Journal of Mathematical Biology

Article	Citations
Kinetic models for epidemic dynamics with social heterogeneity	35
Spatial movement with distributed memory	34
Fixation probabilities in evolutionary dynamics under weak selection	31
A delay suppression model with sterile mosquitoes release period equal to wild larvae maturation period	31
Control with uncertain data of socially structured compartmental epidemic models	28
Turing conditions for pattern forming systems on evolving manifolds	27
Spatiotemporal patterns of a diffusive prey-predator model with spatial memory and pregnancy period in an intimidatory environment	27
Invasion analysis on a predator–prey system in open advective environments	25
A general theory of coexistence and extinction for stochastic ecological communities	24
Asymptotic profiles of the steady states for an SIS epidemic patch model with asymmetric connectivity matrix	24
Modeling and dynamics of Wolbachia-infected male releases and mating competition on mosquito control	22
Optimal control of an SIR epidemic through finite-time non-pharmaceutical intervention	20
Time-dependent solution of the NIMFA equations around the epidemic threshold	19
Open problems in PDE models for knowledge-based animal movement via nonlocal perception and cognitive mapping	18
Classes of explicit phylogenetic networks and their biological and mathematical significance	18
Analysis of an age-structured tuberculosis model with treatment and relapse	18
Continuous-time stochastic processes for the spread of COVID-19 disease simulated via a Monte Carlo approach and comparison with deterministic models	18
Vaccination and herd immunity thresholds in heterogeneous populations	17
Threshold dynamics of a nonlocal and delayed cholera model in a spatially heterogeneous environment	16
A geometric analysis of the SIRS epidemiological model on a homogeneous network	15
On the heterozygosity of an admixed population	15
Mathematical analysis on an age-structured SIS epidemic model with nonlocal diffusion	15
Dynamics of task allocation in social insect colonies: scaling effects of colony size versus work activities	15
Travelling wave solutions in a negative nonlinear diffusion–reaction model	15
Global dynamics of a generalist predator–prey model in open advective environments	15

Relatedness coefficients in pedigrees with inbred founders	14
Spots, stripes, and spiral waves in models for static and motile cells	14
Information geometry for phylogenetic trees	14
Complete Characterization of Incorrect Orthology Assignments in Best Match Graphs	14
Maximizing the total population with logistic growth in a patchy environment	13
Impact of releasing period and magnitude on mosquito population in a sterile release model with delay	13
Global analysis of a predator–prey model with variable predator search rate	13
Bifurcation analysis of the predator–prey model with the Allee effect in the predator	13
Theoretical modeling of collaterally sensitive drug cycles: shaping heterogeneity to allow adaptive therapy	13
On the global attractivity for a reaction–diffusion malaria model with incubation period in the vector population	13
On the effects of carrying capacity and intrinsic growth rate on single and multiple species in spatially heterogeneous environments	13
On the Lotka–Volterra competition system with dynamical resources and density-dependent diffusion	13
Mixture distributions in a stochastic gene expression model with delayed feedback: a WKB approximation approach	12
Counting phylogenetic networks of level 1 and 2	12
Harvesting and seeding of stochastic populations: analysis and numerical approximation	12
Permanence via invasion graphs: incorporating community assembly into modern coexistence theory	12
Analysis of a two-strain malaria transmission model with spatial heterogeneity and vector-bias	12
A spatial model of honey bee colony collapse due to pesticide contamination of foraging bees	12
An integrodifference model for vegetation patterns in semi-arid environments with seasonality	12
Herd immunity under individual variation and reinfection	12
Stationary distributions of persistent ecological systems	11
Dynamics of SIR model with vaccination and heterogeneous behavioral response of individuals modeled by the Preisach operator	11
Dynamic metabolic resource allocation based on the maximum entropy principle	11
Structural identifiability analysis of age-structured PDE epidemic models	11
