Ecological Modelling

Article	Citations
Simplifying a complex computer model: Sensitivity analysis and metamodelling of an 3D individual-based crop-weed canopy model	273
Modified framework to reflect contribution of soil storage in emergy synthesis under different agricultural practices at farm level	171
Modelling the effects of copepod diel vertical migration and community structure on ocean carbon flux using an agent-based model	149
Spatial patterns of correlation between conspecific species and size diversity in forest ecosystems	129
Real-time assessment of live forest fuel moisture content and flammability by using space-time universal kriging	68
Effects of a mobile disturbance pattern on dynamic patch networks and metapopulation persistence	63
Mathematical modeling in behavior responses: The tendency-prediction based on a persistence model on real-time data	62
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A protocol for implementing parameter sensitivity analyses in complex ecosystem models	40
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Corrigendum to Insights into the environmental conditions contributing to variability in the larval recruitment of the tropical sardine Sardinella lemuru	37
Estimating stomatal conductance under drought: Parameterizing a phenomenological model and evaluating roles of the energy balance equation	35
A bioenergetics model for seasonal growth of Indian oil sardine (Sardinella longiceps) in the Indian west coast	35
Multimedia fates and ecological risk control strategies of phthalic acid esters in a lake recharged by reclaimed water using the QWASI fugacity model	34
Optimising profits from timber harvest and the biodiversity conservation value in a central European beech forest using a novel bioeconomic forestry model	34
Calibration and validation of the AquaCrop model for production arrangements of forage cactus and grass in a semi-arid environment	34
Analysis of carbon emission drivers and peak carbon forecasts for island economies	33
Impact of population growth and housing development on the riverine environment: Identifying environmental threat and solution in the Wanggu River, Indonesia	31
Modelling assessment of how small-scale vertical movements of infectious sea lice larvae can affect their large-scale distribution in fjordic systems	30
Individual-based modelling of adaptive physiological traits of cyanobacteria: Responses to light history	28

Resource objective wildfire leveraged to restore old growth forest structure while stabilizing carbon stocks in the southwestern United States	28
Modeling collective motion for fish schooling via multi-agent reinforcement learning	28
Simulation of forest carbon fluxes by integrating remote sensing data into biome-BGC model	27
A new model formulation for host depletion in parasitoids	27
Snow runoff modelling in the upper Indus River Basin and its implication to energy water food nexus	27
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Machine-learning modeling on tree mortality and growth reduction of temperate forests with climatic and ecophysiological parameters	26
Corrigendum to “How can oak regeneration in the Leipzig Floodplain Forest be effectively supported by femel plantations? Application of a demographic forest model” [Ecological Modelling 499 (2025) 110	25
Incorporating biodiversity impacts in land use decisions	24
Mechanistic simulations of kelp populations in a dynamic landscape of light, temperature, and winter storms	24
Seasonal pattern of dengue infection in Singapore: A mechanism-based modeling and prediction	23
Individual-based modeling of shelled pteropods	23
Reconsidering the Price equation: Benchmarking the analytical power of additive partitioning in ecology	23
Addition of finer scale data and uncertainty analysis increases precision of geospatial suitability model for non-native plants in the US	23
Intelligent classification model of land resource use using deep learning in remote sensing images	23
Socio-econ-ecosystem multipurpose simulator (SEEMS): An easy-to-apply agent-based model for simulating small-scale coupled human and nature systems in biological conservation hotspots	23
A high resolution hydrodynamic-biogeochemical-oyster-filtration model predicts that the presence of oysters (Crassostrea virginica) can improve, or reduce, water quality depending upon oyster abundanc	23
Indirect effects of pine marten recovery result in benefits to native prey through suppression of an invasive species and a shared pathogen	22
Separating acoustic signal into underlying behaviors with self-exciting point process models	22
Modelling the dynamics of soil moisture and soil water salinity in tropical saltmarshes	22
Unfolding carbon inequality across Belt and Road Initiative countries and regions under a global trade network	22
Less is more: Less herbicide does more when biological control is present in Pontederia crassipes	22
Uncertainties in future ecosystem services under land and climate scenarios: The case of erosion in the Alps	22
One century of carbon dynamics in the eastern Canadian boreal forest under various management strategies and climate change projections	21
Development and application of a bioenergetics growth model for multiple early life stages of an ecologically important marine fish	21
Coastal generalized ecosystem model (CGEM) 1.0: Flexible model formulations for simulating complex biogeochemical processes in aquatic ecosystems	21
