Journal of Biomolecular Structure & Dynamics

Papers
(The TQCC of Journal of Biomolecular Structure & Dynamics is 6. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-12-01 to 2025-12-01.)
ArticleCitations
Structural and functional characterization of RNA dependent RNA polymerase of Macrobrachium rosenbergii nodavirus (MnRdRp)67
Immunoinformatics-driven approach for development of potential multi-epitope vaccine against the secreted protein FlaC of Campylobacter jejuni59
XRD/DFT, Hirshfeld surface analysis and molecular modelling simulations for unfolding reactivity of newly synthesized vanillin derivatives: excellent optical, NLO and protein binding efficiency57
Crystallographic mining driven computer-guided approach to identify the ASK1 inhibitor likely to perturb the catalytic region56
Harnessing allosteric inhibition: prioritizing LIMK2 inhibitors for targeted cancer therapy through pharmacophore-based virtual screening and essential molecular dynamics56
Identification of potent inhibitors targeting Tribolium castaneum GSTe2 via structure-based screening and molecular dynamics simulation52
Structural basis of multi-target interactions of Henna Dye Lawsone: an experimental and theoretical evaluation48
Structural and molecular investigation of the impact of S30L and D88N substitutions in G9R protein on coupling with E4R from Monkeypox virus (MPXV)48
Unearthing the inhibitory potential of phytochemicals from Lawsonia inermis L. and some drugs against dengue virus protein NS1: an in silico 45
Interfacing manganese-based carbonaceous nanocomposites with plasma components: insights on protein interaction, structure and opsonization44
Insights into dynamic changes in ADC-7 and P99 cephalosporinases using small angle x-ray scattering (SAXS)42
iHBPs-VWDC: variable-length window-based dynamic connectivity approach for identifying hormone-binding proteins40
Genetic polymorphisms in Nrf2 and FoxO1: implications for antioxidant enzyme activity in diabetes38
In silico designed microtubule-stabilizer drugs against tauopathy in Alzheimer’s disease37
Correction36
Correction36
Accelerating the identification of the allergenic potential of plant proteins using a stacked ensemble-learning framework35
Comparative analysis of three-pillared and four-pillared synthetic glucose receptor using molecular dynamics simulations: a case study34
Phytochemical study of Lantana camara flowers, ecotoxicity, antioxidant, in vitro and in silico acetylcholi34
Identification of Zika virus NS2B-NS3 protease and NS5 polymerase inhibitors by structure-based virtual screening of FDA-approved drugs34
In-silico identification of potential peptide inhibitors to disrupt NLRP3 inflammasome complex formation by blocking NLRP3-ASC pyrin-pyrin interactions34
Deciphering the conformational stability of MazE7 antitoxin in Mycobacterium tuberculosis from molecular dynamics simulation study33
In silico analysis of identified molecules using LC–HR/MS of Cupressus sempervirens L. ethyl acetate fraction against three monkeypox virus targets31
Structure-based identification of potential natural compound inhibitors targeting bacterial cytoskeleton protein FtsZ from Acinetobacter baumannii by computational studi31
Identifying Isoononin and Candidissiol as Rho-associated protein kinase 1 (ROCK1) inhibitors: a combined virtual screening and MD simulation approach31
Supervised screening of Tecovirimat-like compounds as potential inhibitors for the monkeypox virus E8L protein31
Role of triterpenoid derivatives from Centella asiatica as quantum chemical calculations31
Structural analysis of human ATE1 isoforms and their interactions with Arg-tRNA Arg31
Evaluation of apigenin-based biflavonoid derivatives as potential therapeutic agents against viral protease (3CLpro) of SARS-CoV-2 via molecular docking, molecular dynamics and quantum mechanics studi30
An insight into the binding and inhibition of eye ζ-crystallin by the environmental toxin arsenic: implications in eye diseases30
Platinum (II) complex of isopentyl glycine ligand: DNA binding, molecular dynamic, and anticancer activity against breast cancer30
In silico engineering of Trichoderma harzianum acetylesterase for enhanced thermal stability and efficiency29
