Molecular Biology and Evolution

Article	Citations
PHACE: Phylogeny-Aware Detection of Molecular Coevolution	905
Genome-wide Parallelism Underlies Rapid Freshwater Adaptation Fueled by Standing Genetic Variation in a Wild Fish	182
Papua New Guinean Genomes Reveal the Complex Settlement of North Sahul	125
Functional Divergence in a Multi-gene Family Is a Key Evolutionary Innovation for Anaerobic Growth in Saccharomyces cerevisiae	118
Elevated HIV Viral Load is Associated with Higher Recombination Rate In Vivo	104
An Ancestral Major Histocompatibility Complex Organization in Cartilaginous Fish: Reconstructing MHC Origin and Evolution	100
Rewiring the Sex-Determination Pathway During the Evolution of Self-Fertility	96
The Interplay Between Developmental Stage and Environment Underlies the Adaptive Effect of a Natural Transposable Element Insertion	91
Adaptation of Antarctic Icefish Vision to Extreme Environments	87
Terrestrial Birth and Body Size Tune UCP1 Functionality in Seals	86
UPrimer: A Clade-Specific Primer Design Program Based on Nested-PCR Strategy and Its Applications in Amplicon Capture Phylogenomics	83
The Scorpionfly (Panorpa cognata) Genome Highlights Conserved and Derived Features of the Peculiar Dipteran X Chromosome	82
Brief Communication: The Predictable Network Topology of Evolutionary Genomic Constraint	78
Redefining the Limits of Functional Continuity in the Early Evolution of P-Loop NTPases	75
Inference of Coalescence Times and Variant Ages Using Convolutional Neural Networks	74
Prevalent Introgression Underlies Convergent Evolution in the Diversification ofPungitiusSticklebacks	74
Highlight: Unmasking the Supergene Beneath the Ruff's Mating Strategies	68
Inference of Gene Flow between Species under Misspecified Models	64
Correction to: Complex Evolutionary History With Extensive Ancestral Gene Flow in an African Primate Radiation	64
A General Substitution Matrix for Structural Phylogenetics	63
Evolutionary Processes in the Emergence and Recent Spread of the Syphilis Agent,Treponema pallidum	62
The Human Developing Cerebral Cortex Is Characterized by an Elevated De Novo Expression of Long Noncoding RNAs in Excitatory Neurons	61
Bidirectional Movement of Emerging H5N8 Avian Influenza Viruses Between Europe and Asia via Migratory Birds Since Early 2020	60
Odd-Paired is Involved in Morphological Divergence of Snail-Feeding Beetles	60
Evolution of Spatial and Temporalcis-Regulatory Divergence in Sticklebacks	60

FishmiRNA: An Evolutionarily Supported MicroRNA Annotation and Expression Database for Ray-Finned Fishes	56
Selection Can Favor a Recombination Landscape That Limits Polygenic Adaptation	51
HaploSweep: Detecting and Distinguishing Recent Soft and Hard Selective Sweeps through Haplotype Structure	50
Disentangling Signatures of Selection Before and After European Colonization in Latin Americans	50
Chromatin Accessibility and Gene Expression Vary Between a New and Evolved Autopolyploid of Arabidopsis arenosa	50
Unequally Abundant Chromosomes and Unusual Collections of Transferred Sequences Characterize Mitochondrial Genomes of Gastrodia (Orchidaceae), One of the Largest Mycoheterotrophic Plant Genera	48
Genetic Differentiation is Constrained to Chromosomal Inversions and Putative Centromeres in Locally Adapted Populations With Higher Gene Flow	48
Transposable Element Diversity and Activity Patterns in Neotropical Salamanders	47
Whole-genome Comparisons Identify Repeated Regulatory Changes Underlying Convergent Appendage Evolution in Diverse Fish Lineages	46
A Small Change With a Twist Ending: A Single Residue in EGF-CFC Drives Bilaterian Asymmetry	45
Inference of Infectious Disease Transmission through a Relaxed Bottleneck Using Multiple Genomes Per Host	45
