Molecular Biology and Evolution

Article	Citations
Multilevel Gene Expression Changes in Lineages Containing Adaptive Copy Number Variants	995
PHACE: Phylogeny-Aware Detection of Molecular Coevolution	355
Genome-wide Parallelism Underlies Rapid Freshwater Adaptation Fueled by Standing Genetic Variation in a Wild Fish	141
Selection Can Favor a Recombination Landscape That Limits Polygenic Adaptation	133
Adaptation of Antarctic Icefish Vision to Extreme Environments	131
Bidirectional Movement of Emerging H5N8 Avian Influenza Viruses Between Europe and Asia via Migratory Birds Since Early 2020	110
Disentangling Signatures of Selection Before and After European Colonization in Latin Americans	101
A Small Change With a Twist Ending: A Single Residue in EGF-CFC Drives Bilaterian Asymmetry	99
Unequally Abundant Chromosomes and Unusual Collections of Transferred Sequences Characterize Mitochondrial Genomes of Gastrodia (Orchidaceae), One of the Largest Mycoheterotrophic Plant Genera	98
Brief Communication: The Predictable Network Topology of Evolutionary Genomic Constraint	93
Genetic Differentiation is Constrained to Chromosomal Inversions and Putative Centromeres in Locally Adapted Populations With Higher Gene Flow	91
Transposable Element Diversity and Activity Patterns in Neotropical Salamanders	86
Highlight: Unmasking the Supergene Beneath the Ruff's Mating Strategies	86
Terrestrial Birth and Body Size Tune UCP1 Functionality in Seals	86
Whole-genome Comparisons Identify Repeated Regulatory Changes Underlying Convergent Appendage Evolution in Diverse Fish Lineages	82
Correction to: Complex Evolutionary History With Extensive Ancestral Gene Flow in an African Primate Radiation	79
The Human Developing Cerebral Cortex Is Characterized by an Elevated De Novo Expression of Long Noncoding RNAs in Excitatory Neurons	70
Odd-Paired is Involved in Morphological Divergence of Snail-Feeding Beetles	67
Rewiring the Sex-Determination Pathway During the Evolution of Self-Fertility	67
HaploSweep: Detecting and Distinguishing Recent Soft and Hard Selective Sweeps through Haplotype Structure	65
New Phylogenetic Models Incorporating Interval-Specific Dispersal Dynamics Improve Inference of Disease Spread	65
Chromatin Accessibility and Gene Expression Vary Between a New and Evolved Autopolyploid of Arabidopsis arenosa	65
Inference of Coalescence Times and Variant Ages Using Convolutional Neural Networks	64
Functional Divergence in a Multi-gene Family Is a Key Evolutionary Innovation for Anaerobic Growth in Saccharomyces cerevisiae	64
UPrimer: A Clade-Specific Primer Design Program Based on Nested-PCR Strategy and Its Applications in Amplicon Capture Phylogenomics	61

The Scorpionfly (Panorpa cognata) Genome Highlights Conserved and Derived Features of the Peculiar Dipteran X Chromosome	60
Prevalent Introgression Underlies Convergent Evolution in the Diversification ofPungitiusSticklebacks	58
The Demographic History of Populations and Genomic Imprinting have Shaped the Transposon Patterns in Arabidopsis lyrata	57
Redefining the Limits of Functional Continuity in the Early Evolution of P-Loop NTPases	54
Elevated HIV Viral Load is Associated with Higher Recombination Rate In Vivo	54
Evolution of Spatial and Temporalcis-Regulatory Divergence in Sticklebacks	52
An Ancestral Major Histocompatibility Complex Organization in Cartilaginous Fish: Reconstructing MHC Origin and Evolution	51
Inference of Gene Flow between Species under Misspecified Models	51
FishmiRNA: An Evolutionarily Supported MicroRNA Annotation and Expression Database for Ray-Finned Fishes	49
Phylogeography Reveals Association between Swine Trade and the Spread of Porcine Epidemic Diarrhea Virus in China and across the World	48