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Modelling interactive effects of biological and environmental factors on fine-scale coral settlement patterns	20
Building ecosystem services-based ecological networks in energy and chemical industry areas	20
“Teaching ‘Process Ecology’ at the Undergraduate Level: A Curricular Response to a Latent Yearning for an Ecologically-Based Understanding of Transdisciplinary Realities”	20
Estimating the fundamental niche: Accounting for the uneven availability of existing climates in the calibration area	19
A comparison of machine learning and statistical species distribution models: Quantifying overfitting supports model interpretation	19
Long-term assessment of land-use and climate change on water scarcity in an arid basin in Iran	19
Functional responses in habitat selection as a management tool to evaluate agri-environment schemes for farmland birds	19
Corrigendum to ‘Agent-based modelling of juvenile eel migration via selective tidal stream transport’ [Ecological Modelling 443 (2021) 109448]	19
How sustainable development goals have transformed our world? Evolution of the ecological networks of the Italian economy	19
Analysis of simulated trap counts arising from correlated and biased random walks	19
Land suitability assessment and self-sufficiency evaluation for fodder crop production in a hyper arid environment coupling GIS-based multi-criteria decision making and optimization	19
Comparison of several models for estimating gross primary production of drip-irrigated maize in arid regions	19
Age structured partial differential equations model for Culex mosquito abundance	18
A method for estimating biomass of age-0 fish in case of protracted spawning leading to multiple larval cohorts in the population	18
Performance comparison of sewage treatment plants before and after their upgradation using emergy evaluation combined with economic analysis: A case from Southwest China	18
Modeling of the spread of non-adaptive traits in a natural population due to self-compatibility	18
Assessing between-individual variability in bioenergetics modelling: Opportunities, challenges, and potential applications	18
Revolutionising sustainability using a new triplet: A system dynamic model	18
Modeling drought mortality and resilience of savannas and forests in tropical Asia	18
Is toxicity a curse or blessing, or both?—Searching answer from a disease-induced consumer-resource system	18
Informing Surveillance through the Characterization of Outbreak Potential of Chronic Wasting Disease in White-Tailed Deer	17
Combining CENTURY model and vulnerability assessment index to estimate aboveground biomass and ecological vulnerability of grassland: An analysis in Northwest Sichuan Plateau	17
Emergy ecological footprint analysis of Yaghooti grape production in the Sistan region of Iran	17

A Monte-Carlo based 3-D ballistics model for guiding bat carcass surveys using environmental and turbine operational data	17
Species profiles support recommendations for quality filtering of opportunistic citizen science data	17
Bush encroachment with climate change in protected and communal areas: A species distribution modelling approach	17
Metacommunity stability and persistence for predation turnoff in selective patches	17
Integrating ecosystem services modeling and efficiencies in decision-support models conceptualization for watershed management	17
Spatial-temporal evolution of carbon storage and its driving factors in the Shanxi section of the Yellow River Basin, China	17
Dynamic energy budget modelling of anuran metamorphosis	16
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On the evolution of dispersal strategies under the costs of acquisition of private and social information	16
Spatial mechanistic modelling to simulate movements and contacts between wildlife and livestock in Southern Africa	16
Demystifying Monte Carlo methods in R: A guide from Metropolis–Hastings to Hamiltonian Monte Carlo with biological growth equation examples	16
Framing settlement systems as spatial adaptive systems	16
An individual-based model for exploration of population and stock dynamics in marine fishes	15
Parameter sensitivity and transferability for simulating ET and GPP of Dryland ecosystems across a climate gradient	15
Ecological effect of seasonally changing temperature on the life cycle of Aurelia aurita	15
Comparing distribution of harbour porpoise using generalized additive models and hierarchical Bayesian models with integrated nested laplace approximation	15
Effects of temperature and salinity on growth of Aurelia aurita	15
Understanding the drivers of fish variability in an end-to-end model of the Northern Humboldt Current System	15
Predicting the potential impact of forest fires on runoff and sediment loads using a distributed hydrological modeling approach	15
The landscape altered the interaction between vegetation and climate in the desert oasis of Hotan River Basin, Xinjiang, China	15
Uncertainty in forecasting land cover land use at a watershed scale: Towards enhanced sustainable land management	15
Energy-systems accounting in industrial-natural systems; An energy analysis of a managed forest ecosystem including food web biomass dynamics	15
A dynamic outbreak distribution model (DODM) for an irruptive folivore: The western spruce budworm	15
Canary palms in rural areas as invasion bridges: Exploring simulated red palm weevil spread across date palm plantations	14
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Moths exhibit strong memory among cooperative species of other taxonomic groups: An empirical study	14
