Ecological Modelling

Article	Citations
Want to model a species niche? A step-by-step guideline on correlative ecological niche modelling	136
Spatial cross-validation is not the right way to evaluate map accuracy	90
Dealing with overprediction in species distribution models: How adding distance constraints can improve model accuracy	73
Challenges, tasks, and opportunities in modeling agent-based complex systems	67
Projecting effects of land use change on human well-being through changes in ecosystem services	61
A model of Sustainable Development Goals: Challenges and opportunities in promoting human well-being and environmental sustainability	60
Predicting lake surface water phosphorus dynamics using process-guided machine learning	50
Spatiotemporal differentiation of coupling coordination degree between economic development and water environment and its influencing factors using GWR in China's province	46
Modeling interactions among multiple ecosystem services. A critical review	46
A Production–Living–Ecological Space Model for Land-Use Optimisation: A case study of the core Tumen River region in China	45
A functional size-spectrum model of the global marine ecosystem that resolves zooplankton composition	44
Temperature coefficient (Q10) and its applications in biological systems: Beyond the Arrhenius theory	42
Improving species distribution model predictive accuracy using species abundance: Application with boosted regression trees	42
Operationalising resilience: A methodological framework for assessing urban resilience through System Dynamics Model	40
Determining agricultural suitable land in peri-urban geography using GIS and Multi Criteria Decision Analysis (MCDA) techniques	39
Dynamic simulation patterns and spatiotemporal analysis of land-use/land-cover changes in the Wuhan metropolitan area, China	38
Long-term assessment of land-use and climate change on water scarcity in an arid basin in Iran	37
Rice plant disease classification using dilated convolutional neural network with global average pooling	36
Presence-only species distribution models are sensitive to sample prevalence: Evaluating models using spatial prediction stability and accuracy metrics	36
Microclimc: A mechanistic model of above, below and within-canopy microclimate	36
Ecosystem-scale nutrient cycling responses to increasing air temperatures vary with lake trophic state	33
Evaluation of the sustainability of four greenhouse vegetable production ecosystems based on an analysis of emergy and social characteristics”	32
A global-scale ecological niche model to predict SARS-CoV-2 coronavirus infection rate	31
The Chesapeake Bay program modeling system: Overview and recommendations for future development	31
Marine natural capital and ecosystem services: An environmental accounting model	30

Spatial estimation of outdoor NO2 levels in Central London using deep neural networks and a wavelet decomposition technique	29
Simulated growth and reproduction of green turtles (Chelonia mydas) under climate change and marine heatwave scenarios	28
Evaluating old community renewal based on emergy analysis: A case study of Nanjing	27
Facilitation and competition reduction in tree species mixtures in Central Europe: Consequences for growth modeling and forest management	27
Agricultural land use and the sustainability of social-ecological systems	26
Assessment and a review of research on surface water quality modeling	25
The impact of data quality filtering of opportunistic citizen science data on species distribution model performance	24
Sensitivity analysis using Morris: Just screening or an effective ranking method?	23
Impact of environmental variability on Pinctada margaritifera life-history traits: A full life cycle deb modeling approach	23
Adaptability analysis of water pollution and advanced industrial structure in Jiangsu Province, China	22
A dynamic energy budget model for small yellow croaker Larimichthys polyactis: Parameterisation and application in its main geographic distribution waters	21
An improved estimation of net primary productivity of grassland in the Qinghai-Tibet region using light use efficiency with vegetation photosynthesis model	21
Ecological carrying capacity and sustainability assessment for coastal zones: A novel framework based on spatial scene and three-dimensional ecological footprint model	21
Using species distribution models only may underestimate climate change impacts on future marine biodiversity	21
Modelling Forest Ecosystems: a crossroad between scales, techniques and applications	20
The effect of tourism on teleconnected ecosystem services and urban sustainability: An emergy approach	20
Modelling prey-predator interactions in Messina beachrock pools	20
Extending community trajectory analysis: New metrics and representation	19