Field and atom-based 3D-QSAR models of chromone (1-benzopyran-4-one) derivatives as MAO inhibitors29
Computational investigations into structure and function impact of novel mutations identified in targeted exons from ovarian cancer cell lines29
In silico screening of dicoumarols as potential Mur B enzyme inhibitors in Mycobacterium tuberculosis29
Biological and molecular approaches of the degradation or decolorization potential of the hypersaline Lake Tuz Bacillus megaterium H2 isolate28
Exploring the novel protein drug target BAG33339.1 of Porphyromonas gingivalis : an integrative subtractive proteomics and structural dynamics study28
Switchable tetraplex elements in the heterogeneous nuclear ribonucleoprotein K promoter: micro-environment dictated structural transitions of G/C rich elements27
Structure-based molecular docking and molecular dynamics simulations study for the identification of dipeptidyl peptidase 4 inhibitors in type 2 diabetes27
Using integrated bioinformatics, network pharmacology and molecular docking to explore the mechanisms underlying the antidepressant effect of celastrol27
Molecular dynamics simulations of the SARS-CoV-2 Spike protein and variants of concern: structural evidence for convergent adaptive evolution27
Molecular dynamics simulation of the aggregation and folding mechanism of α-synuclein 47-56 in core peptide fragments induced by α-synuclein pentamer template27
Temperature-dependent hydration behavior of aqueous lysine: an approach towards protein binding through dielectric spectroscopy26
Structural organization of RDGB (retinal degeneration B), a multi-domain lipid transfer protein: a molecular modelling and simulation based approach25
Immunoinformatic approach for designing a multi-epitope vaccine against non-typhoidal salmonellosis using starvation-stress response proteins from Salmonella Oranienburg25
Computational analysis of structural and functional evaluation of the deleterious missense variants in the human CTLA4 gene25
Targeting two potential sites of SARS-CoV-2 main protease through computational drug repurposing25
Computational structure-guided approach to simulate delamanid and pretomanid binding to mycobacterial F420 redox cycling proteins: identification of key determinants of resistance25
Interactions between phenolic constituents of Scutellaria salviifolia and key targets associated with inflammation: network pharmacology, molecular docking analysis and in vitro assays24
A comprehensive examination of ACE2 receptor and prediction of spike glycoprotein and ACE2 interaction based on in silico analysis of ACE2 receptor24
Efficient proton shuttle makes SazCA an excellent CO2 hydration enzyme24
Structural and functional consequences of non-synonymous SNPs within the LAMA2 protein: a molecular dynamics perspective24
In silico studies for improving target selectivity of anti-malarial dual falcipain inhibitors vis-à-vis human cathepsins24
The promising impact of Bemcentinib and Repotrectinib on sleep impairment in Alzheimer’s disease24
Design, dynamic docking, synthesis, and in vitro validation of a novel DNA gyrase B inhibitor24
Dual targeting in prostate cancer with phytoconstituents as a potent lead: a computational approach for novel drug discovery23
Antioxidative and ROS-dependent apoptotic effects of Cuscuta reflexa Roxb. stem against human lung cancer: network pharmacology and in vitro 23
Identification of structural scaffold from interbioscreen (IBS) database to inhibit 3CLpro, PLpro, and RdRp of SARS-CoV-2 using molecular docking and dynamic simulation studies23
Antitumor activity against human promyelocytic leukemia andin silicostudies of some benzoxazines23
Comparative molecular docking analysis for analyzing the inhibitory effect of Anakinra and Ustekinumab against IL17F23
Synthesis, structural, characterization, antibacterial and antibiotic modifying activity, ADMET study, molecular docking and dynamics of chalcone ( E )-1-(4-aminophenyl)23
A comprehensive immunoinformatic analysis of chitin deacetylase’s and MP88 for designing multi-epitope vaccines against Cryptococcus neoformans23
Molecular dynamics simulations assisted investigation of phytochemicals as potential lead candidates against anti-apoptotic Bcl-B protein23
