Molecular Biology and Evolution

Article	Citations
PHACE: Phylogeny-Aware Detection of Molecular Coevolution	1023
Genome-wide Parallelism Underlies Rapid Freshwater Adaptation Fueled by Standing Genetic Variation in a Wild Fish	467
Multilevel Gene Expression Changes in Lineages Containing Adaptive Copy Number Variants	151
Adaptation of Antarctic Icefish Vision to Extreme Environments	140
Bidirectional Movement of Emerging H5N8 Avian Influenza Viruses Between Europe and Asia via Migratory Birds Since Early 2020	134
Brief Communication: The Predictable Network Topology of Evolutionary Genomic Constraint	118
Evolutionary Processes in the Emergence and Recent Spread of the Syphilis Agent,Treponema pallidum	105
Germ Granule Evolution Provides Mechanistic Insight into Drosophila Germline Development	104
Evolution of Sex-Biased Gene Expression During Transitions to Separate Sexes in the Silene Genus	101
How Did Evolution Halve Genome Size During an Oceanic Island Colonization?	99
A General Substitution Matrix for Structural Phylogenetics	95
An Ancestral Major Histocompatibility Complex Organization in Cartilaginous Fish: Reconstructing MHC Origin and Evolution	88
The Interplay Between Developmental Stage and Environment Underlies the Adaptive Effect of a Natural Transposable Element Insertion	87
Elevated HIV Viral Load is Associated with Higher Recombination Rate In Vivo	84
Inference of Infectious Disease Transmission through a Relaxed Bottleneck Using Multiple Genomes Per Host	79
An evolutionarily conserved laterally acquired toolkit enables microbiota targeting by Trichomonas	72
Terrestrial Birth and Body Size Tune UCP1 Functionality in Seals	69
Evolution of Spatial and Temporalcis-Regulatory Divergence in Sticklebacks	68
Correction to: Complex Evolutionary History With Extensive Ancestral Gene Flow in an African Primate Radiation	68
Redefining the Limits of Functional Continuity in the Early Evolution of P-Loop NTPases	67
Highlight: Unmasking the Supergene Beneath the Ruff's Mating Strategies	66
Functional Divergence in a Multi-gene Family Is a Key Evolutionary Innovation for Anaerobic Growth in Saccharomyces cerevisiae	66
Transposable Element Diversity and Activity Patterns in Neotropical Salamanders	64
Whole-genome Comparisons Identify Repeated Regulatory Changes Underlying Convergent Appendage Evolution in Diverse Fish Lineages	64
The Human Developing Cerebral Cortex Is Characterized by an Elevated De Novo Expression of Long Noncoding RNAs in Excitatory Neurons	62

Rewiring the Sex-Determination Pathway During the Evolution of Self-Fertility	61
Odd-Paired is Involved in Morphological Divergence of Snail-Feeding Beetles	60
New Phylogenetic Models Incorporating Interval-Specific Dispersal Dynamics Improve Inference of Disease Spread	55
Chromatin Accessibility and Gene Expression Vary Between a New and Evolved Autopolyploid of Arabidopsis arenosa	55
UPrimer: A Clade-Specific Primer Design Program Based on Nested-PCR Strategy and Its Applications in Amplicon Capture Phylogenomics	54
Inference of Gene Flow between Species under Misspecified Models	52
Prevalent Introgression Underlies Convergent Evolution in the Diversification ofPungitiusSticklebacks	52
Polishing De Novo Nanopore Assemblies of Bacteria and Eukaryotes With FMLRC2	50
Genetic Differentiation is Constrained to Chromosomal Inversions and Putative Centromeres in Locally Adapted Populations With Higher Gene Flow	49
HaploSweep: Detecting and Distinguishing Recent Soft and Hard Selective Sweeps through Haplotype Structure	49
A Small Change With a Twist Ending: A Single Residue in EGF-CFC Drives Bilaterian Asymmetry	48
FishmiRNA: An Evolutionarily Supported MicroRNA Annotation and Expression Database for Ray-Finned Fishes	48
