Virus Genes

Article	Citations
Complete genome sequence of malva-associated soymovirus 1: a novel virus infecting common mallow	62
Correction: First reports of several viruses and a viroid including a novel vitivirus in Japan, found through virome analysis of bulk grape genetic resources	59
Correction to: Molecular identification of Betacoronavirus in bats from Sardinia (Italy): first detection and phylogeny	29
Immune response induced by recombinant pres2/S-protein and a pres2-S-protein fused with a core 18-27 antigen fragment of hepatitis B virus compared to conventional HBV vaccine	26
Characterization of the functional domains of nuclear shuttle protein (NSP) of Indian cassava mosaic virus using green fluorescent protein as reporter	25
The genetic and biological characterization of the first avian paramyxovirus serotype 14 isolated from chicken in China	21
The H5N1-NS1 protein affects the host cell cycle and apoptosis through interaction with the host lncRNA PIK3CD-AS2	20
Antiviral siRNA delivered using attenuated, anthrax toxin protects cells from the cytopathic effects of Zika virus	17
MiR-339-5p inhibits replication of porcine reproductive and respiratory syndrome virus by targeting viral gene regions	16
Bioinformatic identification of monkeypox virus phylogenetic gene trees that are representative of its whole-genome phylogenetic tree	15
Aborted infection of human sodium taurocholate cotransporting polypeptide (hNTCP) expressing woodchuck hepatocytes with hepatitis B virus (HBV)	14
Genome sequence analysis of H7N3 subtype avian influenza virus originated from wild birds and its potential infectivity in mice	14
New lytic and new temperate Staphylococcus hyicus phages	14
Domestic cat hepadnavirus genotype B is present in Southern Brazil	14
Comparative genomics and evolutionary analysis of dengue virus strains circulating in Pakistan	13
Molecular characterization of a novel variant of infectious bronchitis virus from field outbreaks in backyard chicken population of North East India	13
Complete genome sequence analysis and biological characteristics of Newcastle disease viruses from different hosts in China	12
Characterization of two novel fusariviruses co-infecting a single isolate of phytopathogenic fungus Botrytis cinerea	12
First detection and diversity of astroviruses in wild migratory birds of Sakhalin Island, North Pacific	12
Nuclear respiratory factor 1 promotes the progression of EBV-associated gastric cancer and maintains EBV latent infection	12
A novel one-step amplification refractory mutation system PCR (ARMS-PCR) for differentiation of canine parvovirus-2 variants	11
Co-circulation of two Mumps virus genotypes in Assam, India	11
Lineage and sublineage analysis of human papillomavirus types 51 and 59 in Iranian women	11
Sequence analysis of the Spike, RNA-dependent RNA polymerase, and protease genes reveals a distinct evolutionary pattern of SARS-CoV-2 variants circulating in Yogyakarta and Central Java provinces, In	11
Characterization of a breakthrough vaccine escape strain associated with overt hepatitis B virus infection	11

The Citrus yellow mosaic badnavirus ORFI functions as a RNA-silencing suppressor	10
Mutations in the S gene of hepatitis B virus in three generations of patients with chronic hepatitis B	10
Genotypic characterization of Japanese encephalitis virus circulating in swine population of India: Genotype-III still in dominance	10
Gushan virus: a newly discovered virus found in mosquitoes of Shandong, China	10
Exploration of plant transcriptomes reveals five putative novel poleroviruses and an enamovirus	10
Aedes aegypti Totivirus identified in mosquitoes in the Brazilian Amazon region	10
Whole genome sequencing and evolution analyses of Human metapneumovirus	9
Transient expression analysis of promoters of okra enation leaf curl virus in Nicotiana benthamiana, cotton and okra plants	9
Characterization and genomic analysis of a novel bacteriophage BUCT_49532 lysing Klebsiella pneumoniae	9
RNA sequencing of avian paramyxovirus (Paramyxoviridae, Avulavirinae) isolates from wild mallards in Belgium, 2021: complete genomes and coinfections	8
Pan-serotype reverse transcription loop-mediated isothermal amplification (RT-LAMP) assay targeting 2B-NSP coding region for colorimetric detection of foot-and-mouth disease virus in clinical samples	8
Distinct interferon response in bat and other mammalian cell lines infected with Pteropine orthoreovirus	8
Correction to: Characterization of the first Rubus yellow net virus genome from blackberry	8
Phylogenetic and evolutionary analysis of foot-and-mouth disease virus A/ASIA/Sea-97 lineage	8
The genome evolution of Marek’s disease viruses in chickens and turkeys in China	8
Isolation, characterization, and genomic analysis of vB_PaeS_TUMS_P81, a lytic bacteriophage against Pseudomonas aeruginosa	8
Characterization of Phietavirus Henu 2 in the virome of individuals with acute gastroenteritis	7