A mathematical model for Xylella fastidiosa epidemics in the Mediterranean regions. Promoting good agronomic practices for their effective control.	19
Research progress and hotspot analysis for reactive nitrogen flows in macroscopic systems based on a CiteSpace analysis	19
Conducting reproducible ecosystem modeling using the open source mass balance model Rpath	19
Modelling the control of Aedes albopictus mosquitoes based on sterile males release techniques in a tropical environment	19
Investigating the impact of the mycorrhizal inoculum on the resident fungal community and on plant growth	19
Environmental convergence and environmental Kuznets curve: A unified empirical framework	19
Modelling the effects of energy taxes on ecological footprint transfers in China's foreign trade	19
Modeling the Growth of Sugar Kelp (Saccharina latissima) in Aquaculture Systems using Dynamic Energy Budget Theory	19
The Canadian model for peatlands (CaMP): A peatland carbon model for national greenhouse gas reporting	19
Ocean acidification and dynamic energy budget models: Parameterisation and simulations for the green-lipped mussel	18
The coordination between maritime economies and marine carrying capacity and their spatiotemporal evolution in the cities of the bohai rim in china	18
Modelling the trophic roles of the demersal Chondrichthyes in the Northern Ionian Sea (Central Mediterranean Sea)	18
Changes in soil carbon stocks under plantation systems and natural forests in Northeast India	18
Comparing maximum entropy modelling methods to inform aquaculture site selection for novel seaweed species	18
The standard dynamic energy budget model has no plausible alternatives	18
The effect of green roofs on the reduction of mortality due to heatwaves: Results from the application of a spatial microsimulation model to four European cities	18
Modeling lives saved from extreme heat by urban tree cover✰	18
Estimating slope stability by the root reinforcement mechanism of Artemisia sacrorum on the Loess Plateau of China	18
Modeling dissolved inorganic carbon considering submerged aquatic vegetation	18
Sensitivity of Vegetation Growth to Precipitation in a Typical Afforestation Area in the Loess Plateau: Plant-Water Coupled Modelling	18
Study on turbidity prediction method of reservoirs based on long short term memory neural network	18
Generalized stability conditions for host–parasitoid population dynamics: Implications for biological control	17
A novel spatio-temporal cellular automata model coupling partitioning with CNN-LSTM to urban land change simulation	17
Modeling air quality regulation by green infrastructure in a Mediterranean coastal urban area: The removal of PM10 in the Metropolitan City of Naples (Italy)	17
Spatiotemporal changes of ecosystem services value by incorporating planning policies: A case of the Pearl River Delta, China	17
Integrated impacts of vegetation and soil type on slope stability: A case study of Kheyrud Forest, Iran	17
Modeling soil porewater salinity in mangrove forests (Everglades, Florida, USA) impacted by hydrological restoration and a warming climate	17
A curated list of R packages for ecological niche modelling	16
Spatial conservation planning under uncertainty using modern portfolio theory and Nash bargaining solution	16
Energetics as common currency for integrating high resolution activity patterns into dynamic energy budget-individual based models	16
Effects of swimming behaviour and oceanography on sea turtle hatchling dispersal at the intersection of two ocean current systems	16
Environmental and behavioral controls on juvenile Chinook salmon migration pathways in the Columbia River estuary	16

Farm monitoring and disease prediction by classification based on deep learning architectures in sustainable agriculture	16
Defaunation and changes in climate and fire frequency have synergistic effects on aboveground biomass loss in the brazilian savanna	16
Ecological risk assessment of heavy metal contamination of mining area soil based on land type changes: An information network environ analysis	16
The impact of converting waste into resources on the regional economy, evidence from Poland	16
Fine-tuning niche models matters in invasion ecology. A lesson from the land planarian Obama nungara.	16
A new nearest-neighbour index for monitoring spatial size diversity: The hyperbolic tangent index	15
Sustainable agriculture, food security and diet diversity. The case study of Tuscany, Italy.	15
A dynamic growth model of Ulva prolifera: Application in quantifying the biomass of green tides in the Yellow Sea, China	15
Insights on integrating habitat preferences in process-oriented ecological models – a case study of the southern North Sea	15
Population dynamics of Varroa mite and honeybee: Effects of parasitism with age structure and seasonality	15