The Demographic History of Populations and Genomic Imprinting have Shaped the Transposon Patterns in Arabidopsis lyrata	47
Phylogenomic Analyses Reveal that Panguiarchaeum Is a Clade of Genome-Reduced Asgard Archaea Within the Njordarchaeia	47
Selection Can Favor a Recombination Landscape That Limits Polygenic Adaptation	45
Phylogeography Reveals Association between Swine Trade and the Spread of Porcine Epidemic Diarrhea Virus in China and across the World	45
Disentangling Signatures of Selection Before and After European Colonization in Latin Americans	45
Weighting by Gene Tree Uncertainty Improves Accuracy of Quartet-based Species Trees	44
Evolution of Brain-Expressed Biogenic Amine Receptors into Olfactory Trace Amine-Associated Receptors	44
Inference of Coalescence Times and Variant Ages Using Convolutional Neural Networks	43
Unequally Abundant Chromosomes and Unusual Collections of Transferred Sequences Characterize Mitochondrial Genomes of Gastrodia (Orchidaceae), One of the Largest Mycoheterotrophic Plant Genera	43
fastDFE: Fast and Flexible Inference of the Distribution of Fitness Effects	42
The Scorpionfly (Panorpa cognata) Genome Highlights Conserved and Derived Features of the Peculiar Dipteran X Chromosome	42
Convergent Evolution of Cysteine-Rich Keratins in Horny Teeth of Jawless Vertebrates and in Cornified Skin Appendages of Amniotes	41
Gene-by-environment Interactions and Adaptive Body Size Variation in Mice From the Americas	40
Functional Prokaryotic-Like Deoxycytidine Triphosphate Deaminases and Thymidylate Synthase in Eukaryotic Social Amoebae: Vertical, Endosymbiotic, or Horizontal Gene Transfer?	40
Duplication and Losses of Opsin Genes in Lophotrochozoan Evolution	40
Phosphate Limitation Responses in Marine Green Algae Are Linked to Reprogramming of the tRNA Epitranscriptome and Codon Usage Bias	40
Most m5C Modifications in Mammalian mRNAs are Nonadaptive	40
Degeneration of the Olfactory System in a Murid Rodent that Evolved Diurnalism	39
Episodes of Diversification and Isolation in Island Southeast Asian and Near Oceanian Male Lineages	38
Deleterious Mutations Accumulate Faster in Allopolyploid Than Diploid Cotton (Gossypium) and Unequally between Subgenomes	38
Tracing the Origin and Evolutionary Fate of Recent Gene Retrocopies in Natural Populations of the House Mouse	37
Ecological Diversification in an Adaptive Radiation of Plants: The Role of De Novo Mutation and Introgression	37
Correction to: The Impact of Genetic Surfing on Neutral Genomic Diversity	37
GroEL/S Overexpression Helps to Purge Deleterious Mutations and Reduce Genetic Diversity during Adaptive Protein Evolution	36
Influence of Gonadal and Chromosomal Sex on the Brain Transcriptome in a Mouse Species with Natural Sex Reversal	36
Comprehensive Genomic Analysis Reveals Novel Transposable Element-Derived MicroRNA Regulating Caste Differentiation in Honeybees	35
Convergent evolution and host-limiting impacts of SARS-CoV-2 revealed by cellular experiments	35
The Rich Evolutionary History of the Reactive Oxygen Species Metabolic Arsenal Shapes Its Mechanistic Plasticity at the Onset of Metazoan Regeneration	34
On the Decoupling of Evolutionary Changes in mRNA and Protein Levels	34
SegMantX: A Novel Tool for Detecting DNA Duplications Uncovers Prevalent Duplications in Plasmids	33
De Novo Assembly of 20 Chicken Genomes Reveals the Undetectable Phenomenon for Thousands of Core Genes on Microchromosomes and Subtelomeric Regions	33
A2B-COVID: A Tool for Rapidly Evaluating Potential SARS-CoV-2 Transmission Events	33
Functional Divergence of thebag-of-marblesGene in theDrosophila melanogasterSpecies Group	32
Genetic Variation in Reproductive Investment Across an Ephemerality Gradient inDaphnia pulex	31