Germ Granule Evolution Provides Mechanistic Insight into Drosophila Germline Development	45
New Phylogenetic Models Incorporating Interval-Specific Dispersal Dynamics Improve Inference of Disease Spread	45
Polishing De Novo Nanopore Assemblies of Bacteria and Eukaryotes With FMLRC2	44
Evolution of Brain-Expressed Biogenic Amine Receptors into Olfactory Trace Amine-Associated Receptors	43
Phylogeography Reveals Association between Swine Trade and the Spread of Porcine Epidemic Diarrhea Virus in China and across the World	43
Weighting by Gene Tree Uncertainty Improves Accuracy of Quartet-based Species Trees	43
Multilevel Gene Expression Changes in Lineages Containing Adaptive Copy Number Variants	42
Degeneration of the Olfactory System in a Murid Rodent that Evolved Diurnalism	39
Gene-by-environment Interactions and Adaptive Body Size Variation in Mice From the Americas	39
The Demographic History of Populations and Genomic Imprinting have Shaped the Transposon Patterns in Arabidopsis lyrata	39
Functional Divergence of thebag-of-marblesGene in theDrosophila melanogasterSpecies Group	38
Convergent Evolution of Cysteine-Rich Keratins in Horny Teeth of Jawless Vertebrates and in Cornified Skin Appendages of Amniotes	38
Functional Prokaryotic-Like Deoxycytidine Triphosphate Deaminases and Thymidylate Synthase in Eukaryotic Social Amoebae: Vertical, Endosymbiotic, or Horizontal Gene Transfer?	38
Comprehensive Genomic Analysis Reveals Novel Transposable Element-Derived MicroRNA Regulating Caste Differentiation in Honeybees	38
Tracing the Origin and Evolutionary Fate of Recent Gene Retrocopies in Natural Populations of the House Mouse	37
On the Decoupling of Evolutionary Changes in mRNA and Protein Levels	37
Genetic Incompatibilities and Evolutionary Rescue by Wild Relatives Shaped Grain Amaranth Domestication	37
Duplication and Losses of Opsin Genes in Lophotrochozoan Evolution	37
Evolutionary Process Underlying Receptor Gene Expansion and Cellular Divergence of Olfactory Sensory Neurons in Honeybees	36
Ecological Diversification in an Adaptive Radiation of Plants: The Role of De Novo Mutation and Introgression	35
Phylotranscriptomics Resolves the Phylogeny of Pooideae and Uncovers Factors for Their Adaptive Evolution	35
fastDFE: Fast and Flexible Inference of the Distribution of Fitness Effects	35
Ecological Speciation Promoted by Divergent Regulation of Functional Genes Within African Cichlid Fishes	35
Episodes of Diversification and Isolation in Island Southeast Asian and Near Oceanian Male Lineages	35
GroEL/S Overexpression Helps to Purge Deleterious Mutations and Reduce Genetic Diversity during Adaptive Protein Evolution	34
The Rich Evolutionary History of the Reactive Oxygen Species Metabolic Arsenal Shapes Its Mechanistic Plasticity at the Onset of Metazoan Regeneration	34
Cytoplasmic Polyadenylation Is an Ancestral Hallmark of Early Development in Animals	34
De Novo Assembly of 20 Chicken Genomes Reveals the Undetectable Phenomenon for Thousands of Core Genes on Microchromosomes and Subtelomeric Regions	34
Controls for Phylogeny and Robust Analysis in Pareto Task Inference	33
Correction to: The Impact of Genetic Surfing on Neutral Genomic Diversity	33
Deleterious Mutations Accumulate Faster in Allopolyploid Than Diploid Cotton (Gossypium) and Unequally between Subgenomes	33
A2B-COVID: A Tool for Rapidly Evaluating Potential SARS-CoV-2 Transmission Events	32
Most m5C Modifications in Mammalian mRNAs are Nonadaptive	31
MEGA12: Molecular Evolutionary Genetic Analysis Version 12 for Adaptive and Green Computing	31
TimeTree 5: An Expanded Resource for Species Divergence Times	31
Genetic Variation in Reproductive Investment Across an Ephemerality Gradient inDaphnia pulex	31