Accelerating the discovery of the beyond rule of five compounds that have high affinities toward SARS-CoV-2 spike RBD23
Bioisosteric modification of Linezolid identified the potential M. tuberculosis protein synthesis inhibitors to overcome the myelosuppression and serotonergic toxicity a23
Identification of deleterious nsSNPs in human HGF gene: in silico approach22
Artificial intelligence based virtual screening study for competitive and allosteric inhibitors of the SARS-CoV-2 main protease22
A simulation-based approach to target Zika virus RNA-dependent RNA polymerase with marine compounds for antiviral development22
Whole proteome analysis of MDR Klebsiella pneumoniae to identify mRNA and multiple epitope based vaccine targets against emerging nosocomial and lungs associated infecti22
Molecular insights of anticancer potential of usnic acid towards cervical cancer target proteins: An in silico validation for novel anti-cancer compound from lichens22
Synthesis, spectral characterisation, biocidal investigation, in-silico and molecular docking studies of 4-[(2-chloro-4-methylphenyl)carbamoyl]butanoic acid derived trio22
Insight into crystal structures and identification of potential styrylthieno[2,3- b ]pyridine-2-carboxamidederivatives against COVID-19 Mpro through structure-guided mod22
Discovery of potential phytochemicals as inhibitors of TcdB, a major virulence factors of Clostridioides difficile22
Oleanolic acid purified from the stem bark of Olax subscorpioidea Oliv. inhibits the function and catalysis of human 17 β 22
Synthesis of 4-hydroxy-L-proline derivatives as new non-classical inhibitors of human carbonic anhydrase II activity: an in vitro study22
Computer-aided anti-cancer drug discovery of EGFR protein based on virtual screening of drug bank, ADMET, docking, DFT and molecular dynamic simulation studies21
Toxicity of anthraquinone derivatives in relation to non-linear optical properties and electron correlation21
A reverse docking approach to explore the anticancer potency of natural compounds by interfering metastasis and angiogenesis21
An outlook of docking analysis and structure-activity relationship of pyrimidine-based analogues as EGFR inhibitors against non-small cell lung cancer (NSCLC)21
Evaluating chemotherapeutic potential of soya-isoflavonoids against high penetrance genes in triple-negative breast cancer21
Molecular insights to the anti-COVID-19 potential of α-, β- and γ-cyclodextrins21
Acalabrutinib as a novel hope for the treatment of breast and lung cancer: an in-silico proof of concept20
Comparative homology ofPleurotus ostreatuslaccase enzyme: Swiss model or Modeller?20
Network pharmacology and multitarget analysis of Nigella sativa in the management of diabetes and obesity: a computational study20
AI-enhanced computational discovery of promising ALK5 inhibitors in a ultra-large chemical space library for cardiovascular Disease therapy20
In silico mutagenesis on active site residues of Acinetobacter haemolyticus lipase KV1 for improved binding to polyethylene terephthalate (PET)20
From sleep to cancer to neurodegenerative disease: the crucial role of Hsp70 in maintaining cellular homeostasis and potential therapeutic implications20
The anticancer and EGFR-TK/CDK-9 dual inhibitory potentials of new synthetic pyranopyrazole and pyrazolone derivatives: X-ray crystallography, in vitro , and 20
In silico and NMR studies on pharmaceutical compounds with therapeutic action against Myasthenia Gravis20
Exploring potential ofPlasmodiumRUVBL proteins as anti-malarial drug target19
Deciphering the interaction mechanism of natural actives against larval proteins of Aedes aegypti to identify potential larvicides: a computational biology analysis19
Integrated multi-omic data analysis and validation with yeast model show oxidative phosphorylation modulates protein aggregation in amyotrophic lateral sclerosis19
Development of new benzil-hydrazone derivatives as anticholinesterase inhibitors: synthesis, X-ray analysis, DFT study and in vitro / in silico 19
Normal mode analysis and comparative study of intrinsic dynamics of alcohol oxidase enzymes from GMC protein family19
Laccase catalytic activity shielded by SiO 2 nanostructured materials: an in vitro and in silico approa19