Cytoplasmic Polyadenylation Is an Ancestral Hallmark of Early Development in Animals	31
Phylotranscriptomics Resolves the Phylogeny of Pooideae and Uncovers Factors for Their Adaptive Evolution	31
MicroRNAs as Indicators into the Causes and Consequences of Whole-Genome Duplication Events	30
Persistent, Private, and Mobile Genes: A Model for Gene Dynamics in Evolving Pangenomes	30

Evolutionary Process Underlying Receptor Gene Expansion and Cellular Divergence of Olfactory Sensory Neurons in Honeybees	30
TimeTree 5: An Expanded Resource for Species Divergence Times	30
Quantifying the Evolutionary Dynamics of Structure and Content in Closely Related E. coli Genomes	30
MEGA12: Molecular Evolutionary Genetic Analysis Version 12 for Adaptive and Green Computing	30
Genetic Incompatibilities and Evolutionary Rescue by Wild Relatives Shaped Grain Amaranth Domestication	30
Recurrent Duplication and Diversification of a Vital DNA Repair Gene Family Across Drosophila	30
Multiple Origins and Genomic Basis of Complex Traits in Sighthounds	30
Ecological Speciation Promoted by Divergent Regulation of Functional Genes Within African Cichlid Fishes	30
Divergent Cardiovascular Adaptations and Gene Regulation in High-Elevation Natives and Recent Colonizers of the Qinghai-Tibetan Plateau	29
ShiNyP: Unlocking SNP-Based Population Genetics—AI-Assisted Platform for Rapid and Interactive Visual Exploration	29
Using all Gene Families Vastly Expands Data Available for Phylogenomic Inference	29
The Number and Pattern of Viral Genomic Reassortments are not Necessarily Identifiable from Segment Trees	28
Deciphering the Impact of Temperature on Pleiotropic Consequences of RNA Polymerase Mutations	28
Quantifying the Evolution of SNPs That Affect RNA Secondary Structure in Arabidopsis thaliana Genes	28
Introducing the Y-chromosomal Ancestral-like Reference Sequence—Improving the Capture of Human Evolutionary Information	28
Host-Associated Genetic Differentiation in the Face of Ongoing Gene Flow: Ecological Speciation in a Pathogenic Parasite of Freshwater Fish	28
Adaptive Evolution of Nearctic Deepwater Fish Vision: Implications for Assessing Functional Variation for Conservation	28
Organism-Specific Sequence Motifs Link Ribosomal RNAs to Brain Disorders	28
Genomic Variation, Population History, and Long-Term Genetic Adaptation to High Altitudes in Tibetan Partridge (Perdix hodgsoniae)	28
Evolution of SL-RNA Genes and Their Splicing Targets in Parasitic Flatworms	27
The Genomic Basis of Evolutionary Novelties in a Leafhopper	27
Inference of the Demographic Histories and Selective Effects of Human Gut Commensal Microbiota Over the Course of Human History	27
A Quantitative Theory for Genomic Offset Statistics	27
PlantFUNCO: Integrative Functional Genomics Database Reveals Clues into Duplicates Divergence Evolution	27
Accounting for Errors in Data Improves Divergence Time Estimates in Single-cell Cancer Evolution	27
SARS-CoV-2 Evolution in Humans Enables its Transmission to Nonhuman Primates	27
Transcriptome-based Phylogeny of the Semi-aquatic Bugs (Hemiptera: Heteroptera: Gerromorpha) Reveals Patterns of Lineage Expansion in a Series of New Adaptive Zones	27
Revealing Reassortment in Influenza A Viruses with TreeSort	27
Toxin-Antitoxin Systems Reflect Community Interactions Through Horizontal Gene Transfer	27
ASTER: A Package for Large-Scale Phylogenomic Reconstructions	27
Earl Grey: A Fully Automated User-Friendly Transposable Element Annotation and Analysis Pipeline	27
Dating Ammonia-Oxidizing Bacteria with Abundant Eukaryotic Fossils	27
An Alternative Self-Splicing Intron Lifecycle Revealed by Dynamic Intron Turnover in Epichloë Endophyte Mitochondrial Genomes	26
