OOIR: Observatory of International Research

Papers

(The TQCC of Genome is 4. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-06-01 to 2025-06-01.)

Article	Citations
Correction: Barcoding lichen-forming fungi using 454 pyrosequencing is challenged by artifactual and biological sequence variation	40
Mitogenome evolution in Trichoderma afroharzianum strains: for a better understanding of distinguishing genus	25
Marsupial satellite DNA as faithful reflections of long-terminal repeat retroelement structure	21
Genome-wide identification of bZIP transcription factor genes related to starch synthesis in barley (Hordeum vulgare L.)	19
Asp/ASPM phospho-regulation throughout the cell cycle	16
Genome Publication Awards 2021	13
Linking the spatial and genomic structure of adaptive potential for conservation management: a review	13
The plastome of ArcticOxytropis arctobia(Fabaceae) is significantly different from that ofO. splendensand other related species	13
Single-cross prediction with imputed multi-omic data: A case study in rapeseed	12
Genetic diversity of Asian and European common wheat lines assessed by fluorescence in situ hybridization	11
Genome assembly, analysis, and mining of Kocuria flava NIO_001: a thiopeptide antibiotic synthesizing bacterium isolated from marine sponge	10
Comparative analysis of transposable elements dynamics in fish with different sex chromosome systems	10
Whole genome sequencing and analysis of benzo(a)pyrene-degrading bacteria Bacillus cereus M72-4	10
Meta-analyses of the global multilocus genotypes of the human pathogen Campylobacter jejuni	10
Differential DNA methylation analysis reveals key genes in Chinese Qingyu and Landrace pigs	10
Cannabis, the multibillion dollar plant that no genebank wanted	9
Reduced representation bisulfite sequencing (RRBS) analysis reveals variation in distribution and levels of DNA methylation in white birch (Betula papyrifera) exposed to nickel	9
Molecular characterization and chromosomal distribution of <i>Tc1/mariner</i> transposons in <i>Boana </i>species (Anura, Hylidae)	8
Karyotype structure and cytogenetic markers of Amoimyrmex bruchi and Amoimyrmex silvestrii: contribution to understanding leaf-cutting ant relationships	8
Genomics-based taxonomy to clarify cannabis classification	8
Evidence for hexasomic inheritance in Chrysanthemum morifolium Ramat. based on analysis of EST-SSR markers	8
Aeromonas salmonicida isolates from Canada demonstrate wide distribution and clustering among mesophilic strains	8
Identification of adulteration in the market samples of saffron using morphology, HPLC, HPTLC, and DNA barcoding methods	8
Chloroplast genome of Ecbolium viride (Forssk.) Alston: plastome evolution and phylogenomics of Justiceae (Acanthaceae, Acanthoideae)	8
Genes and proteins associated with ribeye area and meat tenderness in a commercial Nellore cattle population	8

Introgressed DNA within a Zea mays near-isogenic line displays lower levels of 24nt sRNA expression than the homologous region from the recurrent parent	7
DNA at the whim of the water: environmental DNA as a course-based undergraduate research experience	7
Detection of polymorphisms in the prion-like protein Doppel (PRND) gene in Jeju black cattle	7
Alfalfa transcriptome profiling provides insight into miR156-mediated molecular mechanisms of heat stress tolerance	7
Paenibacillus terrae NK3-4 regulates the transcription of growth-related and stress resistance-related genes in rice	6
Heat shock responsive genes in Brassicaceae: genome-wide identification, phylogeny, and evolutionary associations within and between genera	6
Genome organization of major tandem repeats and their specificity for heterochromatin of macro- and microchromosomes in Japanese quail	6
Microbiomes of willow-galling sawflies: effects of host plant, gall type, and phylogeny on community structure and function	6
Transposable element landscapes illuminate past evolutionary events in the endangered fern Vandenboschia speciosa	6
Pangenomic analysis of three putative hydrocarbon degrading genera <i>Limnohabitans</i>, <i>Aquabacterium</i>, and <i>Novosphingobium</i> collected from freshwater	6
Lack of variation in nuclear DNA content in avian muscle	6
Genetic insights: integrating DNA barcoding with taxonomy in the study of Baccaurea (Phyllanthaceae)	6
First insights into the satellitomes and new evidence for the absence of canonical insect telomere in the Neuroptera order	6
The filamins of Drosophila	6
Development and application of whole-chromosome painting of chromosomes 7A and 8A of Arachis duranensis based on chromosome-specific single-copy oligonucleotides	5
An endogenous retrovirus presumed to have been endogenized or relocated recently in a marsupial, the red-necked wallaby	5
Analysis of the winter oilseed rape recombination landscape suggests maternal–paternal bias	5
Structure and genetic diversity of Canadian Maritimes wild hops	5
AVITI as an alternative to Illumina for low-cost genome-wide genotyping	5
Adjusting extracellular pH to prevent entry of SARS-CoV-2 into human cells	5
Whole-genome comparative analysis reveals genetic mechanisms of disease resistance and heat tolerance of tropicalBos indicuscattle breeds	5
Evolutionary speed of proteins in the genus Staphylococcus: a focus on proteins involved in natural competence	5
Fine mapping of a major QTL qPA7-1 for low hydrocyanic acid content in sorghum–sudangrass hybrid	5
Frequency of cytosine methylation in the adjacent regions of soybean retrotransposon SORE-1 depends on chromosomal location	5
Genes influencing deposition of melanin in breast muscle of the Xuefeng black bone chicken based on bioinformatic analysis	5
Using telomeric length measurements and methylation to understand the karyotype diversification of Ctenomys minutus (a small fossorial mammal)	5
Environmental drivers behind the genetic differentiation in mountain chickadees (Poecile gambeli)	4
Taxonomic classification of the bacterial endosymbiont Wolbachia based on next-generation sequencing: is there molecular evidence for its presence in tardigrades?	4
Development of EST-SSR markers in Bergenia ciliata using de novo transcriptome sequencing	4
Satellite DNAs, heterochromatin, and sex chromosomes of the wattled jacana (Charadriiformes; Jacanidae): a species with highly rearranged karyotype	4
Comparative genome analysis ofPasteurella multocidastrains of porcine origin	4
Identification of alternative splicing and RNA-binding proteins involved in myocardial ischemia–reperfusion injury	4
Identification and characterization of heat-responsive microRNAs at the booting stage in two rice varieties, 9311 and Nagina 22	4
Functional analysis of co-expression networks of zebrafish ace2 reveals enrichment of pathways associated with development and disease	4
Gene regulation supporting sociality shared across lineages and variation in complexity	4
Candidate genes validation for intramuscular fat content of Nellore Cattle	4
Transcriptome profiling of differentially expressed genes of male and female inflorescences in spinach (Spinacia oleracea L.)	4
Specific amino acid changes correlate with pathogenic flavobacteria	4
Full-length transcriptome analysis and identification of genes involved in asarinin and aristolochic acid biosynthesis in medicinal plant Asarum sieboldii	4