Permeability of antioxidants through a lipid bilayer model with coarse-grained simulations19
Molecular docking and MD simulations reveal protease inhibitors block the catalytic residues in Prp8 intein of Aspergillus fumigatus: a potential target for antimycotics19
Single-walled silicon nanotube as an exceptional candidate to eliminate SARS-CoV-2: a theoretical study19
Glycosylation and charge distribution orchestrates the conformational ensembles of a biotechnologically promissory phytase in different pHs – a computational study19
Functional analysis, virtual screening, and molecular dynamics revealed potential novel drug targets and their inhibitors against cardiovascular disease in human19
Computational screening of phytocompounds from C. amboinicus identifies potential inhibitors of influenza A (H3N2) virus by targeting hemagglutinin19
Simulation and practical investigation of carbonic anhydrase stability in an industrial solvent system of methyl diethanolamine for carbon dioxide capture19
Uncovering the potential of the anchor site for enhancing Golgi alpha-mannosidase II selectivity using molecular dynamics simulations and free energy calculations18
Intelligent deep learning-based disease monitoring system in 5G network using multi-disease big data18
Quantitative structure activity relationship studies of androgen receptor binding affinity of endocrine disruptor chemicals with index of ideality of correlation, their molecular docking, molecular dy18
3β-Acetoxy-21α-H-hop-22(29)ene, a novel multitargeted phytocompound against SARS-CoV-2: in silico screening18
Investigation of the dual role of acyl phloroglucinols as a new hope for antibacterial and anti-SARS-CoV-2 agents employing integrated in vitro and multi-phase in silico approaches18
Interaction of MnTOEtPyP4 porphyrin with DNA18
Identification of phytocompounds as potent inhibitors of sodium/glucose cotransporter-2 leading to diabetes treatment18
Screening a library of potential competitive inhibitors against bacterial threonyl-tRNA synthetase: DFT calculations18
Novel integrated Omics based computational approach for drug repurposing for non-muscle invasive bladder cancer (NMIBC)18
Homology modeling of human BAP1 and analysis of its binding properties through molecular docking and molecular dynamics simulation18
Computational binding affinity and molecular dynamic characterization of annonaceous acetogenins at nucleotide binding domain (NBD) of multi-drug resistance ATP-binding cassette sub-family B member 1 18
Repurposing FDA-approved drugs as HIV-1 integrase inhibitors: an in silico investigation18
Identifying diseases associated with Post-COVID syndrome through an integrated network biology approach18
Characterisation and substrate binding modes of exopolygalacturonase PGQ1 from Saccharobesus litoralis18
Electrostatic interactions of enzymes in non-aqueous conditions: insights from molecular dynamics simulations18
Synthesis, antitubercular profile and molecular docking studies of quinazolinone-based pyridine derivatives against drug-resistant tuberculosis18
In silico discovery of potent and selective Janus kinase 3 (JAK3) inhibitors through 3D-QSAR, covalent docking, ADMET analysis, molecular dynamics simulations, and binding free energy of pyrazolopyrim18
Molecular insights into particular mutations impact on Taq polymerase dynamics and structure: a molecular dynamics simulation study17
Isolation and structure elucidation of a steroidal moiety from Withania somnifera and in silico evaluation of antimalarial efficacy against artemisinin resistance Plasmodium falciparu17
Binding of the commonly used antioxidants (quercetin, resveratrol, and dihydrolipoic acid) to major circulating proteins – spectroscopic and in silico docking and molecu17
Characterization of thiamine pyrophosphokinase of vitamin B1 biosynthetic pathway as a drug target of Leishmania donovani17
Molecular dynamics simulation and structural analysis of aquaporin Z from an Antarctic Pseudomonas sp. strain AMS317
Discovery of a novel inhibitor against urokinase-type plasminogen activator, a potential enzyme with a role in atherosclerotic plaque instability17
Investigating the chemistry of newly synthesized acetamide linker based purines/pyrimidine derivatives towards DNA receptor site using in silico and in vi17
