OOIR: Observatory of International Research

Papers

(The median citation count of Genome is 2. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-06-01 to 2025-06-01.)

Article	Citations
Correction: Barcoding lichen-forming fungi using 454 pyrosequencing is challenged by artifactual and biological sequence variation	40
Mitogenome evolution in Trichoderma afroharzianum strains: for a better understanding of distinguishing genus	25
Marsupial satellite DNA as faithful reflections of long-terminal repeat retroelement structure	21
Genome-wide identification of bZIP transcription factor genes related to starch synthesis in barley (Hordeum vulgare L.)	19
Asp/ASPM phospho-regulation throughout the cell cycle	16
Linking the spatial and genomic structure of adaptive potential for conservation management: a review	13
The plastome of ArcticOxytropis arctobia(Fabaceae) is significantly different from that ofO. splendensand other related species	13
Genome Publication Awards 2021	13
Single-cross prediction with imputed multi-omic data: A case study in rapeseed	12
Genetic diversity of Asian and European common wheat lines assessed by fluorescence in situ hybridization	11
Whole genome sequencing and analysis of benzo(a)pyrene-degrading bacteria Bacillus cereus M72-4	10
Meta-analyses of the global multilocus genotypes of the human pathogen Campylobacter jejuni	10
Differential DNA methylation analysis reveals key genes in Chinese Qingyu and Landrace pigs	10
Genome assembly, analysis, and mining of Kocuria flava NIO_001: a thiopeptide antibiotic synthesizing bacterium isolated from marine sponge	10
Comparative analysis of transposable elements dynamics in fish with different sex chromosome systems	10
Cannabis, the multibillion dollar plant that no genebank wanted	9
Reduced representation bisulfite sequencing (RRBS) analysis reveals variation in distribution and levels of DNA methylation in white birch (Betula papyrifera) exposed to nickel	9
Molecular characterization and chromosomal distribution of <i>Tc1/mariner</i> transposons in <i>Boana </i>species (Anura, Hylidae)	8
Karyotype structure and cytogenetic markers of Amoimyrmex bruchi and Amoimyrmex silvestrii: contribution to understanding leaf-cutting ant relationships	8
Genomics-based taxonomy to clarify cannabis classification	8
Evidence for hexasomic inheritance in Chrysanthemum morifolium Ramat. based on analysis of EST-SSR markers	8
Aeromonas salmonicida isolates from Canada demonstrate wide distribution and clustering among mesophilic strains	8
Identification of adulteration in the market samples of saffron using morphology, HPLC, HPTLC, and DNA barcoding methods	8
Chloroplast genome of Ecbolium viride (Forssk.) Alston: plastome evolution and phylogenomics of Justiceae (Acanthaceae, Acanthoideae)	8
Genes and proteins associated with ribeye area and meat tenderness in a commercial Nellore cattle population	8