Evolution of sex-biased gene expression during transitions to separate sexes in the Silene genus	48
Polishing De Novo Nanopore Assemblies of Bacteria and Eukaryotes With FMLRC2	47
A General Substitution Matrix for Structural Phylogenetics	47
Phylogenomic Analyses Reveal that Panguiarchaeum Is a Clade of Genome-Reduced Asgard Archaea Within the Njordarchaeia	46
How Did Evolution Halve Genome Size During an Oceanic Island Colonization?	45
The Interplay Between Developmental Stage and Environment Underlies the Adaptive Effect of a Natural Transposable Element Insertion	44
Inference of Infectious Disease Transmission through a Relaxed Bottleneck Using Multiple Genomes Per Host	44
Evolution of Brain-Expressed Biogenic Amine Receptors into Olfactory Trace Amine-Associated Receptors	43
De Novo Assembly of 20 Chicken Genomes Reveals the Undetectable Phenomenon for Thousands of Core Genes on Microchromosomes and Subtelomeric Regions	41
Weighting by Gene Tree Uncertainty Improves Accuracy of Quartet-based Species Trees	41
Evolutionary Process Underlying Receptor Gene Expansion and Cellular Divergence of Olfactory Sensory Neurons in Honeybees	41
Germ Granule Evolution Provides Mechanistic Insight into Drosophila Germline Development	41
Deleterious Mutations Accumulate Faster in Allopolyploid Than Diploid Cotton (Gossypium) and Unequally between Subgenomes	41
Evolutionary Processes in the Emergence and Recent Spread of the Syphilis Agent,Treponema pallidum	41
fastDFE: Fast and Flexible Inference of the Distribution of Fitness Effects	40
Genetic Variation in Reproductive Investment Across an Ephemerality Gradient inDaphnia pulex	39
Convergent Evolution of Cysteine-Rich Keratins in Horny Teeth of Jawless Vertebrates and in Cornified Skin Appendages of Amniotes	39
Degeneration of the Olfactory System in a Murid Rodent that Evolved Diurnalism	39
Functional Divergence of thebag-of-marblesGene in theDrosophila melanogasterSpecies Group	39
Gene-by-environment Interactions and Adaptive Body Size Variation in Mice From the Americas	39
Correction to: The Impact of Genetic Surfing on Neutral Genomic Diversity	38
The Rich Evolutionary History of the Reactive Oxygen Species Metabolic Arsenal Shapes Its Mechanistic Plasticity at the Onset of Metazoan Regeneration	38
Functional Prokaryotic-Like Deoxycytidine Triphosphate Deaminases and Thymidylate Synthase in Eukaryotic Social Amoebae: Vertical, Endosymbiotic, or Horizontal Gene Transfer?	38
Controls for Phylogeny and Robust Analysis in Pareto Task Inference	37
Most m5C Modifications in Mammalian mRNAs are Nonadaptive	36
Phosphate Limitation Responses in Marine Green Algae Are Linked to Reprogramming of the tRNA Epitranscriptome and Codon Usage Bias	36
On the Decoupling of Evolutionary Changes in mRNA and Protein Levels	36
Ecological Speciation Promoted by Divergent Regulation of Functional Genes Within African Cichlid Fishes	36
A2B-COVID: A Tool for Rapidly Evaluating Potential SARS-CoV-2 Transmission Events	36
Episodes of Diversification and Isolation in Island Southeast Asian and Near Oceanian Male Lineages	36
Influence of Gonadal and Chromosomal Sex on the Brain Transcriptome in a Mouse Species with Natural Sex Reversal	35
Duplication and Losses of Opsin Genes in Lophotrochozoan Evolution	35
SegMantX: a novel tool for detecting DNA duplications uncovers prevalent duplications in plasmids	35
Cytoplasmic Polyadenylation Is an Ancestral Hallmark of Early Development in Animals	34
Comprehensive Genomic Analysis Reveals Novel Transposable Element-Derived MicroRNA Regulating Caste Differentiation in Honeybees	34
GroEL/S Overexpression Helps to Purge Deleterious Mutations and Reduce Genetic Diversity during Adaptive Protein Evolution	34