ASTER: A Package for Large-scale Phylogenomic Reconstructions	31
Phosphate Limitation Responses in Marine Green Algae Are Linked to Reprogramming of the tRNA Epitranscriptome and Codon Usage Bias	31
Host-Associated Genetic Differentiation in the Face of Ongoing Gene Flow: Ecological Speciation in a Pathogenic Parasite of Freshwater Fish	31

Recurrent Duplication and Diversification of a Vital DNA Repair Gene Family Across Drosophila	30
A Quantitative Theory for Genomic Offset Statistics	30
Divergent Cardiovascular Adaptations and Gene Regulation in High-Elevation Natives and Recent Colonizers of the Qinghai-Tibetan Plateau	30
Similarity-Based Analysis of Allele Frequency Distribution among Multiple Populations Identifies Adaptive Genomic Structural Variants	30
ShiNyP: Unlocking SNP-Based Population Genetics—AI-Assisted Platform for Rapid and Interactive Visual Exploration	30
Quantifying the Evolutionary Dynamics of Structure and Content in Closely Related E. coli Genomes	29
Adaptive Evolution of Nearctic Deepwater Fish Vision: Implications for Assessing Functional Variation for Conservation	29
Accounting for Errors in Data Improves Divergence Time Estimates in Single-cell Cancer Evolution	29
PlantFUNCO: Integrative Functional Genomics Database Reveals Clues into Duplicates Divergence Evolution	29
The Number and Pattern of Viral Genomic Reassortments are not Necessarily Identifiable from Segment Trees	29
MicroRNAs as Indicators into the Causes and Consequences of Whole-Genome Duplication Events	29
Genomic Variation, Population History, and Long-Term Genetic Adaptation to High Altitudes in Tibetan Partridge (Perdix hodgsoniae)	29
Quantifying the Evolution of SNPs That Affect RNA Secondary Structure in Arabidopsis thaliana Genes	28
Toxin-Antitoxin Systems Reflect Community Interactions Through Horizontal Gene Transfer	28
Using all Gene Families Vastly Expands Data Available for Phylogenomic Inference	28
Inference of the Demographic Histories and Selective Effects of Human Gut Commensal Microbiota Over the Course of Human History	28
Transcriptome-based Phylogeny of the Semi-aquatic Bugs (Hemiptera: Heteroptera: Gerromorpha) Reveals Patterns of Lineage Expansion in a Series of New Adaptive Zones	28
The Genomic Basis of Evolutionary Novelties in a Leafhopper	27
Dating Ammonia-Oxidizing Bacteria with Abundant Eukaryotic Fossils	27
Multiple Origins and Genomic Basis of Complex Traits in Sighthounds	27
A Million Years of Mammoth Mitogenome Evolution	27
Earl Grey: A Fully Automated User-Friendly Transposable Element Annotation and Analysis Pipeline	27
Sympatric Recombination in Zoonotic Cryptosporidium Leads to Emergence of Populations with Modified Host Preference	27
Persistent, Private, and Mobile Genes: A Model for Gene Dynamics in Evolving Pangenomes	27
Antimutator and mutational spectrum effects can combine to reduce evolutionary potential in Escherichia coli ΔnudJ	27
Rapid Gene Evolution in an Ancient Post-transcriptional and Translational Regulatory System Compensates for Meiotic X Chromosomal Inactivation	26
Between but Not Within-Species Variation in the Distribution of Fitness Effects	26
Duplication and Specialization of NUDX1 in Rosaceae Led to Geraniol Production in Rose Petals	26
Cold-Driven Hemoglobin Evolution in Antarctic Notothenioid Fishes Prior to Hemoglobin Gene Loss in White-Blooded Icefishes	26
The Population History of Domestic Sheep Revealed by Paleogenomes	26
Conservation of the Restricted Expression of Brassicaceae Bsister-Like Genes in Seeds Requires a Transposable Element in Arabidopsis thaliana	26
Shrinkage-based Random Local Clocks with Scalable Inference	25
Phenotype Bias Determines How Natural RNA Structures Occupy the Morphospace of All Possible Shapes	25