The structure of infinitesimal homeostasis in input–output networks	11
Optimal open-loop desynchronization of neural oscillator populations	11
Geometric singular perturbation theory analysis of an epidemic model with spontaneous human behavioral change	11
Multiscale modeling of glioma pseudopalisades: contributions from the tumor microenvironment	10
Nonlocal and local models for taxis in cell migration: a rigorous limit procedure	10
Computing nearest neighbour interchange distances between ranked phylogenetic trees	10
An SIRS model with nonmonotone incidence and saturated treatment in a changing environment	10
Demographic feedbacks can hamper the spatial spread of a gene drive	10
Modeling the role of macrophages in HIV persistence during antiretroviral therapy	10
A reaction-advection-diffusion model of cholera epidemics with seasonality and human behavior change	9
Population abundance of two-patch competitive systems with asymmetric dispersal	9
Identifiability of local and global features of phylogenetic networks from average distances	9
Long-lasting insecticidal nets and the quest for malaria eradication: a mathematical modeling approach	9
A branching process model for dormancy and seed banks in randomly fluctuating environments	9
Incentives, lockdown, and testing: from Thucydides’ analysis to the COVID-19 pandemic	9
Resident-invader dynamics of similar strategies in fluctuating environments	9
Analysis and optimal control of an HIV model based on CD4 count	9
Unbounded solutions of models for glycolysis	8
A West Nile virus nonlocal model with free boundaries and seasonal succession	8
On asymptotic joint distributions of cherries and pitchforks for random phylogenetic trees	8
Indirect identification of horizontal gene transfer	8
Solving the chemical master equation for monomolecular reaction systems and beyond: a Doi-Peliti path integral view	8
On the optimal control of SIR model with Erlang-distributed infectious period: isolation strategies	8
An all-leader agent-based model for turning and flocking birds	8
Distinguishing level-1 phylogenetic networks on the basis of data generated by Markov processes	8
On the qualitative study of a two-trophic plant–herbivore model	8

Basic reproduction ratio of a mosquito-borne disease in heterogeneous environment	8
Parameterization of mechanistic models from qualitative data using an efficient optimal scaling approach	8
Trinets encode orchard phylogenetic networks	7
Identifiability of species network topologies from genomic sequences using the logDet distance	7
Corrigendum to “Best match graphs”	7
Learning black- and gray-box chemotactic PDEs/closures from agent based Monte Carlo simulation data	7
A reaction–diffusion model of spatial propagation of A$$\beta $$ oligomers in early stage Alzheimer’s disease	7
Bistability in deterministic and stochastic SLIAR-type models with imperfect and waning vaccine protection	7
A non-parametric method for determining epidemiological reproduction numbers	7
Long-time behavior of a PDE replicator equation for multilevel selection in group-structured populations	7
Analysis of a diffusive epidemic system with spatial heterogeneity and lag effect of media impact	7
Fixation probabilities for the Moran process with three or more strategies: general and coupling results	7
The emergence of a virus variant: dynamics of a competition model with cross-immunity time-delay validated by wastewater surveillance data for COVID-19	7
A two-thresholds policy for a Filippov model in combating influenza	7
A model of algal growth depending on nutrients and inorganic carbon in a poorly mixed water column	7
Early epidemic spread, percolation and Covid-19	7
A modified Ising model of Barabási–Albert network with gene-type spins	7
Caterpillars on three and four leaves are sufficient to reconstruct binary normal networks	6
Impact of population size and movement on the persistence of a two-strain infectious disease	6
A novel mathematical model of heterogeneous cell proliferation	6
Invasive behaviour under competition via a free boundary model: a numerical approach	6
The tree of blobs of a species network: identifiability under the coalescent	6
Time dependent asymptotic analysis of the gene regulatory network of the AcrAB-TolC efflux pump system in gram-negative bacteria	6
Use of mathematical modelling to assess respiratory syncytial virus epidemiology and interventions: a literature review	6