Phylotranscriptomics Resolves the Phylogeny of Pooideae and Uncovers Factors for Their Adaptive Evolution	33
Genetic Incompatibilities and Evolutionary Rescue by Wild Relatives Shaped Grain Amaranth Domestication	33
Ecological Diversification in an Adaptive Radiation of Plants: The Role of De Novo Mutation and Introgression	33
Tracing the Origin and Evolutionary Fate of Recent Gene Retrocopies in Natural Populations of the House Mouse	32

MEGA12: Molecular Evolutionary Genetic Analysis Version 12 for Adaptive and Green Computing	31
TimeTree 5: An Expanded Resource for Species Divergence Times	31
Quantifying the Evolution of SNPs That Affect RNA Secondary Structure in Arabidopsis thaliana Genes	30
Divergent Cardiovascular Adaptations and Gene Regulation in High-Elevation Natives and Recent Colonizers of the Qinghai-Tibetan Plateau	30
ShiNyP: Unlocking SNP-Based Population Genetics—AI-Assisted Platform for Rapid and Interactive Visual Exploration	30
Persistent, Private, and Mobile Genes: A Model for Gene Dynamics in Evolving Pangenomes	30
Similarity-Based Analysis of Allele Frequency Distribution among Multiple Populations Identifies Adaptive Genomic Structural Variants	30
Quantifying the Evolutionary Dynamics of Structure and Content in Closely Related E. coli Genomes	30
Multiple Origins and Genomic Basis of Complex Traits in Sighthounds	30
Accounting for Errors in Data Improves Divergence Time Estimates in Single-cell Cancer Evolution	30
Adaptive Evolution of Nearctic Deepwater Fish Vision: Implications for Assessing Functional Variation for Conservation	29
Recurrent Duplication and Diversification of a Vital DNA Repair Gene Family Across Drosophila	29
The Number and Pattern of Viral Genomic Reassortments are not Necessarily Identifiable from Segment Trees	29
ASTER: A Package for Large-Scale Phylogenomic Reconstructions	29
MicroRNAs as Indicators into the Causes and Consequences of Whole-Genome Duplication Events	29
Using all Gene Families Vastly Expands Data Available for Phylogenomic Inference	29
Revealing Reassortment in Influenza A Viruses with TreeSort	28
Evolution of SL-RNA Genes and Their Splicing Targets in Parasitic Flatworms	28
Genomic Variation, Population History, and Long-Term Genetic Adaptation to High Altitudes in Tibetan Partridge (Perdix hodgsoniae)	28
Host-Associated Genetic Differentiation in the Face of Ongoing Gene Flow: Ecological Speciation in a Pathogenic Parasite of Freshwater Fish	28
Toxin-Antitoxin Systems Reflect Community Interactions Through Horizontal Gene Transfer	28
PlantFUNCO: Integrative Functional Genomics Database Reveals Clues into Duplicates Divergence Evolution	28
A Million Years of Mammoth Mitogenome Evolution	27
Transcriptome-based Phylogeny of the Semi-aquatic Bugs (Hemiptera: Heteroptera: Gerromorpha) Reveals Patterns of Lineage Expansion in a Series of New Adaptive Zones	27
The Genomic Basis of Evolutionary Novelties in a Leafhopper	27
Deciphering the impact of temperature on pleiotropic consequences of RNA polymerase mutations	27
Inference of the Demographic Histories and Selective Effects of Human Gut Commensal Microbiota Over the Course of Human History	27
A Quantitative Theory for Genomic Offset Statistics	27
Dating Ammonia-Oxidizing Bacteria with Abundant Eukaryotic Fossils	27
Sympatric Recombination in Zoonotic Cryptosporidium Leads to Emergence of Populations with Modified Host Preference	27
Introducing the Y-chromosomal Ancestral-like Reference Sequence—Improving the Capture of Human Evolutionary Information	26
HaploBlocks: Efficient Detection of Positive Selection in Large Population Genomic Datasets	26
The Genomic Landscapes of Desert Birds Form over Multiple Time Scales	26
Duplication and Specialization of NUDX1 in Rosaceae Led to Geraniol Production in Rose Petals	26
