl chains in benzoyl-thiourea derivatives on urease inhibition: Soil studies and biophysical and theoretical investigations on the mechanism of interaction	16
Computational pharmacology: New avenues for COVID-19 therapeutics search and better preparedness for future pandemic crises	16
Infrared spectrochemical findings on intermittent fasting-associated gross molecular modifications in rat myocardium	16
Differential effect of polyol and sugar osmolytes on the refolding of homologous alpha amylases: A comparative study	15
Protein folding in vitro and in the cell: From a solitary journey to a team effort	15
Editorial Board	15
Elucidation of benzene sulfonamide derivative binding at a novel interprotomer pocket of wild type and mutants of coxsackievirus B3 viral capsid using molecular dynamics simulations and density functi	14
Aβ42 fibril and non-fibril oligomers characterization using a nanopipette	14
Transient protonic capacitor: Explaining the bacteriorhodopsin membrane experiment of Heberle et al. 1994	14
Isolated auto-citrullinated regions of PADI4 associate to the intact protein without altering their disordered conformation	14
Elucidating the conformational behavior and membrane-destabilizing capability of the antimicrobial peptide ecPis-4s	14
Interdomain interactions in Grb2 revealed by the conformational stability and CD28 binding analysis	13
Exploring the aggregation of amyloid-β 42 through Monte Carlo simulations	13
Biochemical and biophysical properties of a recombinant serine peptidase from Purpureocillium lilacinum	13
Different behavior of Ferguson plot between agarose and polyacrylamide gels	13
Editorial Board	13
C-terminal determinants for RNA binding motif 7 protein stability and RNA recognition	13
DODAB vesicles containing lysophosphatidylcholines: The relevance of acyl chain saturation on the membrane structure and thermal properties	13
Decoding SARS-CoV-2 variants: Mutations, viral stability, and breakthroughs in vaccines and therapies	12
Hydrogen‑deuterium exchange mass spectrometry to study interactions and conformational changes of proteins in paints	12
Next-generation antibacterial cryogels: Berberine-infused smart membranes with molecular docking-guided targeting of MRSA and MDR E. coli	12
Discovery of TGFBR1 (ALK5) as a potential drug target of quercetin glycoside derivatives (QGDs) by reverse molecular docking and molecular dynamics simulation	12
A deep learning framework for enhancer prediction using word embedding and sequence generation	12
Exploring the physicochemical properties of the integration of Tristearoyl uridine in Langmuir monolayers: An approach to cell membrane modeling for prodrugs	11
Fifty-hertz magnetic fields induce DNA damage through activating mPTP associated mitochondrial permeability transition in senescent human fetal lung fibroblasts	11
The membrane-binding bacterial toxin long direct repeat D inhibits protein translation	11
Chemical modifications to mRNA nucleobases impact translation elongation and termination	11
Organic solvents aggregating and shaping structural folding of protein, a case study of the protease enzyme	11
Protonic conductor: Explaining the transient “excess protons” experiment of Pohl's group 2012	11
Self-assembling of coiled-coil peptides into virus-like particles: Basic principles, properties, design, and applications with special focus on vaccine design and delivery	11
Probing the ligand-binding pocket of recombinant β-lactoglobulin: Calorimetric and spectroscopic studies	11
Binding properties of recombinant LDL receptor and LOX-1 receptor to LDL measured using bio-layer interferometry and atomic force microscopy	11
Structural dynamics of a designed peptide pore under an external electric field	10
Structural and mechanical behavior of type-I collagen fibrils in presence of induced electrostatic interactions through ionic liquids	10
Sugar distributions on gangliosides guide the formation and stability of amyloid-β oligomers	10
Editorial Board	10
Assessing the DNA structural integrity via selective annihilation of Watson-Crick hydrogen bonds: Insights from molecular dynamics simulations	10
NMR and EPR study of the interaction of tris(3-hydroxy-4-pyridinonato) Ga(III) complexes with liposomes that mimic plant membranes	10