Molecular characterization and genetic analysis of highly pathogenic H5N1 clade 2.3.4.4b in seagulls from Dukan Lake, Iraq	7
Increased virulence of a novel reassortant H1N3 avian influenza virus in mice as a result of adaptive amino acid substitutions	7
Complete genome sequence of Xanthomonas phage M29, a new member of Foxunavirus isolated in the Czech Republic	7
Whole genome sequencing and genomic characterization of a DS-1-like G2P[4] group A rotavirus in Japan	7
Isolation and genomic characterization of a cypovirus from Clanis bilineata	7
VP7, VP4, and NSP4 genes of species a rotaviruses isolated from sewage in Nigeria, 2014/2015: partial sequence characterization and biophysical analysis of NSP4 (enterotoxin)	7
H3K4me3 histone modification in baculovirus-infected silkworm cells	7
Phylogenetic analysis of porcine reproductive and respiratory syndrome virus in Vietnam, 2021	7
Molecular and phylogenetic analysis of influenza A and B viruses circulating in Sri Lanka following the COVID-19 pandemic	7
Leucoma salicis nucleopolyhedrovirus (LesaNPV) genome sequence shed new light on the origin of the Alphabaculovirus orpseudotsugatae species	6
The complete genomic sequence of Magnaporthe oryzae polymycovirus 1	6
Reverse transcription recombinase-aided amplification assay for avian influenza virus	6
The complete genome of equid herpesvirus-1 (EHV-1) field isolates from Argentina reveals an interspecific recombinant strain	6
Detectable episodic positive selection in the virion strand a-strain Maize streak virus genes may have a role in its host adaptation	6
Duck sewage source coliphage P762 can lyse STEC and APEC	6
Hantavirus Brno loanvirus is highly specific to the common noctule bat (Nyctalus noctula) and widespread in Central Europe	6
SCD1 inhibits HBV replication by regulating autophagy under high lipid conditions	6
Whole-genome characterization of avian picornaviruses from diarrheic broiler chickens co-infected with multiple picornaviruses in Iran	6
Characterization of two novel reassortant bluetongue virus serotype 1 strains isolated from farmed white-tailed deer (Odocoileus virginianus) in Florida, USA	6
Long non-coding RNA C1RL-AS1 aggravates influenza A virus pneumonia through miR-16-5p/LAMP3	6
Genome characterization of fig umbra-like virus	5
Characterization of the first Rubus yellow net virus genome from blackberry	5
Expression of F1L, a vaccinia virus H3L transmembrane protein analogue of orf virus, and its successful purification as a diagnostic antigen	5
Antibacterial effects of single phage and phage cocktail against multidrug-resistant Klebsiella pneumoniae isolated from diabetic foot ulcer	5
A virus from Aspergillus cibarius with features of alpha- and betachrysoviruses	5
Genetic analysis of human parainfluenza type 2 virus in Riyadh, Saudi Arabia	5
Shrimp classification for white spot syndrome detection through enhanced gated recurrent unit-based wild geese migration optimization algorithm	5
The arrival of highly pathogenic avian influenza viruses H5N8 in Iran through two windows, 2016	5
Metagenomic sequencing determines complete infectious bronchitis virus (avian Gammacoronavirus) vaccine strain genomes and associated viromes in chicken clinical samples	5
Muramidase, nuclease, or hypothetical protein genes intervene between paired genes encoding DNA packaging terminase and portal proteins in Wolbachia phages and prophages	5
Correction: The complete genomic sequence of Magnaporthe oryzae polymycovirus 1	5
Genetic characterisation of the influenza viruses circulating in Bulgaria during the 2019–2020 winter season	5
Characterization and genome analysis of Klebsiella phages with lytic activity against Klebsiella pneumoniae	5

Foreign gene expression attenuates a virulent Newcastle disease virus in chickens	5
Phylogenetic and diversity analyses revealed that leek yellow stripe virus population consists of three types: S, L, and N	4
Correction to: Complete genome sequences of infectious spleen and kidney necrosis virus isolated from farmed albino rainbow sharks Epalzeorhynchos frenatum in the United States	4
Genetic characteristics of a novel HIV-1 recombinant lineage (CRF103_01B) and its prevalence in northern China	4
Phylogenetic analysis and molecular genetic characteristics of West Nile virus lineage 2 isolates circulating in the Russian Federation	4
Effect of HDAC9-induced deacetylation of glycolysis-related GAPDH lysine 219 on rotavirus replication in rotavirus-infected Caco-2 cells	4
Characterization, phylogeny and recombination of Rhynchosia yellow mosaic virus infecting Rhynchosia minima, a wild relative of pigeonpea (Cajanus cajan) from India	4
Characterization of DNA methylation and promoter activity of long terminal repeat elements of feline endogenous retrovirus RDRS C2a	4
The virome of the white-winged vampire bat Diaemus youngi is rich in circular DNA viruses	4