Analysis of the binding pattern of NIK inhibitors by computational simulation17
In-vitro antimicrobial activity of AF-DP protein and in-silico approach of cell membrane disruption17
Virtual screening and molecular dynamics reveal the potential biochemical impacts of microplastics on human protein targets17
Identification of natural products against enoyl-acyl-carrier-protein reductase in malaria via combined pharmacophore modeling, molecular docking and simulations studies17
Computational insights into pediatric adenovirus inhibitors: in silico strategies for drug repurposing17
(2-Cyclohexyl-1-methylpropyl) cyclohexane isolated from garlic extract exhibits antidepressant-like activity: extraction, docking, drug-like properties, molecular dynamics simulations and MM/GBSA stud16
Assessment of iridoids and their similar structures as antineoplastic drugs by in silico approach16
Computer-aided drug discovery of c-Abl kinase inhibitors from plant compounds against chronic myeloid leukemia16
A strategy to optimize the peptide-based inhibitors against different mutants of the spike protein of SARS-CoV-216
Insights into molecular docking and dynamics to reveal therapeutic potential of natural compounds against P53 protein16
Identification of a potential inhibitor for New Delhi metallo-β-lactamase 1 (NDM-1) from FDA approved chemical library- a drug repurposing approach to combat carbapenem resistance16
Characterization of the binding interaction between bovine hemoglobin and riboflavin sodium phosphate: multi-spectroscopic analysis and molecular docking studies16
Cefoperazone targets D-alanyl-D-alanine carboxypeptidase (DAC) to control Morganella morganii -mediated infection: a subtractive genomic and molecular dynamics approach16
Insilico molecular modelling to identify PDK-1 targeting agents based on its protein–protein docking interaction16
Discovery of novel potent drugs for influenza by inhibiting the vital function of neuraminidase via fragment-based drug design (FBDD) and molecular dynamics simulation strategies16
Exploring the anti-cancer properties of Carissa carandas as a multi-targeted approach against breast cancer16
Coumarin derivative as a potent drug candidate against triple negative breast cancer targeting the frizzled receptor of wingless-related integration site signaling pathway16
Exploring molecular docking with MM-GBSA and molecular dynamics simulation to predict potent inhibitors of cyclooxygenase (COX-2) enzyme from terpenoid-based active principles of Zingib16
Integrated gene expression profiling and functional enrichment analyses to discover biomarkers and pathways associated with Guillain-Barré syndrome and autism spectrum disorder to identify new therape16
In silico identification of potential drug-like molecules against G glycoprotein of Nipah virus by molecular docking, DFT studies, and molecular dynamic simulation16
Unraveling the structural aspects of the G-quadruplex in SMO promoter and elucidating its contribution in transcriptional regulation16
Computational Prediction of 3,5-Diaryl-1H-Pyrazole and spiropyrazolines derivatives as potential acetylcholinesterase inhibitors for alzheimer disease treatment by 3D-QSAR, molecular docking, molecula16
Atomic level and structural understanding of natural ligands inhibiting Helicobacter pylori peptide deformylase through ligand and receptor based screening, SIFT, molecular dynamics and DFT – a16
Elucidation of furanone as ergosterol pathway inhibitor in Cryptococcus neoformans16
Novel tetrazolyl-1,2,3-triazole derivatives as potent antimicrobial targets: design, synthesis and molecular docking techniques16
In the footsteps of an inhibitor unbinding from the active site of human carbonic anhydrase II16
Binding of Mammea A/AA (MA) to calf thymus DNA revealed by the ratiometric absorbance of MA in the UV-visible range molecular dynamic simulations and TD-DFT calculations16
Molecular docking and biological activities of Ni(II), Cu(II) and Co(II) complexes with a new potentially hexadentate polyamine ligand; X-ray crystal structure of the Cu(II) complex16
Effect of hydrophobicity and size of the ligands on the intercalative binding interactions of some metallo-surfactants containing π-conjugated systems with yeast tRNA15