A temperature- and photoperiod-driven model reveals complex temporal population dynamics of the invasive box tree moth in Europe	15
Changes in algal bloom dynamics in a regulated large river in response to eutrophic status	15
Ecosystem based multi-species management using Empirical Dynamic Programming	15
The economics of territory selection	15
Modelling the effectiveness of collaborative schemes for disease and pest outbreak prevention	15
Modelling of land-use/cover change trajectories in a transboundary catchment of the Sio-Malaba-Malakisi Region in East Africa using the CLUE-s model	15
Impacts of climate change on biological rotation of Larix olgensis plantations for timber production and carbon storage in northeast China using the 3-PGmix model	15
A spatially explicit population model to compare management using culling and fertility control to reduce numbers of grey squirrels	15
The energetic basis of population growth in animal kingdom	14
Quantitative food web modeling unravels the importance of the microphytobenthos-meiofauna pathway for a high trophic transfer by meiofauna in soft-bottom intertidal food webs.	14
A hierarchical framework for mapping pollination ecosystem service potential at the local scale	14
A scenario-based approach to tackle trade-offs between biodiversity conservation and land use pressure in Central Italy	14
Improving confidence in complex ecosystem models: The sensitivity analysis of an Atlantis ecosystem model	14
Integrated ecosystem impacts of climate change and eutrophication on main Baltic fishery resources	14
Exploring trophic interactions and cascades in the Baltic Sea using a complex end-to-end ecosystem model with extensive food web integration	14
Spatial E-PSR modelling for ecological sensitivity assessment for arid rangeland resilience and management	14
Integrating dynamic plant growth models and microclimates for species distribution modelling	14
High spatial resolution bioclimatic variables to support ecological modelling in a Mediterranean biodiversity hotspot	14
A box-model of carrying capacity of the Thau lagoon in the context of ecological status regulations and sustainable shellfish cultures	14
Computer simulation modelling of the simultaneous adsorption of Cd, Cu and Cr from aqueous solutions by agricultural clay soil: A PHREEQC geochemical modelling code coupled to parameter estimation (PE	14
Agroecological modeling of nitrogen and carbon transfers between decomposer micro-organisms, plant symbionts, soil and atmosphere in an intercropping system	14
RESTREND-based assessment of factors affecting vegetation dynamics on the Mongolian Plateau	13
Modelling population dynamics based on experimental trials with genetically modified (RIDL) mosquitoes	13
Using the Dynamic Energy Budget theory to evaluate the bioremediation potential of the polychaete Hediste diversicolor in an integrated multi-trophic aquaculture system	13
Fully Convolutional Neural Network: A solution to infer animal behaviours from multi-sensor data	13
Movement, models, and metabolism: Individual-based energy budget models as next-generation extensions for predicting animal movement outcomes across scales	13
Performance of a process-based model for predicting robusta coffee yield at the regional scale in Vietnam	13
Exploring the option space for land system futures at regional to global scales: The diagnostic agro-food, land use and greenhouse gas emission model BioBaM-GHG 2.0	12
Modeling Potential production and yield gap of potato using modelling and GIS approaches	12
Modelling human influences on biodiversity at a global scale–A human ecology perspective	12
Estimating the fundamental niche: Accounting for the uneven availability of existing climates in the calibration area	12
Coronavirus outbreak is a symptom of Gaia's sickness	12
Disentangling the biotic and abiotic drivers of emergent migratory behavior using individual-based models	12
The impact of intensive management on net ecosystem productivity and net primary productivity of a Lei bamboo forest	12
Choice of climate data affects the performance and interpretation of species distribution models.	12
Mathematical comparison and empirical review of the Monod and Droop forms for resource-based population dynamics	12
The use of augmented loss functions for estimating dynamic energy budget parameters	12
Global assessment of marine phytoplankton primary production: Integrating machine learning and environmental accounting models	12
Habitat succession of the Yangtze finless porpoise in Poyang Lake under the changing hydrodynamic and feeding environment	12
An Ecopath with Ecosim model for the Pacific coast of eastern Japan: Describing the marine environment and its fisheries prior to the Great East Japan earthquake	12