Analysis of the onset of a regime shift and detecting early warning signs of major population changes in a two-trophic three-species predator-prey model with long-term transients	6
Scheduling fixed length quarantines to minimize the total number of fatalities during an epidemic	6
A delay model for persistent viral infections in replicating cells	6
The intrarenal renin-angiotensin system in hypertension: insights from mathematical modelling	6
Parameter estimation in fluorescence recovery after photobleaching: quantitative analysis of protein binding reactions and diffusion	6
An HIV stochastic model with cell-to-cell infection, B-cell immune response and distributed delay	6
Haldane’s formula in Cannings models: the case of moderately strong selection	6
Interactions between different predator–prey states: a method for the derivation of the functional and numerical response	6
Estimating the extent of glioblastoma invasion	6
A multiphase model of growth factor-regulated atherosclerotic cap formation	6
Stability of a one-dimensional morphoelastic model for post-burn contraction	6
Temperature sensitivity of pest reproductive numbers in age-structured PDE models, with a focus on the invasive spotted lanternfly	5
Evolution of a structured cell population endowed with plasticity of traits under constraints on and between the traits	5
Within-host bacterial growth dynamics with both mutation and horizontal gene transfer	5
Efficiency functionals for the Lévy flight foraging hypothesis	5
Influence of a road on a population in an ecological niche facing climate change	5
Population dynamics under climate change: persistence criterion and effects of fluctuations	5
Stochastic dynamics of an SIS epidemic on networks	5
Lotka–Volterra approximations for evolutionary trait-substitution processes	5
Discrete coalescent trees	5
Stochastic control of ecological networks	5
Implications of immune-mediated metastatic growth on metastatic dormancy, blow-up, early detection, and treatment	5
Dynamics of epidemic spreading on connected graphs	5
Dispersal-induced growth in a time-periodic environment	5
Dynamics of a periodic tick-borne disease model with co-feeding and multiple patches	5
Limits of epidemic prediction using SIR models	5
Operon dynamics with state dependent transcription and/or translation delays	5
A hierarchical intervention scheme based on epidemic severity in a community network	5
On real-valued SDE and nonnegative-valued SDE population models with demographic variability	5
Coevolutionary dynamics of host-pathogen interaction with density-dependent mortality	5
A systematic procedure for incorporating separable static heterogeneity into compartmental epidemic models	5
Stochastic models of infectious diseases in a periodic environment with application to cholera epidemics	5
Heteroclinic cycling and extinction in May–Leonard models with demographic stochasticity	5
Incorporating carbon dioxide into a stoichiometric producer–grazer model	5
Analytic solutions for stochastic hybrid models of gene regulatory networks	5
The impact of infection-derived immunity on disease dynamics	5
Foundations of static and dynamic absolute concentration robustness	5
Epidemic modeling with heterogeneity and social diffusion	5
Propagation direction of traveling waves for a class of bistable epidemic models	5
Differential equation model for central-place foragers with memory: implications for bumble bee crop pollination	5
Traveling waves in non-local pulse-coupled networks	5
Low-rank tensor methods for Markov chains with applications to tumor progression models	4
Equilibrium and surviving species in a large Lotka–Volterra system of differential equations	4
Long-time behavior and Darwinian optimality for an asymmetric size-structured branching process	4
Cooperativity, absolute interaction, and algebraic optimization	4
Reduced biomechanical models for precision-cut lung-slice stretching experiments	4
General conditions for Turing and wave instabilities in reaction -diffusion systems	4
Analysis of trophic networks: an optimisation approach	4
Long-range seed dispersal enables almost stationary patterns in a model for dryland vegetation	4
Wave speed and critical patch size for integro-difference equations with a strong Allee effect	4
A dual process for the coupled Wright–Fisher diffusion	4
Pace and motor control optimization for a runner	4