Introgressed DNA within a Zea mays near-isogenic line displays lower levels of 24nt sRNA expression than the homologous region from the recurrent parent	7
DNA at the whim of the water: environmental DNA as a course-based undergraduate research experience	7
Detection of polymorphisms in the prion-like protein Doppel (PRND) gene in Jeju black cattle	7
Alfalfa transcriptome profiling provides insight into miR156-mediated molecular mechanisms of heat stress tolerance	7
Microbiomes of willow-galling sawflies: effects of host plant, gall type, and phylogeny on community structure and function	6
Transposable element landscapes illuminate past evolutionary events in the endangered fern Vandenboschia speciosa	6
Pangenomic analysis of three putative hydrocarbon degrading genera <i>Limnohabitans</i>, <i>Aquabacterium</i>, and <i>Novosphingobium</i> collected from freshwater	6
Lack of variation in nuclear DNA content in avian muscle	6
Genetic insights: integrating DNA barcoding with taxonomy in the study of Baccaurea (Phyllanthaceae)	6
First insights into the satellitomes and new evidence for the absence of canonical insect telomere in the Neuroptera order	6
The filamins of Drosophila	6
Paenibacillus terrae NK3-4 regulates the transcription of growth-related and stress resistance-related genes in rice	6
Heat shock responsive genes in Brassicaceae: genome-wide identification, phylogeny, and evolutionary associations within and between genera	6
Genome organization of major tandem repeats and their specificity for heterochromatin of macro- and microchromosomes in Japanese quail	6
Structure and genetic diversity of Canadian Maritimes wild hops	5
AVITI as an alternative to Illumina for low-cost genome-wide genotyping	5
Adjusting extracellular pH to prevent entry of SARS-CoV-2 into human cells	5
Whole-genome comparative analysis reveals genetic mechanisms of disease resistance and heat tolerance of tropicalBos indicuscattle breeds	5
Evolutionary speed of proteins in the genus Staphylococcus: a focus on proteins involved in natural competence	5
Fine mapping of a major QTL qPA7-1 for low hydrocyanic acid content in sorghum–sudangrass hybrid	5
Frequency of cytosine methylation in the adjacent regions of soybean retrotransposon SORE-1 depends on chromosomal location	5
Genes influencing deposition of melanin in breast muscle of the Xuefeng black bone chicken based on bioinformatic analysis	5
Using telomeric length measurements and methylation to understand the karyotype diversification of Ctenomys minutus (a small fossorial mammal)	5
Development and application of whole-chromosome painting of chromosomes 7A and 8A of Arachis duranensis based on chromosome-specific single-copy oligonucleotides	5
An endogenous retrovirus presumed to have been endogenized or relocated recently in a marsupial, the red-necked wallaby	5
Analysis of the winter oilseed rape recombination landscape suggests maternal–paternal bias	5
Taxonomic classification of the bacterial endosymbiont Wolbachia based on next-generation sequencing: is there molecular evidence for its presence in tardigrades?	4
Development of EST-SSR markers in Bergenia ciliata using de novo transcriptome sequencing	4
Satellite DNAs, heterochromatin, and sex chromosomes of the wattled jacana (Charadriiformes; Jacanidae): a species with highly rearranged karyotype	4
Comparative genome analysis ofPasteurella multocidastrains of porcine origin	4
Identification of alternative splicing and RNA-binding proteins involved in myocardial ischemia–reperfusion injury	4
Identification and characterization of heat-responsive microRNAs at the booting stage in two rice varieties, 9311 and Nagina 22	4
Functional analysis of co-expression networks of zebrafish ace2 reveals enrichment of pathways associated with development and disease	4
Gene regulation supporting sociality shared across lineages and variation in complexity	4
Candidate genes validation for intramuscular fat content of Nellore Cattle	4
Transcriptome profiling of differentially expressed genes of male and female inflorescences in spinach (Spinacia oleracea L.)	4
Specific amino acid changes correlate with pathogenic flavobacteria	4
Full-length transcriptome analysis and identification of genes involved in asarinin and aristolochic acid biosynthesis in medicinal plant Asarum sieboldii	4
Environmental drivers behind the genetic differentiation in mountain chickadees (Poecile gambeli)	4
Differences between predicted outer membrane proteins of Pasteurella multocida, Histophilus somni, and genotype 1 and 2 Mannheimia haemolytica strains isolated from cattle	3
Complete genome analysis of Pseudomonas furukawaii ZS1 isolated from grass carp (Ctenopharyngodon idellus) culture water	3
Analysis of apoptosis levels and MMP7 gene expression in ovaries of postpartum female rabbits after long-term use of LHRH-A3	3
Insights on mauritiana-like elements diversity in Mayetiola destructor and M. hordei (Diptera: Cecidomyiidae)	3
The complete chloroplast genome of Aristolochia fangchi provided insights into the phylogeny and species identification of Aristolochia	3
Understanding the genomics responses of freshwater zooplanktons to salinization: a research hotspot in a saltier world	3
Plant immune resilience to a changing climate: molecular insights and biotechnological roadmaps	3
High nucleotide similarity of three Copia lineage LTR retrotransposons among plant genomes	3
Chromosomal and molecular perspectives on Potamotrygon motoro (Müller & Henle, 1841) from central Amazon	3
Note of appreciation	3
Broad histone H4 monomethylation marks expressed genes involved in translation	3