Low Spontaneous Mutation Rate in Complex Multicellular Eukaryotes with a Haploid–Diploid Life Cycle	25
The Convergent Evolution of Hummingbird Pollination Results in Repeated Floral Scent Loss Through Gene Downregulation	25
HaploBlocks: Efficient Detection of Positive Selection in Large Population Genomic Datasets	24
The Genomic Landscapes of Desert Birds Form over Multiple Time Scales	24
Analysis of Evolutionary Conservation, Expression Level, and Genetic Association at a Genome-wide Scale Reveals Heterogeneity Across Polygenic Phenotypes	24
Loss of Timeless Underlies an Evolutionary Transition within the Circadian Clock	24
Climate Warming Since the Holocene Accelerates West–East Communication for the Eurasian Temperate Water Strider SpeciesAquarius paludum	24
Functional Characterization of Luciferase in a Brittle Star Indicates Parallel Evolution Influenced by Genomic Availability of Haloalkane Dehalogenase	24
Y-Linked Copy Number Polymorphism of Target of Rapamycin Is Associated with Sexual Size Dimorphism in Seed Beetles	24
Histone H3K27 Methylation Perturbs Transcriptional Robustness and Underpins Dispensability of Highly Conserved Genes in Fungi	24
Genetic and Anatomical Determinants of Olfaction in Dogs and Wild Canids	24
Challenging the Importance of Plastid Genome Structure Conservation: New Insights From Euglenophytes	24
Multiple Sources of Uncertainty Confound Inference of Historical Human Generation Times	24
Hydrophobicity-Driven Increases in Editing in Mitochondrial mRNAs during the Evolution of Kinetoplastids	24
Single-cell and Spatial Transcriptomics Illuminate Bat Immunity and Barrier Tissue Evolution	23
A Thermodynamic Atlas of Proteomes Reveals Energetic Innovation across the Tree of Life	23
Reused Protein Segments Linked to Functional Dynamics	23
Adaptation and Cryptic Pseudogenization in Penguin Toll-Like Receptors	23
An Alternative Self-Splicing Intron Lifecycle Revealed by Dynamic Intron Turnover in Epichloë Endophyte Mitochondrial Genomes	23
Convergent molecular evolution associated with repeated transitions to gregarious larval behaviour in Heliconiini	23
Genetic Diversity, Heteroplasmy, and Recombination in Mitochondrial Genomes ofDaphnia pulex,Daphnia pulicaria, andDaphnia obtusa	23
Whole-Genome Resequencing of Worldwide Wild and Domestic Sheep Elucidates Genetic Diversity, Introgression, and Agronomically Important Loci	23
The Carbon Footprint of Bioinformatics	23
Patterns of Fitness and Gene Expression Epistasis Generated by Beneficial Mutations in the rho and rpoB Genes of Escherichia coli during High-Temperature Adaptation	23
A Near-Deterministic Mutational Hotspot in Pseudomonas fluorescens Is Constructed by Multiple Interacting Genomic Features	23
Decoding the Fundamental Drivers of Phylodynamic Inference	22
HAlign 3: Fast Multiple Alignment of Ultra-Large Numbers of Similar DNA/RNA Sequences	22
Diversity and Evolution of Frog Visual Opsins: Spectral Tuning and Adaptation to Distinct Light Environments	22
Consequences of Substitution Model Selection on Protein Ancestral Sequence Reconstruction	22
Sequence Divergence and Retrotransposon Insertion Underlie Interspecific Epigenetic Differences in Primates	22
The Neurodevelopmental Gene MSANTD2 Belongs to a Gene Family Formed by Recurrent Molecular Domestication of Harbinger Transposons at the Base of Vertebrates	22
Gene Regulatory Networks of Epidermal and Neural Fate Choice in a Chordate	22
Robustness of Ancestral Sequence Reconstruction to Among-site and Among-lineage Evolutionary Heterogeneity	21
Genetic Drift Shapes the Evolution of a Highly Dynamic Metapopulation	21
The Narrow Footprint of Ancient Balancing Selection Revealed by Heterokaryon Incompatibility Genes in Aspergillus fumigatus	21