Sympatric Recombination in Zoonotic Cryptosporidium Leads to Emergence of Populations with Modified Host Preference	26
Conservation of the Restricted Expression of Brassicaceae Bsister-Like Genes in Seeds Requires a Transposable Element in Arabidopsis thaliana	26
Hydrophobicity-Driven Increases in Editing in Mitochondrial mRNAs during the Evolution of Kinetoplastids	26
A Million Years of Mammoth Mitogenome Evolution	26
Shrinkage-based Random Local Clocks with Scalable Inference	25
Single-cell and Spatial Transcriptomics Illuminate Bat Immunity and Barrier Tissue Evolution	25
The Convergent Evolution of Hummingbird Pollination Results in Repeated Floral Scent Loss Through Gene Downregulation	25
Analysis of Evolutionary Conservation, Expression Level, and Genetic Association at a Genome-wide Scale Reveals Heterogeneity Across Polygenic Phenotypes	25
HaploBlocks: Efficient Detection of Positive Selection in Large Population Genomic Datasets	25
Antimutator and Mutational Spectrum Effects Can Combine to Reduce Evolutionary Potential in Escherichia coli ΔnudJ	25
Functional Characterization of Luciferase in a Brittle Star Indicates Parallel Evolution Influenced by Genomic Availability of Haloalkane Dehalogenase	25
Low Spontaneous Mutation Rate in Complex Multicellular Eukaryotes with a Haploid–Diploid Life Cycle	25
Climate Warming Since the Holocene Accelerates West–East Communication for the Eurasian Temperate Water Strider SpeciesAquarius paludum	25
The Carbon Footprint of Bioinformatics	25
Multiple Sources of Uncertainty Confound Inference of Historical Human Generation Times	24
A Near-Deterministic Mutational Hotspot in Pseudomonas fluorescens Is Constructed by Multiple Interacting Genomic Features	24
Histone H3K27 Methylation Perturbs Transcriptional Robustness and Underpins Dispensability of Highly Conserved Genes in Fungi	24
Adaptation and Cryptic Pseudogenization in Penguin Toll-Like Receptors	24
Resolving the Stasis-Dynamism Paradox: Genome Evolution in Tree Ferns	24
Redundant and Singular Regulatory Elements Underlie the Rapidly Evolving Pigmentation of Drosophila	24
A Thermodynamic Atlas of Proteomes Reveals Energetic Innovation across the Tree of Life	24
Challenging the Importance of Plastid Genome Structure Conservation: New Insights From Euglenophytes	24
Duplication and Specialization of NUDX1 in Rosaceae Led to Geraniol Production in Rose Petals	23
Erratum to: Adaptive Introgression Facilitates Adaptation to High Latitudes in European Aspen (Populus Tremula L.)	23
Y-Linked Copy Number Polymorphism of Target of Rapamycin Is Associated with Sexual Size Dimorphism in Seed Beetles	23
Functional Determinants and Evolutionary Consequences of Pleiotropy in Complex and Mendelian Traits	23
Measuring the Efficiency of Purging by non-random Mating in Human Populations	23
Loss of Timeless Underlies an Evolutionary Transition within the Circadian Clock	23
Cold-Driven Hemoglobin Evolution in Antarctic Notothenioid Fishes Prior to Hemoglobin Gene Loss in White-Blooded Icefishes	23
A General Principle of Neuronal Evolution Reveals a Human-Accelerated Neuron Type Potentially Underlying the High Prevalence of Autism in Humans	23
The Population History of Domestic Sheep Revealed by Paleogenomes	23
Between but Not Within-Species Variation in the Distribution of Fitness Effects	23
Decoding the Fundamental Drivers of Phylodynamic Inference	23
Whole-Genome Resequencing of Worldwide Wild and Domestic Sheep Elucidates Genetic Diversity, Introgression, and Agronomically Important Loci	23
The Genomic Landscapes of Desert Birds Form over Multiple Time Scales	23
Genetic and Anatomical Determinants of Olfaction in Dogs and Wild Canids	23
Uncovering the Genomic Basis of Infection Through Co-genomic Sequencing of Hosts and Parasites	22