Modeling the life cycle of four types of phytoplankton and their bloom mechanisms in a benthic-pelagic coupled ecosystem	14
Simulation of N2O emissions from greenhouse vegetable production under different management systems in North China	14
Field-scale simulation of runoff and water quality in a paddy field: A study of novel RWQSPad model	14
Modelling system dynamics as a socio-ecological perspective to support human-beaver interactions	14
Modeling soil carbon accumulation in irrigated agricultural systems	14
When does artificial intelligence replace process-based models in ecological modelling?	14
Correlated Random Walk of tuna in arrays of Fish Aggregating Devices: A field-based model from passive acoustic tagging	13
Identifying optimal cloud cover for enhanced forest carbon uptake: Periodic-case NEE-overshoot modelling	13
Current bioclimatic suitability and climate change impacts on the risk of cacao moniliasis invasion in Pará	13
Dynamic evolution and simulation of habitat quality in arid regions: A case study of the Hexi region, China	13
DiaThor: R package for computing diatom metrics and biotic indices	13
Analyzing sustainable development strategies through multi-method integration in the Green Economy Model	13
A hierarchical Bayesian approach for incorporating expert opinions into parametric survival models: A case study of female Ixodes ricinus ticks exposed to various temperature and relative humidity con	13
Understanding plankton ecosystem dynamics under realistic micro-scale variability requires modeling at least three trophic levels	13
Using Hidden Markov Models to develop ecosystem indicators from non-stationary time series	13
Comparing commonly used aquatic habitat modeling methods for native fish	13
An exploration of solar-induced chlorophyll fluorescence (SIF) factors simulated by SCOPE for capturing GPP across vegetation types	12
Sector aggregation effect on embodied carbon emission based on city-centric global multi-region input-output (CCG-MRIO) model	12
Real world data for real world problems: Importance of appropriate spatial resolution modelling to inform decision makers in marine management	12
A multispecies size-structured matrix model incorporating seasonal dynamics	12
Preparing for and managing crown-of-thorns starfish outbreaks on reefs under threat from interacting anthropogenic stressors	12
Modeling terrestrial net ecosystem exchange using machine learning techniques based on flux tower measurements	12
Attractor of a neutral individual-based forest model captures spatiotemporal structure characteristics of a mature tropical forest	12
A spatially explicit model of tree leaf litter accumulation in fire maintained longleaf pine forests of the southeastern US	12
The impact of dynamic wind flow behavior on forest fire spread using cellular automata: Application to the watershed BOUKHALEF (Morocco)	12
Multiscale habitat suitability modeling for a threatened raptor offers insight into ecological model transferability	12
Coefficients of association between nominal and fully ranked ordinal variables with applications to ecological network analysis	12
Corrigendum to ‘Modeling mixoplankton along the biogeochemical gradient of the Southern North Sea’ Ecological Modelling 458 (2021) 0304-3800/109690	12
Growth acceleration is the key for identifying the most favorable food concentration of Artemia sp.	12
Predicting shifts in demography of Orbicella franksi following simulated disturbance and restoration	12
Does climate change stimulate citizens' responses to conserving urban forest? Insights from stimulus-organism-response theory	12
Simulating critical nutrient loadings of regime shift in the shallow plateau Lake Dianchi	12
New applications of an old individual-based model for biological dynamics	12
Self-healing time of population under dynamic disturbance	12
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Controls and characteristics of biomass quantization in size-structured planktonic ecosystem models	12
Decoding information in multilayer ecological networks: The keystone species case	12
Modelling the effects of urbanization on nutrients pollution for prospective management of a tropical watershed: A case study of Skudai River watershed	11
Development of models for sustainable green mussel cultivation under climate change events	11
Insights into the environmental conditions contributing to variability in the larval recruitment of the tropical sardine Sardinella lemuru	11
A new interval meta-goal programming for sustainable planning of agricultural water-land use nexus	11
Impacts of land-use intensity on ecosystems stability	11
A quantitative application of diffusion of innovations for modeling the spread of conservation behaviors	11
Dryland vegetation pattern dynamics driven by inertial effects and secondary seed dispersal	11
Spatiotemporal changes of ecosystem services value by incorporating planning policies: A case of the Pearl River Delta, China	11
Impact of different invasion methods of invasive species on omnivorous food webs	11
Quantitative evaluation of the effects of bycatch on native species using mathematical models	11
The application of a plant community model to evaluate adaptation strategies for alleviating climate change impacts on grassland productivity, biodiversity and forage quality	11
A data-driven high spatial resolution model of biomass accumulation and crop yield: Application to a fragmented desert-oasis agroecosystem	11
Editorial Board	10