Continuous and discrete modeling of HIV-1 decline on therapy	4
Reduction of a stochastic model of gene expression: Lagrangian dynamics gives access to basins of attraction as cell types and metastabilty	4
Mathematical indices for the influence of risk factors on the lethality of a disease	4
Semigroup models for biochemical reaction networks	4

A Turing mechanism in order to explain the patchy nature of Crohn’s disease	4
A Fokker–Planck feedback control framework for optimal personalized therapies in colon cancer-induced angiogenesis	4
Life history traits and dispersal shape neutral genetic diversity in metapopulations	4
Revisiting Shao and Sokal’s B2 index of phylogenetic balance	4
Spectral analysis of transient amplifiers for death–birth updating constructed from regular graphs	4
Physiological insights into electrodiffusive maintenance of gastric mucus through sensitivity analysis and simulations	4
Perceptive movement of susceptible individuals with memory	4
Optimal vaccine allocation for the control of sexually transmitted infections	4
Pedigree in the biparental Moran model	4
Theoretical growth rate of microalgae under high/low-flashing light	4
Rich dynamics of a bidirectionally linked immuno-epidemiological model for cholera	4
Populations in environments with a soft carrying capacity are eventually extinct	4
Multivariate phase-type theory for the site frequency spectrum	4
Adaptation in a heterogeneous environment I: persistence versus extinction	4
Quasi-neutral dynamics in a coinfection system with N strains and asymmetries along multiple traits	4
An SIR model with viral load-dependent transmission	4
Target reproduction numbers for reaction-diffusion population models	4
An algebraic characterization of self-generating chemical reaction networks using semigroup models	4
Detecting minimum energy states and multi-stability in nonlocal advection–diffusion models for interacting species	4
A Markovian arrival stream approach to stochastic gene expression in cells	4
Mathematical models for the effect of anti-vascular endothelial growth factor on visual acuity	4
Gain and loss of function mutations in biological chemical reaction networks: a mathematical model with application to colorectal cancer cells	4
Slowest first passage times, redundancy, and menopause timing	3
Inference on autoregulation in gene expression with variance-to-mean ratio	3
Viral dynamics with immune responses: effects of distributed delays and Filippov antiretroviral therapy	3
Determination of significant immunological timescales from mRNA-LNP-based vaccines in humans	3
Implicit versus explicit vector management strategies in models for vector-borne disease epidemiology	3
Fluctuating-rate model with multiple gene states	3
Evolutionary dynamics in an SI epidemic model with phenotype-structured susceptible compartment	3
Imperfect and Bogdanov–Takens bifurcations in biological models: from harvesting of species to isolation of infectives	3
Antigen receptor therapy in bone metastasis via optimal control for different human life stages	3
The large-sample asymptotic behaviour of quartet-based summary methods for species tree inference	3
Modelling dendritic spines with the finite element method, investigating the impact of geometry on electric and calcic responses	3
Can a barrier zone stop invasion of a population?	3
Population dynamics with resource-dependent dispersal: single- and two-species models	3
Spatial dynamics of a vegetation model with uptake–diffusion feedback in an arid environment	3
An epidemic model with short-lived mixing groups	3
Relative prevalence-based dispersal in an epidemic patch model	3
Structural identifiability analysis of epidemic models based on differential equations: a tutorial-based primer	3
Local asymptotic stability of a system of integro-differential equations describing clonal evolution of a self-renewing cell population under mutation	3
Scaling relations for auxin waves	3
Mathematical model for the estrogen paradox in breast cancer treatment	3
Assessment of event-triggered policies of nonpharmaceutical interventions based on epidemiological indicators	3
Symmetry-breaking longitude bifurcations for a free boundary problem modeling small plaques in three dimensions	3
Dynamics of a new HIV model with the activation status of infected cells	3
Population growth and competition models with decay and competition consistent delay	3