The role of nonlinear axonal membrane capacitance in modulating ion channel cooperativity in action potential dynamics: Studies on Hodgkin-Huxley's model	10
Characterization of plasmatic proteins adsorption on poly(styrene sodium sulfonate) functionalized silicone surfaces	10
Local optical probing of proteins of various sizes and charges with FITC label	9
The scientific adventures of Richard Epand	9
Crystal structure analysis of pyrrolidone carboxyl peptidase from Thermus thermophilus	9
Excitation energy migration to study protein oligomerization and amyloid formation	9
Interaction of detergent with complex mimics of bacterial membranes	9
Editorial Board	9

A pipeline to evaluate the discrepant interactions between typical nitrogenous disinfection byproduct haloacetonitriles and human hemoglobin	9
Analyzing the interaction of Helicobacter pylori GAPDH with host molecules and hemin: Inhibition of hemin binding	9
The B-box1 domain of PML mediates SUMO E2-E3 complex formation through an atypical interaction with UBC9	9
Isolation of Amyloid-like Protein Aggregates (APA) from white bread and their characterisation	8
A combination of structure-based virtual screening and experimental strategies to identify the potency of caffeic acid ester derivatives as SARS-CoV-2 3CLpro inhibitor from an in-house database	8
Simulated pressure changes in LacI suggest a link between hydration and functional conformational changes	8
Computational design of a β-wrapin's N-terminal domain with canonical and non-canonical amino acid modifications mimicking curcumin's proposed inhibitory function	8
Luteoloside inhibits Aβ1–42 fibrillogenesis, disintegrates preformed fibrils, and alleviates amyloid-induced cytotoxicity	8
Effects of curcumin in the interaction with cardiolipin-containg lipid monolayers and bilayers	8
Oxidative damage to βL-crystallin in vitro by iron compounds formed in physiological buffers	8
pH dependence of C•A, G•A and A•A mismatches in the stem of precursor microRNA-31	8
Biophysical significance of fluorescence spectroscopy in deciphering nucleic acid dynamics: From fundamental to recent advancements	8
Editorial Board	8
Editorial Board	8
ROC-guided virtual screening, molecular dynamics simulation, and bioactivity validation assessment Z195914464 as a 3CL Mpro inhibitor	8
Exploring the binding kinetics and behaviors of self-aggregated beta-amyloid oligomers to phase-separated lipid rafts with or without ganglioside-clusters	8
Interaction of Myrsinoic acid a with biomembrane models: Differential effects on DPPC and DPPS properties revealed by surface rheology and vibrational spectroscopy	8
Influence of amphotericin B on the DPPC/DOPC/sterols mixed monolayer in the presence of calcium ions	8
Editorial Board	7
Evidence of the different effect of mercury and cadmium on the hIAPP aggregation process	7
Mutations in asparaginase II from E. coli and implications for inactivation and PEGylation	7
Biotransformation of phenytoin in the electrochemically-driven CYP2C19 system	7
Editorial Board	7
Differential effects of DTT on HEWL amyloid fibrillation and fibril morphology at different pH	7
The role of the lipid environment in the activity of G protein coupled receptors	7
Identification of the therapeutic potential of novel TIGIT/PVR interaction blockers based advanced computational techniques and experimental validation	7
An interpretable machine learning method for homo-trimeric protein interface residue-residue interaction prediction	7
Reversible and irreversible mitochondrial swelling in vitro	7
Secondary structure of peptides mimicking the Gly-rich regions of major ampullate spidroin protein 1 and 2	7
Targeting hydrophobicity in biofilm-associated protein (Bap) as a novel antibiofilm strategy against Staphylococcus aureus biofilm	7
Tunnel connects lipid bilayer to occluded odorant-binding site of insect olfactory receptor	7
Editorial Board	7
Richer than previously probed: An application of 1H NMR reveals one hundred metabolites using only fifty microliter serum	7
Backbone equilibrium in mismatched DNA influenced by solution conditions	7
A semiempirical and machine learning approach for fragment-based structural analysis of non-hydroxamate HDAC3 inhibitors	7
Metal-binding and folding thermodynamics of Escherichia coli ribonuclease HI related to its catalytic function	7