The hitchhiker's guide to generic ecological-economic modelling of land-use-based biodiversity conservation policies	11
Examining spatial carbon metabolism: Features, future simulation, and land-based mitigation	11
Effect of feedback loops on the sustainability and resilience of human-ecosystems	11
Assessing the sensitivity of three Alaska marine food webs to perturbations: an example of Ecosim simulations using Rpath	11
Competitive superiority of N-fixing cyanobacteria when fixed N is scarce: Reconsiderations based on a model with heterocyst differentiation	11
Improving species distribution models for dominant trees in climate data-poor forests using high-resolution remote sensing	11
Changes in sessile oak (Quercus petraea) productivity under climate change by improved leaf phenology in the 3-PG model	11
High-resolution PVA along large environmental gradients to model the combined effects of climate change and land use timing: lessons from the large marsh grasshopper	11
A general ODE-based model to describe the physiological age structure of ectotherms: Description and application to Drosophila suzukii	11
Critical connectivity thresholds and the role of temperature in parasite metapopulations	11
Influences of traits and processes on productivity and functional composition in grasslands: A modeling study	11
Combined climate and regional mosquito habitat model based on machine learning	11
Socio-ecological systems modelling of coastal urban area under a changing climate – Case study for Ubatuba, Brazil	11
A simple modelling tool for assessing interaction with host and local infestation of sea lice from salmonid farms on wild salmonids based on processes operating at multiple scales in space and time	11
Review of application of EPIC crop growth model	11
Estimating the Value of Global Ecosystem Structure and Productivity: A Geographic Information System and Emergy Based Approach	11
Sustainability assessment of agriculture production systems in Pakistan: A provincial-scale energy-based evaluation	11
Modeling watershed carbon dynamics as affected by land cover change and soil erosion	11
Building shading affects the ecosystem service of urban green spaces: Carbon capture in street canyons	10
Assessing errors during simulation configuration in crop models – A global case study using APSIM-Potato	10
DynaGraM: A process-based model to simulate multi-species plant community dynamics in managed grasslands	10
Multiple working hypotheses for hyperallometric reproduction in fishes under metabolic theory	10
Construction of ecological security pattern based on ecological carrying capacity assessment 1990–2040: A case study of the Southwest Guangxi Karst - Beibu Gulf	10
Modeling dissolved oxygen in a crab pond	10
The impact analysis of media attention on local environmental governance based on four-party evolutionary game	10
Understanding resilience of farming systems: Insights from system dynamics modelling for an arable farming system in the Netherlands	10
Modeling structural mechanics of oyster reef self-organization including environmental constraints and community interactions	10
Effects of non-representative sampling design on multi-scale habitat models: flammulated owls in the Rocky Mountains.	10
Species-specific nature conservation prioritization (a combination of MaxEnt, Co$ting Nature and DINAMICA EGO modeling approaches)	10
Utilizing machine learning for detecting flowering in mid-range digital repeat photography	10

Sequential Monte-Carlo algorithms for Bayesian model calibration – A review and method comparison✰	10
Comparative study of two predatory mites Amblyseius swirskii Athias-Henriot and Transeius montdorensis (Schicha) by predator-prey models for improving biological control of greenhouse cucumber	9
A hierarchical Bayesian approach for incorporating expert opinions into parametric survival models: A case study of female Ixodes ricinus ticks exposed to various temperature and relative humidity con	9
Individual-based 3D modelling of root systems in heterogeneous plant canopies at the multiannual scale. Case study with a weed dynamics model	9
Model laboratories: A quick-start guide for design of simulation experiments for dynamic systems models	9
Reformulation of the Distributed Delay Model to describe insect pest populations using count variables	9
Ecophysics reload—exploring applications of theoretical physics in macroecology	9
The increasing contribution of greening to the terrestrial evapotranspiration in China	9
A standard protocol for describing the evaluation of ecological models	9
Projections of algae, eelgrass, and zooplankton ecological interactions in the inner Salish Sea – for future climate, and altered oceanic states	9
Integrated modelling of insect population dynamics at two temporal scales	9