Evolutionary Shortcuts via Multinucleotide Substitutions and Their Impact on Natural Selection Analyses	22
Genetic Diversity, Heteroplasmy, and Recombination in Mitochondrial Genomes ofDaphnia pulex,Daphnia pulicaria, andDaphnia obtusa	22
Putative Signals of Generalist Plant Species Adaptation to Local Pollinator Communities and Abiotic Factors	22
PRD-Class Homeobox Genes in Bovine Early Embryos: Function, Evolution, and Overlapping Roles	22
HAlign 3: Fast Multiple Alignment of Ultra-Large Numbers of Similar DNA/RNA Sequences	22
Deciphering the Role of Rapidly Evolving Conserved Elements in Primate Brain Development and Exploring Their Potential Involvement in Alzheimer's Disease	22
The Neurodevelopmental Gene MSANTD2 Belongs to a Gene Family Formed by Recurrent Molecular Domestication of Harbinger Transposons at the Base of Vertebrates	22
Correction to: Micro-RNA Clusters Integrate Evolutionary Constraints on Expression and Target Affinities: The miR-6/5/4/286/3/309 Cluster in Drosophila	22
Genetic Drift Shapes the Evolution of a Highly Dynamic Metapopulation	22
Reused Protein Segments Linked to Functional Dynamics	22

Large-Scale Chromosomal Changes Lead to Genome-Level Expression Alterations, Environmental Adaptation, and Speciation in the Gayal (Bos frontalis)	22
Diversity and Evolution of Frog Visual Opsins: Spectral Tuning and Adaptation to Distinct Light Environments	21
Gene Regulatory Networks of Epidermal and Neural Fate Choice in a Chordate	21
Convergent Molecular Evolution Associated With Repeated Transitions to Gregarious Larval Behavior in Heliconiini	21
A Deep-Learning Approach for Inference of Selective Sweeps from the Ancestral Recombination Graph	21
Patterns of Fitness and Gene Expression Epistasis Generated by Beneficial Mutations in the rho and rpoB Genes of Escherichia coli during High-Temperature Adaptation	21
GnT Motifs Can Increase T:A→G:C Mutation Rates Over 1000-fold in Bacteria	21
Canalization of the Polygenic Risk for Common Diseases and Traits in the UK Biobank Cohort	21
Contrasting Patterns of Single Nucleotide Polymorphisms and Structural Variation Across Multiple Invasions	21
Synergism, Bifunctionality, and the Evolution of a Gradual Sensory Trade-off in Hummingbird Taste Receptors	21
Genomic Shifts, Phenotypic Clines, and Fitness Costs Associated With Cold Tolerance in the Asian Tiger Mosquito	21
The Narrow Footprint of Ancient Balancing Selection Revealed by Heterokaryon Incompatibility Genes in Aspergillus fumigatus	21
Robustness of Ancestral Sequence Reconstruction to Among-site and Among-lineage Evolutionary Heterogeneity	21
Consequences of Substitution Model Selection on Protein Ancestral Sequence Reconstruction	21
Sequence Divergence and Retrotransposon Insertion Underlie Interspecific Epigenetic Differences in Primates	21
Signatures of Adaptation and Purifying Selection in Highland Populations of Dasiphora fruticosa	20
Changes in Ploidy Drive Reproduction Transition and Genomic Diversity in a Polyploid Fish Complex	20
The High Mutational Sensitivity of ccdA Antitoxin Is Linked to Codon Optimality	20
Evolution of large polymorphic inversions in a panmictic songbird	20
TF-High-Evolutionary: In Vivo Mutagenesis of Gene Regulatory Networks for the Study of the Genetics and Evolution of the Drosophila Regulatory Genome	20
Premetazoan Origin of Neuropeptide Signaling	20
Comparative Genomics Reveals Insights into the Divergent Evolution of Astigmatic Mites and Household Pest Adaptations	20
Horizontally Acquired Cellulases Assist the Expansion of Dietary Range inPristionchusNematodes	20
Road to Extinction? Past and Present Population Structure and Genomic Diversity in the Koala	20
Genomic Insights into Adaptation to Karst Limestone and Incipient Speciation in East Asian Platycarya spp. (Juglandaceae)	20