Low Spontaneous Mutation Rate in Complex Multicellular Eukaryotes with a Haploid–Diploid Life Cycle	26
Climate Warming Since the Holocene Accelerates West–East Communication for the Eurasian Temperate Water Strider SpeciesAquarius paludum	26
Shrinkage-based Random Local Clocks with Scalable Inference	26
Rapid Gene Evolution in an Ancient Post-transcriptional and Translational Regulatory System Compensates for Meiotic X Chromosomal Inactivation	26
Between but Not Within-Species Variation in the Distribution of Fitness Effects	26
Conservation of the Restricted Expression of Brassicaceae Bsister-Like Genes in Seeds Requires a Transposable Element in Arabidopsis thaliana	26
Genetic and Anatomical Determinants of Olfaction in Dogs and Wild Canids	26
Earl Grey: A Fully Automated User-Friendly Transposable Element Annotation and Analysis Pipeline	26
An Alternative Self-Splicing Intron Lifecycle Revealed by Dynamic Intron Turnover in Epichloë Endophyte Mitochondrial Genomes	25
Y-Linked Copy Number Polymorphism of Target of Rapamycin Is Associated with Sexual Size Dimorphism in Seed Beetles	25
Challenging the Importance of Plastid Genome Structure Conservation: New Insights From Euglenophytes	25
A Thermodynamic Atlas of Proteomes Reveals Energetic Innovation across the Tree of Life	25
Analysis of Evolutionary Conservation, Expression Level, and Genetic Association at a Genome-wide Scale Reveals Heterogeneity Across Polygenic Phenotypes	25
Multiple Sources of Uncertainty Confound Inference of Historical Human Generation Times	25
Hydrophobicity-Driven Increases in Editing in Mitochondrial mRNAs during the Evolution of Kinetoplastids	25
Functional determinants and evolutionary consequences of pleiotropy in complex and Mendelian traits	24
Redundant and Singular Regulatory Elements Underlie the Rapidly Evolving Pigmentation of Drosophila	24
Single-cell and Spatial Transcriptomics Illuminate Bat Immunity and Barrier Tissue Evolution	24
Loss of Timeless Underlies an Evolutionary Transition within the Circadian Clock	24
A General Principle of Neuronal Evolution Reveals a Human-Accelerated Neuron Type Potentially Underlying the High Prevalence of Autism in Humans	24
Antimutator and Mutational Spectrum Effects Can Combine to Reduce Evolutionary Potential in Escherichia coli ΔnudJ	24
Histone H3K27 Methylation Perturbs Transcriptional Robustness and Underpins Dispensability of Highly Conserved Genes in Fungi	24
Functional Characterization of Luciferase in a Brittle Star Indicates Parallel Evolution Influenced by Genomic Availability of Haloalkane Dehalogenase	24
Adaptation and Cryptic Pseudogenization in Penguin Toll-Like Receptors	23
The Convergent Evolution of Hummingbird Pollination Results in Repeated Floral Scent Loss Through Gene Downregulation	23
Cold-Driven Hemoglobin Evolution in Antarctic Notothenioid Fishes Prior to Hemoglobin Gene Loss in White-Blooded Icefishes	23
Resolving the stasis-dynamism paradox: Genome evolution in tree ferns	23
A Near-Deterministic Mutational Hotspot in Pseudomonas fluorescens Is Constructed by Multiple Interacting Genomic Features	23
Whole-Genome Resequencing of Worldwide Wild and Domestic Sheep Elucidates Genetic Diversity, Introgression, and Agronomically Important Loci	23
The Population History of Domestic Sheep Revealed by Paleogenomes	23
The Carbon Footprint of Bioinformatics	23
Premetazoan Origin of Neuropeptide Signaling	22
Reused Protein Segments Linked to Functional Dynamics	22
Gene Regulatory Networks of Epidermal and Neural Fate Choice in a Chordate	22
Decoding the Fundamental Drivers of Phylodynamic Inference	22
Erratum to: Adaptive Introgression Facilitates Adaptation to High Latitudes in European Aspen (Populus Tremula L.)	22