Disentangling the relative influence of regeneration processes on marsh plant assembly with a stage-structured plant assembly model	10
Fungal pathogen transmission dynamics in North American salamanders: Mathematical insights for disease management	10
Modeling the temporal dynamics of gut microbiota from a local community perspective	10
Climate covariate selection influences MaxEnt model predictions and predictive accuracy under current and future climates	10

Bifurcation analysis and global dynamics in a predator–prey system of Leslie type with an increasing functional response	10
Potential thermal safety margin for plant photosynthesis derived from local temperature variability	10
Production potential of seaweed and shellfish integrated aquaculture in Narragansett Bay (Rhode Island, U.S.) using an ecosystem model	10
Corrigendum to "Comparing the performance of global, geographically weighted and ecologically weighted species distribution models for Scottish wildcats using GLM and Random Forest predictive modeling	10
The emergence of imperfect philopatry and fidelity in spatially and temporally heterogeneous environments	10
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A GIS-based approach for managing catch-and-release fisheries	10
The integration of hierarchical levels of scale in tree species distribution models of silver fir (Abies alba Mill.) and European beech (Fagus sylvatica L.) in mountain forests	10
System evolution model of human disturbances in panda habitats	10
Integrating metabolic scaling variation into the maximum entropy theory of ecology explains Taylor's law for individual metabolic rate in tropical forests	10
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Sampling effort required for fitting spatially explicit models of species distribution dynamics	10
Multi-objective optimization of forest ecosystem services under uncertainty	10
A computational model approach to assess the effect of climate change on the growth and development of tadpoles	10
Bayesian multi-level calibration of a process-based maize phenology model	10
Transient perturbations reveal distinct strategies for reserve benefits in life history-dependent ecosystems	9
Landscape ecology and urban spatial configuration: Exploring a methodological relationship. Application in Pelotas, Brazil	9
How much is enough? Optimizing beehive stocking densities to maximize the production of a pollinator-dependent crop	9
Methods for comparing theoretical models parameterized with field data using biological criteria and Sobol analysis	9
Resilience, indirect effects and cycling in ecological networks	9
Growing at the edge: Modelling sapling colonization, performance, and effective range of mountain birch (Betula pubescens ssp. tortuosa)	9
Contrasting occupancy models with presence-only models: Does accounting for detection lead to better predictions?	9
Modelling farmland dynamics in response to farmer decisions using an advanced irrigation-related agent-based model	9
Evaluating the skill of correlative species distribution models trained with mechanistic model output	9
Constructing time-series submerged aquatic vegetation by integrating process-based modeling and satellite images	9
Nonlinear impacts of climate change on dengue transmission in mainland China: Underlying mechanisms and future projection	9
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Climatic sensitivity of seasonal ice-cover, water temperature and biogeochemical cycling in Lake 239 of the Experimental Lakes Area (ELA), Ontario, Canada	9
Modeling urban growth effects on carrying capacity in arid and semi-arid regions using system dynamics	9
Forecasting impacts of biological control under future climates: mechanistic modelling of an aphid pest and a parasitic wasp	9
Sustainable development of territorial units: MCDM approach with optimal tail selection	9
Which rice farming system is more environmentally friendly in Khuzestan province, Iran? A study based on emergy analysis	9
Using a time-dynamic food web model to compare predation and fishing mortality in Pleuroncodes monodon (Galatheidae: Crustaceae) and other benthic and demersal resource species off central Chile	9
Spatial structure of natural boxwood and the invasive box tree moth can promote coexistence	9
Integrating equity and justice in marine ecosystem models: An incremental but meaningful approach	9
Computational assessment of Amazon forest plots regrowth capacity under strong spatial variability for simulating logging scenarios	9
Landscape-scale drivers of endangered Cape Sable Seaside Sparrow (Ammospiza maritima mirabilis) presence using an ensemble modeling approach	9
Using system equalization principle to study the effects of multiple factors to the development of bee colony	9
Temporal transferability of species abundance models to study the changes of breeding bird species based on land cover changes	9
Multi-sectoral analysis of smarter urban nitrogen metabolism: A case study of Suzhou, China	9
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Effect of study area extent on the potential distribution of Species: A case study with models for Raoiella indica Hirst (Acari: Tenuipalpidae)	9
Changes in algal bloom dynamics in a regulated large river in response to eutrophic status	9
Fish survival subject to algal bloom: Resource-based growth models with algal digestion delay and detritus-nutrient recycling delay	9
Analysis of a mathematical model for golden mussels infestation	9
Modeling Tree Recovery in Wind-Disturbed Forests with Dense Understory Species under Climate Change	9