Effect of partial O-methylation in dehydrodieugenol on its antitrypanosomal activity - correlation with the toxicity using cell membrane models	7
Editorial Board	7
Exploring the solubility and intermolecular interactions of biologically significant amino acids l-serine and L-cysteine in binary mixtures of H2O + DMF, H2O + DMSO and H2O + ACN in temperature range	7
Thermodynamics of oligomerization and Helix-to-sheet structural transition of amyloid β-protein on anionic phospholipid vesicles	7
The composition of fusogenic lipid mixtures at the air-water modulates the physicochemical properties changes upon interaction with lysicamine	7
How to best estimate the viscosity of lipid bilayers	7
Molecular dynamics of SARS-CoV-2 omicron variants from Philippine isolates against hesperidin as spike protein inhibitor	7
Identification of determinants of lipid and ion transport in TMEM16/anoctamin proteins through a Bayesian statistical analysis	7
Force-induced unzipping of DNA in the presence of solvent molecules	6
Editorial Board	6
Nearest-neighbour parametrization of DNA single, double and triple mismatches at low sodium concentration	6
Copper(II) enhances the antibacterial activity of nitroxoline against MRSA by promoting aerobic glycolysis	6
Effects of an external static EF on the conformational transition of 5-HT1A receptor: A molecular dynamics simulation study	6
Editorial Board	6
The pH dependence of emulsifying properties for glutathione disulfide at oil-water interfaces	6
Equilibrium solubility, solvent effect, solvation and thermodynamic modeling of 1, 3-dinitropyrazole in solutions of methyl alcohol /ethyl alcohol + water	6
Structural modeling, energetic analysis and molecular design of a π-stacking system at the complex interface of pediatric respiratory syncytial virus nucleocapsid with the C-terminal peptide of phosph	6
Asymmetrical interactions between nanoparticles and proteins arising from deformation upon adsorption to surfaces	6
Influence of docosahexaenoic acid on the interfacial behavior of cholesterol-containing lipid membranes: Interactions with small amphiphiles and hydration properties	6
A benchmark for evaluation of structure-based online tools for antibody-antigen binding affinity	6
Mechanistic and biophysical insight into the inhibitory and disaggregase role of antibiotic moxifloxacin on human lysozyme amyloid formation	6
The influence of pH on the structure and stability of the Grb2 dimer reveals changes in the inter-domain and molecular interaction: Could it be a modulation mechanism?	6
Combined effect of the head groups and alkyl chains of archaea lipids when interacting with bacteriorhodopsin	6
Editorial Board	6
Cationic liposomes as carriers of natural compounds from plant extract	6
Liposomes encapsulating artificial cytosol as drug delivery system	6
Salvianolic acid B prevents the amyloid transformation of A53T mutant of α-synuclein	6
Structural packing of the non-amyloid component core domain in α-synuclein plays a role in the stability of the fibrils	6
Hydrolysis rate constants of ATP determined in situ at elevated temperatures	6
Lipid domain boundary triggers membrane damage and protein folding of human islet amyloid polypeptide in the early pathogenesis of amyloid diseases	6
Aggregation and partitioning of amyloid peptide fragments in the presence of a lipid bilayer: A coarse grained molecular dynamics study	6
pH-equilibration of human hair: Kinetics and pH-dependence of the partition ratios for H − and OH -ions based on a Freundlich isotherm	6
Conformational stability and order of Hoogsteen base pair induced by protein binding	6
Unveiling theranostic potential: Insights into cell-free microRNA-protein interactions	6
Probing and gauging of D-Penicillamine xenobiotics in hepatic Wilson disease patients	6
The effect of human serum albumin glycation on the binding of antidiabetic agent-exenatide; the multispectroscopic studies. Part II	6
Analyzing of L-tryptophan thermodynamics and its solubility in aqueous acetonitrile blends at diverse temperatures	6
Editorial Board	6
Biocementation of soils of different surface chemistries via enzyme induced carbonate precipitation (EICP): An integrated laboratory and molecular dynamics study	6