Large-Scale Chromosomal Changes Lead to Genome-Level Expression Alterations, Environmental Adaptation, and Speciation in the Gayal (Bos frontalis)	22
GnT Motifs Can Increase T:A→G:C Mutation Rates Over 1000-fold in Bacteria	22
The Narrow Footprint of Ancient Balancing Selection Revealed by Heterokaryon Incompatibility Genes in Aspergillus fumigatus	22
Measuring the Efficiency of Purging by non-random Mating in Human Populations	22
PRD-Class Homeobox Genes in Bovine Early Embryos: Function, Evolution, and Overlapping Roles	22
Correction to: Micro-RNA Clusters Integrate Evolutionary Constraints on Expression and Target Affinities: The miR-6/5/4/286/3/309 Cluster in Drosophila	22
Putative Signals of Generalist Plant Species Adaptation to Local Pollinator Communities and Abiotic Factors	22
Convergent Molecular Evolution Associated With Repeated Transitions to Gregarious Larval Behavior in Heliconiini	22
Synergism, Bifunctionality, and the Evolution of a Gradual Sensory Trade-off in Hummingbird Taste Receptors	22
Genomic Shifts, Phenotypic Clines, and Fitness Costs Associated With Cold Tolerance in the Asian Tiger Mosquito	22

Uncovering the Genomic Basis of Infection Through Co-genomic Sequencing of Hosts and Parasites	22
Deciphering the Role of Rapidly Evolving Conserved Elements in Primate Brain Development and Exploring Their Potential Involvement in Alzheimer's Disease	21
Canalization of the Polygenic Risk for Common Diseases and Traits in the UK Biobank Cohort	21
Robustness of Ancestral Sequence Reconstruction to Among-site and Among-lineage Evolutionary Heterogeneity	21
Contrasting Patterns of Single Nucleotide Polymorphisms and Structural Variation Across Multiple Invasions	21
Diversity and Evolution of Frog Visual Opsins: Spectral Tuning and Adaptation to Distinct Light Environments	21
The Neurodevelopmental Gene MSANTD2 Belongs to a Gene Family Formed by Recurrent Molecular Domestication of Harbinger Transposons at the Base of Vertebrates	21
HAlign 3: Fast Multiple Alignment of Ultra-Large Numbers of Similar DNA/RNA Sequences	21
Genetic Diversity, Heteroplasmy, and Recombination in Mitochondrial Genomes ofDaphnia pulex,Daphnia pulicaria, andDaphnia obtusa	21
Sequence Divergence and Retrotransposon Insertion Underlie Interspecific Epigenetic Differences in Primates	21
Evolutionary Shortcuts via Multinucleotide Substitutions and Their Impact on Natural Selection Analyses	21
Patterns of Fitness and Gene Expression Epistasis Generated by Beneficial Mutations in the rho and rpoB Genes of Escherichia coli during High-Temperature Adaptation	21
TF-High-Evolutionary: In Vivo Mutagenesis of Gene Regulatory Networks for the Study of the Genetics and Evolution of the Drosophila Regulatory Genome	20
Kingdom-Wide Analysis of Fungal Protein-Coding and tRNA Genes Reveals Conserved Patterns of Adaptive Evolution	20
Horizontally Acquired Cellulases Assist the Expansion of Dietary Range inPristionchusNematodes	20
Aging at Evolutionary Crossroads: Longitudinal Gene Co-expression Network Analyses of Proximal and Ultimate Causes of Aging in Bats	20
Signatures of Adaptation and Purifying Selection in Highland Populations of Dasiphora fruticosa	20
Genomic Evidence for the Nonpathogenic State in HIV-1–Infected Northern Pig-Tailed Macaques	20
Five-leaf Generalizations of the D-statistic Reveal the Directionality of Admixture	20
Road to Extinction? Past and Present Population Structure and Genomic Diversity in the Koala	20
A Deep-Learning Approach for Inference of Selective Sweeps from the Ancestral Recombination Graph	20
Consequences of Substitution Model Selection on Protein Ancestral Sequence Reconstruction	20
Wiring Between Close Nodes in Molecular Networks Evolves More Quickly Than Between Distant Nodes	20