Measuring the Efficiency of Purging by non-random Mating in Human Populations	21
Contrasting Patterns of Single Nucleotide Polymorphisms and Structural Variation Across Multiple Invasions	21
Deciphering the Role of Rapidly Evolving Conserved Elements in Primate Brain Development and Exploring Their Potential Involvement in Alzheimer's Disease	21
Large-Scale Chromosomal Changes Lead to Genome-Level Expression Alterations, Environmental Adaptation, and Speciation in the Gayal (Bos frontalis)	21
Premetazoan Origin of Neuropeptide Signaling	21
A Deep-Learning Approach for Inference of Selective Sweeps from the Ancestral Recombination Graph	20
Evolutionary Shortcuts via Multinucleotide Substitutions and Their Impact on Natural Selection Analyses	20
Synergism, Bifunctionality, and the Evolution of a Gradual Sensory Trade-off in Hummingbird Taste Receptors	20
Computationally Efficient Demographic History Inference from Allele Frequencies with Supervised Machine Learning	20
Evolutionary and Functional Analysis of Caspase-8 and ASC Interactions to Drive Lytic Cell Death, PANoptosis	20
Putative Signals of Generalist Plant Species Adaptation to Local Pollinator Communities and Abiotic Factors	20
Erratum to: Adaptive Introgression Facilitates Adaptation to High Latitudes in European Aspen (Populus Tremula L.)	20

PRD-Class Homeobox Genes in Bovine Early Embryos: Function, Evolution, and Overlapping Roles	20
Canalization of the Polygenic Risk for Common Diseases and Traits in the UK Biobank Cohort	20
Signatures of Adaptation and Purifying Selection in Highland Populations of Dasiphora fruticosa	20
Genetic Connections and Convergent Evolution of Tropical Indigenous Peoples in Asia	20
Correction to: Micro-RNA Clusters Integrate Evolutionary Constraints on Expression and Target Affinities: The miR-6/5/4/286/3/309 Cluster in Drosophila	20
Uncovering the Genomic Basis of Infection Through Co-genomic Sequencing of Hosts and Parasites	20
Genomic Shifts, Phenotypic Clines, and Fitness Costs Associated With Cold Tolerance in the Asian Tiger Mosquito	20
Phylogenetic Articulation of Uric Acid Evolution in Mammals and How It Informs a Therapeutic Uricase	20
Nonhypermutator Cancers Access Driver Mutations Through Reversals in Germline Mutational Bias	20
The Evolution of Transglutaminases Underlies the Origin and Loss of Cornified Skin Appendages in Vertebrates	20
Sex-Specific Dominance of Gene Expression in Seed Beetles	19
The Heterogeneity in the Landscape of Gene Dominance in Maize is Accompanied by Unique Chromatin Environments	19
Horizontally Acquired Cellulases Assist the Expansion of Dietary Range inPristionchusNematodes	19
Exploring Large Protein Sequence Space through Homology- and Representation-based Hierarchical Clustering	19
Prediction of Antibiotic Resistance Evolution by Growth Measurement of All Proximal Mutants of Beta-Lactamase	19
Road to Extinction? Past and Present Population Structure and Genomic Diversity in the Koala	19
Five-leaf Generalizations of the D-statistic Reveal the Directionality of Admixture	19
Redistribution of Ancestral Functions Underlies the Evolution of Venom Production in Marine Predatory Snails	19
Interactomics: Dozens of Viruses, Co-evolving With Humans, Including the Influenza A Virus, may Actively Distort Human Aging	19
Parallel Evolution of Ameloblastic scpp Genes in Bony and Cartilaginous Vertebrates	19
Bioinformatics Analysis of Mutations Sheds Light on the Evolution of Dengue NS1 Protein With Implications in the Identification of Potential Functional and Druggable Sites	19
Changes in Ploidy Drive Reproduction Transition and Genomic Diversity in a Polyploid Fish Complex	19