Modelling the impact of climate change and tillage practices on soil CO2 emissions from dry farmland in the Loess Plateau of China	9
Modeling terrestrial net ecosystem exchange using machine learning techniques based on flux tower measurements	9
Quantifying the cost-effectiveness of nutrient-removal strategies for a lowland rural watershed: Insights from process-based modeling	9
General Landscape Connectivity Model (GLCM): a new way to map whole of landscape biodiversity functional connectivity for operational planning and reporting	9
Reflections of two systems ecologists on modelling coupled human and natural (socio-ecological, socio-environmental) systems	9
A spatially extended model to assess the role of landscape structure on the pollination service of Apis mellifera	9
Optimization of deep learning model for coastal chlorophyll a dynamic forecast	9
Predicting methane emissions from paddy rice soils under biochar and nitrogen addition using DNDC model	9
Estimating and comparing biodiversity with a single universal metric	9
The comparative energetics of petrels and penguins	9
Ecological network identification and connectivity robustness evaluation in the Yellow River Basin under a multi-scenario simulation	9
The water footprint of city naturalisation. Evaluation of the water balance of city gardens	9
Evaluating five forest models using multi-decadal inventory data from mountain forests	9
Incorporating environmental variability in a spatially-explicit individual-based model of European sea bass✰	9
Can DEB models infer metabolic differences between intertidal and subtidal morphotypes of the Antarctic limpet Nacella concinna (Strebel, 1908)?	9
Mini-review of process-based food web models and their application in aquatic-terrestrial meta-ecosystems	9
The impacts of vegetation on the soil surface freezing-thawing processes at permafrost southern edge simulated by an improved process-based ecosystem model	9
A three-dimensional Lagrangian particle tracking model for predicting transport of eggs of rheophilic-spawning carps in turbulent rivers	9
A dynamic energy budget model of Fenneropenaeus chinensis with applications for aquaculture and stock enhancement	9
AgentSeal: Agent-based model describing movement of marine central-place foragers	9
An agent-based model to simulate the boosted Sterile Insect Technique for fruit fly management	9
Predicting geographic distributions of fishes in remote stream networks using maximum entropy modeling and landscape characterizations	9
A physical-biological coupled ecosystem model for integrated aquaculture of bivalve and seaweed in sanggou bay	9
Impacts of land-use intensity on ecosystems stability	9
Dynamic energy budget of endemic and critically endangered bivalve Pinna nobilis: A mechanistic model for informed conservation	9
The importance of plant trait variability in grasslands: a modelling study	8
A process-based model to forecast risk of potato late blight in Norway (The Nærstad model): model development, sensitivity analysis and Bayesian calibration	8
Mitigation pathways towards climate change: Modelling the impact of climatological factors on wheat production in top six regions of China	8
Evaluation of spatio-temporal variations in water availability using a process-based eco-hydrology model in arid and semi-arid regions of Mongolia	8
Considering coasts: Adapting terrestrial models to characterize coastal wetland ecosystems	8
An individual-based model to assess the spatial and individual heterogeneity of Brucella melitensis transmission in Alpine ibex	8
A consistent calibration across three wheat models to simulate wheat yield and phenology in China	8
Factors controlling long-term carbon dioxide exchange between a Douglas-fir stand and the atmosphere identified using an artificial neural network approach	8
Sensitivity of aboveground biomass and species composition to climate change in boreal forests of Northeastern China	8
Growth acceleration is the key for identifying the most favorable food concentration of Artemia sp.	8
Subnational carbon flow pattern analysis using multi-scale input-output model	8
A Systematic National Stocktake of Crop Models in Morocco	8
Key factors affecting discharge, soil erosion, nitrogen and phosphorus exports from agricultural polder	8
Forecasting Pacific saury (Cololabis saira) fishing grounds off Japan using a migration model driven by an ocean circulation model	8
Quantifying the GCM-related uncertainty for climate change impact assessment of rainfed rice production in Cambodia by a combined hydrologic - rice growth model	8
Assessing the impacts of agricultural conservation practices on freshwater biodiversity under changing climate	8
Cautions in weighting individual ecological niche models in ensemble forecasting	8