The potential impacts of climate change on the distribution of key tree species and Cordyceps in Bhutan: Implications for ecological functions and rural livelihoods	9
Productivity-environment models for Scots pine plantations in Bulgaria: an interaction of anthropogenic origin peculiarities and climate change	9
Spatiotemporal evolution of county level ecological security based on an emergy ecological footprint model: The case of Dingxi, China	9
Toward a better understanding of forest spatial patterns:A generalisation of the uniform angle index	9
Using the roughness height and manning number in hydrodynamic model to estimate the impact of intensive oyster aquaculture by floating & fixed rafts on water exchange with an application in Qinzho	9
Using the ODD protocol and NetLogo to replicate agent-based models	9
Analysis of the sustainability index for ecologically low-input integrated farming: A comprehensive assessment of environmental, economic, and social impact	9
Combined climate and regional mosquito habitat model based on machine learning	9
Improving forest gross primary productivity estimation through climate and trait integration	9
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Ecological flow considering hydrological season and habitat suitability for a variety of fish	9
Modeling food dependent symbiosis in Exaiptasia pallida	9
Modelling the spatial shifts of functional groups in the Barents Sea using a climate-driven spatial food web model	9
Investigating the interactions between Chinese economic growth, energy consumption and its air environmental cost during 1989–2016 and forecasting their future trends	8
Development of interval transient pollution distribution model and its application in the Fenghuangshan drinking water source	8
Competition in forest plantations: Empirical and process-based modelling in pine and eucalypt plantations	8
Using structural equation models (SEM) to link climate change, forest composition, deer, and outdoor recreation	8
Optimization of deep learning model for coastal chlorophyll a dynamic forecast	8
Interpreting stoichiometric homeostasis and flexibility of soil microbial biomass carbon, nitrogen, and phosphorus	8
Model-based experiments as epistemic evidence in paleoecology	8
Analytical model for pullout behavior of root system	8
Emergy theory to quantify the sustainability of large cascade hydropower projects in the upper Yangtze	8
Simulating implications of fish behavioral response for managing hypoxia in estuaries with spatial dissolved oxygen variability	8
Information sharing promotes bacterial diversity in oligotrophic environment with low-dose X-ray radiation based on modeling and simulation of agent-based model	8
Editorial Board	8
Combined influences of environmental enrichment and harvesting mediate rich dynamics in an intraguild predation fishery system	8
The Chesapeake Bay program modeling system: Overview and recommendations for future development	8
What grows, adapts and lives in the digital sphere? Systematic literature review on the dynamic modelling of flora and fauna in digital twins	8
Investigating the need to replace the conventional method of sugar beet production in lorestan province, iran based on the arguments obtained from emergy calculations	8
The influence of phytoplankton size fractions on the carbon export ratio in the surface ocean	8
On the use of machine learning methods to improve the estimation of gross primary productivity of maize field with drip irrigation	8
Evolution of the concept of ecological integrity and its study through networks	8
Assessing bivalve growth using bio-energetic models	8
Modelling parasite-produced marine diseases: The case of the mass mortality event of Pinna nobilis	8
A novel approach to explicitly model the spatiotemporal impacts of structural complexity created by alien ecosystem engineers in a marine benthic environment	8
Defaunation and changes in climate and fire frequency have synergistic effects on aboveground biomass loss in the brazilian savanna	8
Using GIS-based multicriteria decision analysis to prioritize invasive plant treatment: A creative solution for a pernicious problem	8
LoggingLab: An R package to simulate reduced-impact selective logging in tropical forests using forest inventory data	8
Diffusivity and bias movement velocity of Cryptolestes ferrugineus (Coleoptera: Laemophloeidae) adults under different temperature and moisture differences	8
Are maximum yields sustainable? Effect of intra-annual time-scales on MSY, stability and resilience	8
Integration of life cycle and habitat conditions in modeling fish biomass in the floodplain of the Lower Mekong Basin	8
Dynamics of a coupled socio-environmental model: An application to global CO2 emissions	7
Dynamic distribution modelling using a native invasive species, the mountain pine beetle	7
Modelling human influences on biodiversity at a global scale–A human ecology perspective	7
Modelling peatland development in high-boreal Quebec, Canada, with DigiBog_Boreal	7
Competitive superiority of N-fixing cyanobacteria when fixed N is scarce: Reconsiderations based on a model with heterocyst differentiation	7
Overcoming conceptual hurdles to accurately represent trees as cohorts in forest landscape models	7
A Bayesian network with fuzzy mathematics for species habitat suitability analysis: A case with limited Angelica sinensis (Oliv.) Diels data	7
Modeling Potential production and yield gap of potato using modelling and GIS approaches	7