40th Anniversary Virtual Issues: Genomic Innovations in Extremophiles	18
Wiring Between Close Nodes in Molecular Networks Evolves More Quickly Than Between Distant Nodes	18
Interlocus Gene Conversion, Natural Selection, and Paralog Homogenization	18
Not Quite Lost in Translation: Mistranslation Alters Adaptive Landscape Topography and the Dynamics of Evolution	18
Genomic Insights into Adaptation to Karst Limestone and Incipient Speciation in East Asian Platycarya spp. (Juglandaceae)	18
Reference-Free Variant Calling with Local Graph Construction with ska lo (SKA)	18
The Codon Statistics Database: A Database of Codon Usage Bias	18
DegronMD: Leveraging Evolutionary and Structural Features for Deciphering Protein-Targeted Degradation, Mutations, and Drug Response to Degrons	18
Dynamics of Gene Loss following Ancient Whole-Genome Duplication in the CrypticParameciumComplex	18
Comparative Genomics Reveals Insights into the Divergent Evolution of Astigmatic Mites and Household Pest Adaptations	18
Saltational Episodes of Reticulate Evolution in the Drosophila saltans Species Group	18
TF-High-Evolutionary: In Vivo Mutagenesis of Gene Regulatory Networks for the Study of the Genetics and Evolution of the Drosophila Regulatory Genome	18
Tensor Decomposition-based Feature Extraction and Classification to Detect Natural Selection from Genomic Data	18
The High Mutational Sensitivity of ccdA Antitoxin Is Linked to Codon Optimality	18
General Theory of Specific Binding: Insights from a Genetic-Mechano-Chemical Protein Model	18
Dynamics of Deleterious Mutations and Purifying Selection in Small Population Isolates	18
Genomic Evidence for the Nonpathogenic State in HIV-1–Infected Northern Pig-Tailed Macaques	18
Aging at Evolutionary Crossroads: Longitudinal Gene Co-expression Network Analyses of Proximal and Ultimate Causes of Aging in Bats	18
Kingdom-Wide Analysis of Fungal Protein-Coding and tRNA Genes Reveals Conserved Patterns of Adaptive Evolution	18
Fixed Allele Differences Associated With the Centromere Reveal Chromosome Morphology and Rearrangements in a Reptile (Varanus acanthurus BOULENGER)	18
Extensive Recombination Suppression and Genetic Degeneration of a Young ZW Sex Chromosome System in Halfbeak Fish	17
Fortieth Anniversary Virtual Issues: Microbial Diversity and the Tree of Life	17
Lifestyle Transitions in Fusarioid Fungi are Frequent and Lack Clear Genomic Signatures	17
Convergent Adaptation of Ootheca Formation as a Reproductive Strategy in Polyneoptera	17
Developmental Selection and the Perception of Mutation Bias	17
Adaptive Capacity of a DNA Polymerase Clamp-loader ATPase Complex	17
Rewinding the Ratchet: Rare Recombination Locally Rescues Neo-W Degeneration and Generates Plateaus of Sex-Chromosome Divergence	17
A High-Quality Blue Whale Genome, Segmental Duplications, and Historical Demography	17
Dietary, Cultural, and Pathogens-Related Selective Pressures Shaped Differential Adaptive Evolution among Native Mexican Populations	17
Insights into RAG Evolution from the Identification of “Missing Link” Family A RAGL Transposons	17
PhyloAcc-GT: A Bayesian Method for Inferring Patterns of Substitution Rate Shifts on Targeted Lineages Accounting for Gene Tree Discordance	17
Divergence of Leptin Receptor and Interleukin-6 Receptor Subunit b in Early Vertebrate Evolution and Physiological Insights from the Sea Lamprey	17
The Elephant Evolved p53 Isoforms that Escape MDM2-Mediated Repression and Cancer	16
Paleozoic Protein Fossils Illuminate the Evolution of Vertebrate Genomes and Transposable Elements	16
Evolutionary Genomics Unravels the Responses and Adaptation to Climate Change in a Key Alpine Forest Tree Species	16
Biases in ARG-Based Inference of Historical Population Size in Populations Experiencing Selection	16