Repurposing of SARS-CoV-2 compounds against Marburg Virus using MD simulation, mm/GBSA, PCA analysis, and free energy landscape15
Computational design of candidate multi-epitope vaccine against SARS-CoV-2 targeting structural (S and N) and non-structural (NSP3 and NSP12) proteins15
Leveraging immunoinformatics for developing a multi-epitope subunit vaccine against Helicobacter pylori and Fusobacterium nucleatum15
In silico investigation of binding propensity of hematoxylin derivative and damnacanthal for their potential inhibitory effect on HIV-1 Vpr from different subtypes15
A new horizon in the phosphorylated sites of AGA: the structural impact of C163S mutation in aspartylglucosaminuria through molecular dynamics simulation15
Atom-based 3D-QSAR and DFT analysis of 5‐substituted 2‐acylaminothiazole derivatives as HIV-1 latency-reversing agents15
Computational identification and exploration of novel FGFR tyrosine kinase inhibitors for the treatment of cholangiocarcinoma15
Synthesis, characterization, biological activity and computation-based efficacy of cobalt(II) complexes of biphenyl-2-ol against SARS-CoV-2 virus15
In silico analysis of comparative affinity of phytosiderophore and bacillibactin for iron uptake by YSL15 and YSL18 receptors of Oryza sativa15
Synthesis, biological evaluation and molecular modeling studies of modulated benzyloxychalcones as potential acetylcholinesterase inhibitors15
Design and validation of a novel multi-epitopes vaccine against hantavirus15
Investigation for metallic crystals through chemical invariants, QSPR and fuzzy-TOPSIS15
Comprehensive examination on codon usage bias pattern of the Bovine Ephemeral fever virus15
Exploring staphylococcal superantigens to design a potential multi-epitope vaccine against Staphylococcus aureus : an in-silico reverse va15
Revisiting Aspergillus terreus MTCC6324 recombinant alcohol oxidase (rAOx): enhanced in-silico insight into structure, function, and subst15
Designing dual inhibitors against potential drug targets of Plasmodium falciparum -M17 Leucyl Aminopeptidase and Plasmepsins15
Paradoxical effect of Aβ on protein levels of ABCA1 in astrocytes, microglia, and neurons isolated from C57BL/6 mice: an in vitro and in silico study to elucidate the effect of Aβ on ABCA1 in the brai15
Dynamics of glycine, diphenylalanine, and tryptophan oligomers: computer simulation in an IR electric field with different forms and polarization15
CircRNA-miRNA-mRNA interactome analysis in endometrial cancer15
Identification of potential inhibitors of Fyn-Kinase from bioactive phytochemicals of Berberis lycium for therapeutic targeting of neurodegenerative dise15
Discovery of new quinoline and isatine derivatives as potential VEGFR-2 inhibitors: design, synthesis, antiproliferative, docking and MD simulation studies15
In silico molecular modeling and simulations of black tea theaflavins revealed theaflavin-3’-gallate as putative liver X receptor-beta agonist15
Identifying bioactive phytoconstituents as C-terminal Src kinase inhibitors: a virtual screening and molecular simulation approach15
A novel robust inhibitor of papain-like protease (PLpro) as a COVID-19 drug15
Exploring the binding behaviors between nisoldipine and bovine serum albumin as a model protein by the aid of multi-spectroscopic approaches and in silico15
Amalgamation of experimental strategies, computational simulation, and computer-assisted-theoretical analysis to decipher the interaction of newly synthesized plumbagin-indole-3-propionic ester with c15
Antimicrobial, antibiofilm, docking, DFT and molecular dynamics studies on click-derived isatin-thiosemicarbazone-1,2,3-triazoles15
Identification of potential bioactive natural compounds from Indonesian medicinal plants against 3-chymotrypsin-like protease (3CLpro) of SARS-CoV-2: molecular docking, ADME/T, molecular dy15
Function identification and characterization of Oryza sativa ZRT and IRT-like proteins computationally for nutrition and biofortification in rice14
In silico evaluation of the inhibitory potential of nucleocapsid inhibitors of SARS-CoV-2: a binding and energetic perspective14
Revisiting Plasmodium falciparum P-type ATPase 4 in malarial: ADMET, mutation effect, and molecular simulation studies of potential inhibitors14