HyDiaD: A hybrid species distribution model combining dispersal, multi-habitat suitability, and population dynamics for diadromous species under climate change scenarios	8
Quantifying tradeoffs between electricity generation and fish populations via population habitat duration curves	8
Predicting the potential impact of forest fires on runoff and sediment loads using a distributed hydrological modeling approach	8
Modelling the impacts of changing land use and climate on sediment and nutrient retention in Lake Tana Basin, Upper Blue Nile River Basin, Ethiopia	8
Investigating the interactions between Chinese economic growth, energy consumption and its air environmental cost during 1989–2016 and forecasting their future trends	8
Dynamics of a stochastic nutrient–plankton model with regime switching	8
State- and context-dependent applications of an energetics model in free-ranging bighorn sheep	8
A comparison of machine learning and statistical species distribution models: Quantifying overfitting supports model interpretation	8
Biological control of the chaotic sugarcane borer-parasitoid agroecosystem	8
Contrasting occupancy models with presence-only models: Does accounting for detection lead to better predictions?	8
Potential elevation shift of oriental beech (Fagus orientalis L.) in Hyrcanian mixed forest ecoregion under future global warming	8
Contribution of a bioenergetics model to investigate the growth and survival of European seabass in the Bay of Biscay – English Channel area	8
Emergy-based sustainability analysis of bioenergy production from marginal and degraded lands of India	8
Using the standard DEB animal model for toxicokinetic-toxicodynamic analysis	8
Agent-based modelling of juvenile eel migration via selective tidal stream transport	8
TRIPLEX-Mortality model for simulating drought-induced tree mortality in boreal forests: Model development and evaluation	8
Modelling the effects of climate, predation, and dispersal on the poleward range expansion of black mangrove (Avicennia germinans)	8
Kinetics of phosphate uptake in the dinoflagellate Karenia mikimotoi in response to phosphate stress and temperature	8
Testing MaxEnt model performance in a novel geographic region using an intentionally introduced insect	8
A less data demanding ecophysiological niche modeling approach for mammals with comparison to conventional correlative niche modeling	8
Computational applications of extended SIR models: A review focused on airborne pandemics	8
Integration of local knowledge and data for spatially quantifying ecosystem services in the Hoeksche Waard, the Netherlands	8
Assessing the dynamics of hybridization through a matrix modelling approach	8
The impact of seasonal regulation of metabolism on the life history of Antarctic krill	8
A new parametric measure of functional dissimilarity: Bridging the gap between the Bray-Curtis dissimilarity and the Euclidean distance	8
Simulating the effects of aquatic avifauna on the Phosphorus dynamics of aquatic systems	8
Ecohydraulic tools for aquatic fauna habitat and population status assessment, analysis and monitoring aimed at promoting integrated river management	8
Correcting for size bias in electrofishing removal samples	8
Investigation of ecologically relevant wind patterns on Marion Island using Computational Fluid Dynamics and measured data	8
Spatial structure of natural boxwood and the invasive box tree moth can promote coexistence	8
Seed bank as a persistent problem in matrix population models: From uncertainty to certain bounds	8
Three-dimensional biogeochemical modeling of eutrophication in Edmonton stormwater ponds	8
Performance comparison of sewage treatment plants before and after their upgradation using emergy evaluation combined with economic analysis: A case from Southwest China	8
A coupled ecohydrodynamic model to predict algal blooms in Lake Titicaca	8
Improving the predictive performance of CLUE-S by extending demand to land transitions: The trans-CLUE-S model	8
Species distribution models applied to mosquitoes: Use, quality assessment, and recommendations for best practice	7
Analyzing socio-ecological interactions through qualitative modeling: Forest conservation and implications for sustainability in the peri‑urban bogota (Colombia)	7
Identification and analysis of areas prone to conflict with wild boar (Sus scrofa) in the vineyards of Malayer County, western Iran	7
Pairwise learning for predicting pollination interactions based on traits and phylogeny	7
A bioenergetics model for seasonal growth of Indian oil sardine (Sardinella longiceps) in the Indian west coast	7
A tritrophic interaction model for an olive tree pest, the olive moth — Prays oleae (Bernard)	7
Model-based data analysis of the effect of winter mixing on primary production in a lake under reoligotrophication	7