Insufficient Evidence for a Severe Bottleneck in Humans During the Early to Middle Pleistocene Transition	16
Independent Evolution of Sex Chromosomes and Male Pregnancy–Related Genes in Two Seahorse Species	16
Expression Divergence in Response to Sex-biased Selection	16
Adaptation in Unstable Environments and Global Gene Losses: Small but Stable Gene Networks by the May–Wigner Theory	16
Giant Starship Elements Mobilize Accessory Genes in Fungal Genomes	16
Conservation Evolutionary Biology: A Unified Framework Connecting the Past, Present, and Future of Biodiversity Conservation	16
Genomics of Secondarily Temperate Adaptation in the Only Non-Antarctic Icefish	16
Inferring Long-Term and Short-Term Determinants of Genetic Diversity in Honey Bees: Beekeeping Impact and Conservation Strategies	16
Spatiotemporal Tracking of Three Novel Transposable Element Invasions in Drosophila melanogaster over the Last 30 Years	16
Accurate, scalable structural variant genotyping in complex genomes at population scales	16
Speciation Underpinned by Unexpected Molecular Diversity in the Mycorrhizal Fungal GenusPisolithus	16
A Comparative Assessment of Self-limiting Genetic Control Strategies for Population Suppression	16
Attribution of Cancer Origins to Endogenous, Exogenous, and Preventable Mutational Processes	16
Genetic and Structural Analysis of SARS-CoV-2 Spike Protein for Universal Epitope Selection	16
The Emergence of SARS-CoV-2 Variants of Concern Is Driven by Acceleration of the Substitution Rate	16
Deleterious Mutations and the Rare Allele Burden on Rice Gene Expression	16
Mitonuclear Sex Determination? Empirical Evidence from Bivalves	16
Earliest Photic Zone Niches Probed by Ancestral Microbial Rhodopsins	16
Population Genomics of Wall Lizards Reflects the Dynamic History of the Mediterranean Basin	16
The Expected Behaviors of Posterior Predictive Tests and Their Unexpected Interpretation	15
Slow Protein Dynamics Elicits New Enzymatic Functions by Means of Epistatic Interactions	15
Functional Optimization in Distinct Tissues and Conditions Constrains the Rate of Protein Evolution	15
Correction to: Deleterious and Adaptive Mutations in Plant Germplasm Conserved Ex Situ	15
Tree Sequences as a General-Purpose Tool for Population Genetic Inference	15
Predicting Phylogenetic Bootstrap Values via Machine Learning	15
A Genetic Bottleneck of Mitochondrial DNA During Human Lymphocyte Development	15
The Complex History of Genome Duplication and Hybridization in North American Gray Treefrogs	15
Genomic Signatures of Domestication in a Fungus Obligately Farmed by Leafcutter Ants	15
Phenotypic and Genotypic Adaptation of Escherichia coli to Thermal Stress is Contingent on Genetic Background	15
Deciphering Evolutionary Trajectories of Lactate Dehydrogenases Provides New Insights into Allostery	15
Sea Anemone Membrane Attack Complex/Perforin Superfamily Demonstrates an Evolutionary Transitional State between Venomous and Developmental Functions	15
Evolutionary Dynamics of Accelerated Antiviral Resistance Development in Hypermutator Herpesvirus	15
Comparative Population Transcriptomics Provide New Insight into the Evolutionary History and Adaptive Potential of World Ocean Krill	15
Reconstruction of Plastid Proteomes of Apicomplexans and Close Relatives Reveals the Major Evolutionary Outcomes of Cryptic Plastids	15
Citrullination Was Introduced into Animals by Horizontal Gene Transfer from Cyanobacteria	15
The Evolutionary History of Drosophila simulans Y Chromosomes Reveals Molecular Signatures of Resistance to Sex Ratio Meiotic Drive	15
Chance Favors the Prepared Genomes: Horizontal Transfer Shapes the Emergence of Antibiotic Resistance Mutations in Core Genes	15