Molecular modeling of ARF6 dysregulation caused by mutations in IQSEC214
Structure based virtual screening and discovery of novel inhibitors against FabD protein of Mycobacterium tuberculosis14
Quantum biochemistry description of PI3Kα enzyme bound to selective inhibitors14
Identification of neo-andrographolide compound targeting NS1 Lys14: an important residue in NS1 activity driving dengue pathogenesis14
In silico scanning of structural and functional deleterious nsSNPs in Arabidopsis thaliana ’s SOG1 protein, using molecular dynamic simulation approac14
In silico identification and characterization of small-molecule inhibitors specific to RhoG/Rac1 signaling pathway14
Activation segment of protein kinases: classification based on multidimensional analysis14
Epitopes mapping for identification of potential cross-reactive peptide against leptospirosis14
HPV and molecular mimicry in systemic lupus erythematosus and an impact of compiling B-cell epitopes and MHC-class II binding profiles with in silico evidence14
Pharmacological network study on the effect of 6-gingerol on cervical cancer using computerized databases14
Computational prioritization of deleterious human myelin protein zero gene mutations reveals structural disruption and potential myelin dysfunction through dynamic simulations and stability analysis14
Multi-spectroscopic and thermodynamic profiles on HSA binding of Cassia fistula leaf based potential antibacterial and anticancer silver nanoparticles14
Network pharmacology and molecular docking approach to predict the oral and topical therapeutic mechanisms of Panax ginseng ’s active compounds on atopic dermatitis14
Structural basis of the key residue W320 responsible for Hsp90 conformational change14
Unraveling the gender-specific molecular landscape of lung squamous cell carcinoma progression14
In-silico development of multi-epitope subunit vaccine against lymphatic filariasis14
Integrating transcriptomics with disease–gene network and identification of EGFR kinase target: inhibitor discovery through virtual screening of natural compounds for brain cancer therapy14
Effect of osmolytes-TMAO and serine on the binding and stability of 5-fluorouracil with calf thymus DNA (CT-DNA): biophysical insight14
Assessment of binding affinity of major bioactive compounds from Momordica charantia , Azadirachta indica , Nelumbo nucifer14
Integrative analysis of the anti-diabetic inhibitor GW9508 binding to human serum albumin: computational, spectroscopic and ITC insights14
A computational study of potent series of selective estrogen receptor degraders for breast cancer therapy14
Disordered regions endow structural flexibility to shell proteins and function towards shell–enzyme interactions in 1,2-propanediol utilization microcompartment14
Effect of antidiabetic drug metformin hydrochloride on micellization behavior of cetylpyridinium bromide in aqueous solution14
Molecular dynamics of transferrin receptor binder peptides: unlocking blood-brain barrier for enhanced CNS drug delivery14
Structural and functional insights into a novel homozygous missense pathogenic variant in CUL7 identified in consanguineous Pakistani family14
The dynamics of Escherichia coli FtsZ dimer14
In silico identification of cyclosporin derivatives as potential inhibitors for RdRp of rotavirus by molecular docking and molecular dynamic studies13
In-silico modeling of the interplay between APOE4, NLRP3, and ACE2-SPIKE complex in neurodegeneration between Alzheimer and SARS-CoV: implications for understanding pathogenesis and13
Investigation of photoluminescence and DNA binding properties of benzimidazole compounds containing benzophenone group13
Benzoic acid, 4-hydroxy-, methyl ester from Smilax zeylanica Linn emerges as a potent inhibitor of CD27/CD70 signaling pathway13
Design, synthesis, and computational studies of benzimidazole derivatives as new antitubercular agents13
Design, synthesis, molecular docking, molecular dynamic simulation, and MMGBSA analysis of 7-O-substituted 5-hydroxy flavone derivatives13
A network pharmacology, molecular docking and in vitro investigation of Picrorhiza kurroa extract for the 13
A new approach used in docking study for predicting the combination drug efficacy in EML4-ALK target of NSCLC13