Evolutionary and Functional Analysis of Caspase-8 and ASC Interactions to Drive Lytic Cell Death, PANoptosis	20
Fixed Allele Differences Associated With the Centromere Reveal Chromosome Morphology and Rearrangements in a Reptile (Varanus acanthurus BOULENGER)	20
DIVERGE v4: a platform for large-scale analysis of functional divergence across multi-gene families	20
Exploring Large Protein Sequence Space through Homology- and Representation-based Hierarchical Clustering	20
Genetic Connections and Convergent Evolution of Tropical Indigenous Peoples in Asia	20
Inferring Long-Term and Short-Term Determinants of Genetic Diversity in Honey Bees: Beekeeping Impact and Conservation Strategies	19
Accurate, Scalable Structural Variant Genotyping in Complex Genomes at Population Scales	19
Bioinformatics Analysis of Mutations Sheds Light on the Evolution of Dengue NS1 Protein With Implications in the Identification of Potential Functional and Druggable Sites	19
Genomic Evidence for the Nonpathogenic State in HIV-1–Infected Northern Pig-Tailed Macaques	19
Nonhypermutator Cancers Access Driver Mutations Through Reversals in Germline Mutational Bias	19
Prediction of Antibiotic Resistance Evolution by Growth Measurement of All Proximal Mutants of Beta-Lactamase	19
Extensive Recombination Suppression and Genetic Degeneration of a Young ZW Sex Chromosome System in Halfbeak Fish	19
Parallel Evolution of Ameloblastic scpp Genes in Bony and Cartilaginous Vertebrates	19
Copy Number Variation Shapes Structural Genomic Diversity Associated With Ecological Adaptation in the Wild Tomato Solanum chilense	19
Tensor Decomposition-based Feature Extraction and Classification to Detect Natural Selection from Genomic Data	19
Five-leaf Generalizations of the D-statistic Reveal the Directionality of Admixture	19
Computationally Efficient Demographic History Inference from Allele Frequencies with Supervised Machine Learning	19
Saltational Episodes of Reticulate Evolution in the Drosophila saltans Species Group	19
Redistribution of Ancestral Functions Underlies the Evolution of Venom Production in Marine Predatory Snails	19
The Heterogeneity in the Landscape of Gene Dominance in Maize is Accompanied by Unique Chromatin Environments	19
Interactomics: Dozens of Viruses, Co-evolving With Humans, Including the Influenza A Virus, may Actively Distort Human Aging	19
Insufficient Evidence for a Severe Bottleneck in Humans During the Early to Middle Pleistocene Transition	19
Dynamics of Deleterious Mutations and Purifying Selection in Small Population Isolates	19
Not Quite Lost in Translation: Mistranslation Alters Adaptive Landscape Topography and the Dynamics of Evolution	19
Wiring Between Close Nodes in Molecular Networks Evolves More Quickly Than Between Distant Nodes	19
The Evolution of Transglutaminases Underlies the Origin and Loss of Cornified Skin Appendages in Vertebrates	19
Sex-Specific Dominance of Gene Expression in Seed Beetles	19
Kingdom-Wide Analysis of Fungal Protein-Coding and tRNA Genes Reveals Conserved Patterns of Adaptive Evolution	19
Reference-Free Variant Calling with Local Graph Construction with ska lo (SKA)	19
The Codon Statistics Database: A Database of Codon Usage Bias	19
Interlocus Gene Conversion, Natural Selection, and Paralog Homogenization	18
40th Anniversary Virtual Issues: Genomic Innovations in Extremophiles	18
Mitonuclear Sex Determination? Empirical Evidence from Bivalves	18
Deleterious Mutations and the Rare Allele Burden on Rice Gene Expression	18
Comprehensive annotation of olfactory and gustatory receptor genes and transposable elements revealed their evolutionary dynamics in aphids	18
Adaptive Capacity of a DNA Polymerase Clamp-loader ATPase Complex	18