Aposematic signalling in prey-predator systems: determining evolutionary stability when prey populations consist of a single species	3
Quorum-sensing induced transitions between bistable steady-states for a cell-bulk ODE-PDE model with lux intracellular kinetics	3
Global dynamics of the chemostat with overflow metabolism	3
Hybrid models of chemotaxis with application to leukocyte migration	3
Analytical detection of stationary and dynamic patterns in a prey–predator model with reproductive Allee effect in prey growth	3
The rigid hybrid number for two phylogenetic trees	3
Comparative analysis of continuum angiogenesis models	3
Pulled, pushed or failed: the demographic impact of a gene drive can change the nature of its spatial spread	3
A game-theoretic model of rabies in domestic dogs with multiple voluntary preventive measures	3
Deterministic and stochastic modeling for PDGF-driven gliomas reveals a classification of gliomas	3
Bifurcations driven by generalist and specialist predation: mathematical interpretation of Fennoscandia phenomenon	3
Accessibility percolation on Cartesian power graphs	3
An alternative delayed population growth difference equation model	3
Stoechiometric and dynamical autocatalysis for diluted chemical reaction networks	3
Stoichiometry and environmental change drive dynamical complexity and unpredictable switches in an intraguild predation model	3
An investigation of tuberculosis progression revealing the role of macrophages apoptosis via sensitivity and bifurcation analysis	3
Long time behavior and stable patterns in high-dimensional polarity models of asymmetric cell division	3
Optimal control by deep learning techniques and its applications on epidemic models	3
Discrete-time population dynamics of spatially distributed semelparous two-sex populations	3
On convergence for hybrid models of gene regulatory networks under polytopic uncertainties: a Lyapunov approach	3
The dynamics of sexually transmitted diseases with men who have sex with men	3
Cost optimisation of hybrid institutional incentives for promoting cooperation in finite populations	3
Feasibility of sparse large Lotka-Volterra ecosystems	3
Optimal control of bioproduction in the presence of population heterogeneity	3
Operating diagrams for a three-tiered microbial food web in the chemostat	2
The model-specific Markov embedding problem for symmetric group-based models	2
A chain binomial epidemic with asymptomatics motivated by COVID-19 modelling	2
A continuation method for spatially discretized models with nonlocal interactions conserving size and shape of cells and lattices	2
SIRC epidemic model with cross-immunity and multiple time delays	2
A systematic search for switch-like behavior in type II toxin–antitoxin systems	2
Unifying incidence and prevalence under a time-varying general branching process	2
A new algebraic approach to genome rearrangement models	2
A mathematical representation of the reactive scope model	2
Implications for infectious disease models of heterogeneous mixing on control thresholds	2
‘Holey’ niche! finding holes in niche hypervolumes using persistence homology	2
Analysis of a mathematical model of immune response to fungal infection	2
COVID-19-associated pulmonary aspergillosis in immunocompetent patients: a virtual patient cohort study	2
Quasi-steady-state reduction of a model for cytoplasmic transport of secretory vesicles in stimulated chromaffin cells	2
Tumor growth towards lower extracellular matrix conductivity regions under Darcy’s Law and steady morphology	2
Evolutionary dynamics of complex traits in sexual populations in a heterogeneous environment: how normal?	2
Novel spatial profiles of some diffusive SIS epidemic models	2
A simple in-host model for COVID-19 with treatments: model prediction and calibration	2
Correction to: General conditions for Turing and wave instabilities in reaction–diffusion systems	2
On inverse problems for several coupled PDE systems arising in mathematical biology	2
The importance of quarantine: modelling the COVID-19 testing process	2
Spatiotemporal dynamics induced by intraguild predator diffusion in an intraguild predation model	2
Adjusting the range of cell–cell communication enables fine-tuning of cell fate patterns from checkerboard to engulfing	2
A computational framework for evaluating the role of mobility on the propagation of epidemics on point processes	2
Dynamics of ERK regulation in the processive limit	2