Insightful t-SNE guided exploration spotlighting Palbociclib and Ribociclib analogues as novel WEE1 kinase inhibitory candidates13
In silico strategies to recognize pharmacological constraints contrary to COX-2 and 5-LOX13
Integrated virtual screening and MD simulation study to discover potential inhibitors of Lyn-kinase: targeting cancer therapy13
Green synthesis, antibacterial and antifungal evaluation of new thiazolidine-2,4-dione derivatives: molecular dynamic simulation, POM study and identification of antitumor pharmacophore sites13
Design, synthesis, molecular modeling, DFT, ADME and biological evaluation studies of some new 1,3,4-oxadiazole linked benzimidazoles as anticancer agents and aromatase inhibitors13
Pharmacokinetics and drug-likeness of anti-cancer traditional Chinese medicine: molecular docking and molecular dynamics simulation study13
Elucidating the role of N440K mutation in SARS-CoV-2 spike – ACE-2 binding affinity and COVID-19 severity by virtual screening, molecular docking and dynamics approach13
AlteQ: a new complementarity principle-centered method for the evaluation of docking poses13
Computational investigation of potent inhibitors against YsxC: structure-based pharmacophore modeling, molecular docking, molecular dynamics, and binding free energy13
The multi-protein targeting potential of bioactive syringin in inflammatory diseases: using molecular modelling and in-silico analysis of regulatory elements13
Purification of ursolic acid and β-sitosterol from endophytic Alternaria alternata for their alpha-amylase inhibitory activity13
Structural and functional effects of the L84S mutant in the SARS-COV-2 ORF8 dimer based on microsecond molecular dynamics study13
Evaluation of the efficacy of marine natural products against PARP-1/2 proteins in high-grade serous ovarian cancer: insights into MD and SMD simulations13
SAXS data based glycosylated models of human alpha-1-acid glycorprotein, a key player in health, disease and drug circulation13
Cheminformatics-based discovery of new organoselenium compounds with potential for the treatment of cutaneous and visceral leishmaniasis13
Systems biology approach delineates critical pathways associated with disease progression in rheumatoid arthritis13
Genome-wide identification and evolutionary analysis of the FGF gene family in buffalo13
Insights from the molecular mechanism of pyrazinamide to mutated pyrazinamidase linked to the pncA gene in clinical isolates of Mycobacterium tuberculosis13
Synthesis, molecular docking, and molecular dynamic simulation studies of new 1,3,4-thiadiazole derivatives as potential apoptosis inducers in A549 lung cancer cell line13
Chimgin from Ferula haussknechtii as AChE inhibitor and confirmation of the absolute configuration13
Characterization of SARS-CoV-2 omicron variants from Iran and evaluation of the effect of mutations on the spike, nucleocapsid, ORF8, and ORF9b proteins function13
In vitro and in silico exploration of newly synthesized triazolyl- isonicotinohydrazides as potent antitubercular agents13
Synthesis and anxiolytic effect of europium metallic complex containing lapachol [Eu(DBM) 3 . LAP] in adult zebrafish through serotonergic neurotransmission: 13
Evaluation of the inhibitory potency of anti-dengue phytocompounds against DENV-2 NS2B-NS3 protease: virtual screening, ADMET profiling and molecular dynamics simulation investigations13
Synthesis and computational insights of flavone derivatives as potential estrogen receptor alpha (ER-α) antagonist13
Flavone-C-glycosides from Cassia auriculata L. as possible inhibitors of phosphodiesterase-5 (PDE5): in vitro , molecular docking and mole13
Electric field-induced conformational dynamics of CA9: a potential biomarker for glioblastoma multiforme13
Drug design of new therapeutic agents: molecular docking, molecular dynamics simulation, DFT and POM analyses of new Schiff base ligands and impact of substituents on bioactivity of their potential an13
Identification of potential sclerostin inhibiting flavonoids from Oroxylum indicum : an insilico approach13
TULP3 NLS inhibition: anin silicostudy to hamper cargo transport to nucleus12
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