Developmental Selection and the Perception of Mutation Bias	18
Fortieth Anniversary Virtual Issues: Microbial Diversity and the Tree of Life	18
DegronMD: Leveraging Evolutionary and Structural Features for Deciphering Protein-Targeted Degradation, Mutations, and Drug Response to Degrons	18
Convergent Adaptation of Ootheca Formation as a Reproductive Strategy in Polyneoptera	17
Rewinding the Ratchet: Rare Recombination Locally Rescues Neo-W Degeneration and Generates Plateaus of Sex-Chromosome Divergence	17
Earliest Photic Zone Niches Probed by Ancestral Microbial Rhodopsins	17
Speciation Underpinned by Unexpected Molecular Diversity in the Mycorrhizal Fungal GenusPisolithus	17
Insights into RAG Evolution from the Identification of “Missing Link” Family A RAGL Transposons	17
Independent Evolution of Sex Chromosomes and Male Pregnancy–Related Genes in Two Seahorse Species	17
Spatiotemporal Tracking of Three Novel Transposable Element Invasions in Drosophila melanogaster over the Last 30 Years	17
Divergence of Leptin Receptor and Interleukin-6 Receptor Subunit b in Early Vertebrate Evolution and Physiological Insights from the Sea Lamprey	17
The Emergence of SARS-CoV-2 Variants of Concern Is Driven by Acceleration of the Substitution Rate	17
A Balanced Inversion Polymorphism Exhibits a Dominance Reversal at the Gene Expression Level that Depends on Developmental Context	17
Lifestyle Transitions in Fusarioid Fungi are Frequent and Lack Clear Genomic Signatures	17
Dynamics of Gene Loss following Ancient Whole-Genome Duplication in the CrypticParameciumComplex	17
PhyloAcc-GT: A Bayesian Method for Inferring Patterns of Substitution Rate Shifts on Targeted Lineages Accounting for Gene Tree Discordance	17
Biases in ARG-Based Inference of Historical Population Size in Populations Experiencing Selection	17
General Theory of Specific Binding: Insights from a Genetic-Mechano-Chemical Protein Model	17
A High-Quality Blue Whale Genome, Segmental Duplications, and Historical Demography	17
Paleozoic Protein Fossils Illuminate the Evolution of Vertebrate Genomes and Transposable Elements	17
Evolutionary Genomics Unravels the Responses and Adaptation to Climate Change in a Key Alpine Forest Tree Species	16
Correction to: Deleterious and Adaptive Mutations in Plant Germplasm Conserved Ex Situ	16
Reconstruction of Plastid Proteomes of Apicomplexans and Close Relatives Reveals the Major Evolutionary Outcomes of Cryptic Plastids	16
The Elephant Evolved p53 Isoforms that Escape MDM2-Mediated Repression and Cancer	16
Rapid Divergence of Visual Systems and Signaling Traits to Contrasting Light Regimes During Early Speciation of African Crater Lake Cichlid Fish	16
Phenotypic and Genotypic Adaptation of Escherichia coli to Thermal Stress is Contingent on Genetic Background	16
Intermolecular Interactions Drive Protein Adaptive and Coadaptive Evolution at Both Species and Population Levels	16
Expression Divergence in Response to Sex-biased Selection	16
Citrullination Was Introduced into Animals by Horizontal Gene Transfer from Cyanobacteria	16
Sea Anemone Membrane Attack Complex/Perforin Superfamily Demonstrates an Evolutionary Transitional State between Venomous and Developmental Functions	16
The Heterogametic Transition in European Bufo Toads Switches the Sex Linkage of Key Vertebrate Sex Determination Genes and Associates with a Large Sex Chromosome Effect	16
Evolutionary Dynamics of Accelerated Antiviral Resistance Development in Hypermutator Herpesvirus	16
Widespread variation in EDNRB2 is associated with diverse melanin loss phenotypes across avian species	16
Adaptation in Unstable Environments and Global Gene Losses: Small but Stable Gene Networks by the May–Wigner Theory	16