Not Quite Lost in Translation: Mistranslation Alters Adaptive Landscape Topography and the Dynamics of Evolution	20
Exploring Large Protein Sequence Space through Homology- and Representation-based Hierarchical Clustering	20
Genetic Drift Shapes the Evolution of a Highly Dynamic Metapopulation	20
Genomic Insights into Adaptation to Karst Limestone and Incipient Speciation in East Asian Platycarya spp. (Juglandaceae)	20
Interactomics: Dozens of Viruses, Co-evolving With Humans, Including the Influenza A Virus, may Actively Distort Human Aging	19
Fixed Allele Differences Associated With the Centromere Reveal Chromosome Morphology and Rearrangements in a Reptile (Varanus acanthurus BOULENGER)	19
Redistribution of Ancestral Functions Underlies the Evolution of Venom Production in Marine Predatory Snails	19
Saltational Episodes of Reticulate Evolution in the Drosophila saltans Species Group	19
Evolutionary and Functional Analysis of Caspase-8 and ASC Interactions to Drive Lytic Cell Death, PANoptosis	19
The Evolution of Transglutaminases Underlies the Origin and Loss of Cornified Skin Appendages in Vertebrates	19
Nonhypermutator Cancers Access Driver Mutations Through Reversals in Germline Mutational Bias	19
The Codon Statistics Database: A Database of Codon Usage Bias	19
Changes in Ploidy Drive Reproduction Transition and Genomic Diversity in a Polyploid Fish Complex	19
Comparative Genomics Reveals Insights into the Divergent Evolution of Astigmatic Mites and Household Pest Adaptations	19
The High Mutational Sensitivity of ccdA Antitoxin Is Linked to Codon Optimality	19
Bioinformatics Analysis of Mutations Sheds Light on the Evolution of Dengue NS1 Protein With Implications in the Identification of Potential Functional and Druggable Sites	19
Reference-Free Variant Calling with Local Graph Construction with ska lo (SKA)	19
The Heterogeneity in the Landscape of Gene Dominance in Maize is Accompanied by Unique Chromatin Environments	19
Genetic Connections and Convergent Evolution of Tropical Indigenous Peoples in Asia	19
Prediction of Antibiotic Resistance Evolution by Growth Measurement of All Proximal Mutants of Beta-Lactamase	19
Sex-Specific Dominance of Gene Expression in Seed Beetles	19
Parallel Evolution of Ameloblastic scpp Genes in Bony and Cartilaginous Vertebrates	19
Computationally Efficient Demographic History Inference from Allele Frequencies with Supervised Machine Learning	19
Lifestyle Transitions in Fusarioid Fungi are Frequent and Lack Clear Genomic Signatures	18
Copy Number Variation Shapes Structural Genomic Diversity Associated With Ecological Adaptation in the Wild Tomato Solanum chilense	18
Extensive Recombination Suppression and Genetic Degeneration of a Young ZW Sex Chromosome System in Halfbeak Fish	18
Earliest Photic Zone Niches Probed by Ancestral Microbial Rhodopsins	18
Dynamics of Gene Loss following Ancient Whole-Genome Duplication in the CrypticParameciumComplex	18
Accurate, Scalable Structural Variant Genotyping in Complex Genomes at Population Scales	18
Divergence of Leptin Receptor and Interleukin-6 Receptor Subunit b in Early Vertebrate Evolution and Physiological Insights from the Sea Lamprey	18
Tensor Decomposition-based Feature Extraction and Classification to Detect Natural Selection from Genomic Data	18
Speciation Underpinned by Unexpected Molecular Diversity in the Mycorrhizal Fungal GenusPisolithus	18
Insufficient Evidence for a Severe Bottleneck in Humans During the Early to Middle Pleistocene Transition	18
Paleozoic Protein Fossils Illuminate the Evolution of Vertebrate Genomes and Transposable Elements	18
Spatiotemporal Tracking of Three Novel Transposable Element Invasions in Drosophila melanogaster over the Last 30 Years	18
