Proteins-Structure Function and Bioinformatics

Papers
(The H4-Index of Proteins-Structure Function and Bioinformatics is 28. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-10-01 to 2025-10-01.)
ArticleCitations
Issue Information ‐ Forthcoming455
357
Functional characterization of a hypothetical protein (TTHA1873) from Thermus thermophilus179
Analyzing the cation‐aromatic interactions in proteins: Cation‐aromatic database V2.0174
SARS‐CoV‐2 neutralizing antibody epitopes are overlapping and highly mutated which raises the chances of escape variants and requires development of broadly reactive vaccines97
Unraveling the Structural Basis of Biased Agonism in the β2‐Adrenergic Receptor Through Molecular Dynamics Simulations96
Application of AlphaFold models in evaluating ligandable cysteines across E3 ligases70
Comparative analysis of permanent and transient domain–domain interactions in multi‐domain proteins66
iNucRes‐ASSH: Identifying nucleic acid‐binding residues in proteins by using self‐attention‐based structure‐sequence hybrid neural network66
Protein structuromics: A new method for protein structure–function crosstalk in glioma56
Order/Disorder Transitions Upon Protein Binding: A Unifying Perspective53
Multiscale MD simulations of wild‐type and sickle hemoglobin aggregation52
rrQNet: Protein contact map quality estimation by deep evolutionary reconciliation49
New simulation insights on the structural transition mechanism of bovine rhodopsin activation47
Molecular dynamics studies of CED‐4/CED‐9/EGL‐1 ternary complex reveal CED‐4 release mechanism in the linear apoptotic pathway of Caenorhabditis ele40
Protein‐Ligand Structure and Affinity Prediction in CASP16 Using a Geometric Deep Learning Ensemble and Flow Matching38
Development of a Novel Method for Representing 3D Structures of Nucleotides Using the Concept of the TSR Algorithm and Evaluation of the Method Through Studying Specific Interactions Between DNAs and 37
Oxygen‐insensitive nitroreductase E. coliNfsA, but not NfsB, is inhibited by fumarate34
Issue Information ‐ Table of Content33
Crystal structure of GTP‐dependent dephospho‐coenzyme A kinase from the hyperthermophilic archaeon, Thermococcus kodakarensis32
Issue Information ‐ Forthcoming32
Issue Information ‐ Table of Content32
Tyrosine 288 in the extracellular domain of the human P2X7 receptor is critical for receptor function revealed by structural modeling and site‐directed mutagenesis31
Thermodynamic consequences of stapling side‐chains on a peptide ligand using a lactam‐bridge: A theoretical study on anti‐angiogenic peptides targeting VEGF31
Fusion of two unrelated protein domains in a chimera protein and its 3D prediction: Justification of the x‐ray reference structures as a prediction benchmark30
In Silico Characterization of Bromo‐DragonFLY Binding to the 5‐HT2A Receptor: Molecular Insights Into a Potent Designer Psychedelic29
Enhancing RNA 3D Structure Prediction in CASP16: Integrating Physics‐Based Modeling With Machine Learning for Improved Predictions29
An Overview of Property, Design, and Functionality of Linkers for Fusion Protein Construction28
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