Chromosome painting reveals the genomic structure of three polyploid species of Ipomoea	3
Authentication of garlic (Allium sativum L.) supplements using a trnL^UAA mini-barcode	3
Genetic diversity and positive signatures of selection in indigenous cattle breeds of Iran	3
Phylogenomics of transcriptionally active AP2/ERF and bHLH transcription factors and study of their promoter regions in Nothapodytes nimmoniana (J.Graham) Mabb	3
Note of appreciation	3
Circadian rhythm and immunity: decoding chrono-immunology using the model organism Drosophila melanogaster	3
Cytogenetic characterization and karyotype evolution in six Macroptilium species (Leguminosae)	3
SmFLS negatively regulates peel coloring of eggplant (Solanum melongena) under high temperature	2
Identification of full-length genes involved in the biosynthesis of β-caryophyllene and lupeol from the leaf transcriptome of Ayapana triplinervis	2
Identification and expression analysis of C2H2-zinc finger protein genes reveals their role in stress tolerance in Brassica napus	2
Understanding microchromosomal organization and evolution in four representative woodpeckers (Picidae, Piciformes) through BAC-FISH analysis	2
Chromosomes in the African frog genus Tomopterna (Pyxicephalidae) and probing the origin of tetraploid Tomopterna tandyi	2
miR-181a-5p is a potential candidate epigenetic biomarker in multiple sclerosis	2
Half-chromatid mutation as a possible cause of mosaic males and females in Hymenoptera and rare fertile male tortoiseshell cats	2
A quick guide to the calcium-dependent protein kinase family in Brassica napus	2
Investigating the expression of fertility-regulating LncRNAs in multiparous and uniparous Shal ewe's ovaries	2
Peroxisome inter-organelle cooperation in Drosophila	2
Genomic regions associated with coat color in Gir cattle	2
Identification of the 12-oxophytoeienoic acid reductase (OPR) gene family in pepper (Capsicum annuum L.) and functional characterization of CaOPR6 in pepper fruit development and	2
In-vitro anti-fungal assay and association analysis reveal a role for the Pinus monticola PR10 gene (PmPR10-3.1) in quantitative disease resistance to white pine blister rust	2
Conventional cytogenetics and microsatellite chromosomal distribution in social wasp Mischocyttarus cassununga (Ihering, 1903) (Vespidae, Polistinae, Mischocyttarini)	2
Fingerprint construction through genotyping by sequencing for applied breeding in Brassica rapa	2
DNA barcode analysis of the endangered green turtle (Chelonia mydas) in Mexico¹	2
Diversity and antigenic potentials of Mycoplasmopsis bovis secreted and outer membrane proteins within a core genome of strains isolated from North American bison and cattle	2
The evolution of genomic organization through chromosomal rearrangements in Arctic charr (Salvelinus alpinus)	2
Genomic regions associated with resistance to Fusarium wilt in castor identified through linkage and association mapping approaches	2
The repetitive DNA landscape in the brizantha agamic complex of Urochloa P. Beauv.	2
Abundance of distal repetitive DNA sequences in Capsicum L. (Solanaceae) chromosomes	2
Sequence-based identification of polyamine oxidase genes in Sorghum bicolor L.	2
The complete chloroplast genome of Persicaria perfoliata and comparative analysis with four medicinal plants of Polygonaceae	2
Association mapping identifies stable loci containing novel genes for developmental and reproductive traits in sorghum	2
Patterns of genome size evolution versus fraction of repetitive elements in statu nascendi species: the case of the willistoni subgroup of Drosophila (Diptera, Drosophilidae)	2
Differential expression analysis of soybean pod tissue between Canadian environments identifies differences in sulfur-containing amino acid-related gene expression	2
Genomic prediction in Brassica napus: evaluating the benefit of imputed whole-genome sequencing data	2
Genomic DNA methylation analysis reveals that BLNK is a key potential gene in the regulation of autophagy-related thyroid cancer progression	2
Molecular identification and DNA barcode screening of acaroid mites in ground flour dust	2
Autophagy in cell fate decisions: knowledge gained fromDrosophila	2