Dynamics of Deleterious Mutations and Purifying Selection in Small Population Isolates	18
Phylogenetic Articulation of Uric Acid Evolution in Mammals and How It Informs a Therapeutic Uricase	18
General Theory of Specific Binding: Insights from a Genetic-Mechano-Chemical Protein Model	18
Inferring Long-Term and Short-Term Determinants of Genetic Diversity in Honey Bees: Beekeeping Impact and Conservation Strategies	18
Interlocus Gene Conversion, Natural Selection, and Paralog Homogenization	18
Independent Evolution of Sex Chromosomes and Male Pregnancy–Related Genes in Two Seahorse Species	17
Mitonuclear Sex Determination? Empirical Evidence from Bivalves	17
A Balanced Inversion Polymorphism Exhibits a Dominance Reversal at the Gene Expression Level that Depends on Developmental Context	17
Dietary, Cultural, and Pathogens-Related Selective Pressures Shaped Differential Adaptive Evolution among Native Mexican Populations	17
Deleterious Mutations and the Rare Allele Burden on Rice Gene Expression	17
Insights into RAG Evolution from the Identification of “Missing Link” Family A RAGL Transposons	17
DegronMD: Leveraging Evolutionary and Structural Features for Deciphering Protein-Targeted Degradation, Mutations, and Drug Response to Degrons	17
PhyloAcc-GT: A Bayesian Method for Inferring Patterns of Substitution Rate Shifts on Targeted Lineages Accounting for Gene Tree Discordance	17
Comprehensive annotation of olfactory and gustatory receptor genes and transposable elements revealed their evolutionary dynamics in aphids	17
Convergent Adaptation of Ootheca Formation as a Reproductive Strategy in Polyneoptera	17
Adaptive Capacity of a DNA Polymerase Clamp-loader ATPase Complex	17
40th Anniversary Virtual Issues: Genomic Innovations in Extremophiles	17
Fortieth Anniversary Virtual Issues: Microbial Diversity and the Tree of Life	17
Rewinding the Ratchet: Rare Recombination Locally Rescues Neo-W Degeneration and Generates Plateaus of Sex-Chromosome Divergence	17
A High-Quality Blue Whale Genome, Segmental Duplications, and Historical Demography	17
The Length of Haplotype Blocks and Signals of Structural Variation in Reconstructed Genealogies	17
The Emergence of SARS-CoV-2 Variants of Concern Is Driven by Acceleration of the Substitution Rate	17
Developmental Selection and the Perception of Mutation Bias	17
Biases in ARG-Based Inference of Historical Population Size in Populations Experiencing Selection	17
Phenotypic and Genotypic Adaptation of Escherichia coli to Thermal Stress is Contingent on Genetic Background	16
Correction to: Deleterious and Adaptive Mutations in Plant Germplasm Conserved Ex Situ	16
Comparing Phylogeographies to Reveal Incompatible Geographical Histories within Genomes	16
Comparative Population Transcriptomics Provide New Insight into the Evolutionary History and Adaptive Potential of World Ocean Krill	16
The Complex History of Genome Duplication and Hybridization in North American Gray Treefrogs	16
The Evolutionary History of Drosophila simulans Y Chromosomes Reveals Molecular Signatures of Resistance to Sex Ratio Meiotic Drive	16
The Expected Behaviors of Posterior Predictive Tests and Their Unexpected Interpretation	16
Giant Starship Elements Mobilize Accessory Genes in Fungal Genomes	16
Genetic and Structural Analysis of SARS-CoV-2 Spike Protein for Universal Epitope Selection	16
Genomics of Secondarily Temperate Adaptation in the Only Non-Antarctic Icefish	16
Slow Protein Dynamics Elicits New Enzymatic Functions by Means of Epistatic Interactions	16
Adaptation in Unstable Environments and Global Gene Losses: Small but Stable Gene Networks by the May–Wigner Theory	16
Citrullination Was Introduced into Animals by Horizontal Gene Transfer from Cyanobacteria	16