Comparative genomics of the Neodiprion sertifer nucleopolyhedrovirus from Turkey with the fewest ORFs among baculoviruses	4
Establishment and application of a duplex fluorescent quantitative PCR assay for H9N2 subtype avian influenza virus and infectious bronchitis virus	4
Enhancement of bactericidal effects of bacteriophage and gentamicin combination regimen against Staphylococcus aureus and Pseudomonas aeruginosa strains in a mice diabetic wound model	4
G1-like PB2 gene improves virus replication and competitive advantage of H9N2 virus	4
Eukaryotic initiating factor eIF4E is targeted by EBV-encoded miR-BART11-3p and regulates cell cycle and apoptosis in EBV-associated gastric carcinoma	4
Global population dynamics and evolutionary selection in classical swine fever virus complete genomes: insights from Bayesian coalescent analysis	4
Prevalence of Epstein-Barr virus and JC virus in tissue samples of gastric cancer, non-malignant, and controls by polymerase chain reaction in northwest Iran	4
One-step SYBR green-based real-time RT-PCR assay for detection of foot-and-mouth disease virus circulating in India	4
Molecular characterization of human astrovirus infection in children under 5 years of age with acute gastroenteritis in Tehran, Iran, 2021–2022: co-infection with rotavirus	4
Molecular characterization and comparison of tomato zonate spot virus isolated in Japan and China	4
Pseudorabies virus as a zoonosis: scientific and public health implications	3
Epstein–Barr virus miR-BART4-3p regulates cell proliferation, apoptosis, and migration by targeting AXL in gastric carcinoma	3
Small RNA sequencing analysis reveals regulation of microRNA expression in Madin–Darby canine kidney epithelial cells infected with Canid alphaherpesvirus 1	3
The potential emerging role of piRNA/PIWI complex in virus infection	3
Identification of monoclonal antibody targeting epitope on p72 trimeric spike of African swine fever virus	3
Structure and function of the parvoviral NS1 protein: a review	3
Exploring the role of YBX3 in PEDV infection through the utilization of YBX3 knockout and overexpression cell lines	3
Characterization of the proteins encoded by a recently emerged cotton-infecting Polerovirus	3
Diversity of viroids infecting grapevines in the South African Vitis germplasm collection	3
Genome sequence of a Sobemovirus from the feces of Northern Pintail (Anas acuta)	3
AMP-activated kinase regulates porcine reproductive and respiratory syndrome virus infection in vitro	3
Drug-resistant and immune-escape hepatitis B virus mutants, occult hepatitis B infection and coinfections in public hospital patients from Argentina	3
The emergence of novel Iranian variants in sheeppox and goatpox viral envelope proteins with remarkably altered putative binding affinities with the host receptor	3
Spillover of Newcastle disease virus to Himalayan Griffon vulture: a possible food-based transmission	3
Factors influencing the prevalence of acute bee paralysis virus in Apis mellifera and insights into its phylogenetic relationships	3
Study of Hsp90α and Hsp90β role in virus replication using cell lines with Hsp90 gene knockouts	3
Molecular phylodynamics of fowl adenovirus serotype 11 and 8b from inclusion body hepatitis outbreaks	3
Molecular analysis of the env, LTR, and pX regions of bovine leukemia virus in dairy cattle of Türkiye	3
Analysis of SARS-CoV-2 omicron mutations that emerged during long-term replication in a lung cancer xenograft mouse model	2
Correction: Complete genome and molecular characterization of spiranthes mosaic virus 3 from Phlox paniculata	2
Identification and epidemiological analysis of a putative novel hantavirus in Australian flying foxes	2
Trichodysplasia spinulosa polyomavirus small T antigen synergistically modulates S6 protein translation and DNA damage response pathways to shape host cell environment	2
Jojan: a novel virus that lyses Stenotrophomonas maltophilia from dog	2
Molecular phylodynamics of infectious bursal disease viruses	2
Decoding codon usage in human papillomavirus type 59	2
me53 encoded by Autographa californica multiple nucleopolyhedrovirus: from mechanism to function	2
Sensitivity of two SARS-CoV-2 variants with spike protein mutations to neutralising antibodies	2
First detection of the occurrence and study of the genetic diversity of novel putative kirkoviruses in donkey in China	2
Label-free proteomics analysis on the envelope of budded viruses of Bombyx mori nucleopolyhedrovirus harboring differential localized GP64	2
A therapeutic approach for the hepatitis C virus: in silico design of an antisense oligonucleotide-based candidate capsid inhibitor	2
Recent advances in treatment and detection of Rift Valley fever virus: a comprehensive overview	2
Isolation of the novel phage SAP71 and its potential use against Staphylococcus aureus in an atopic dermatitis mouse model	2
RHDV 3C protein antagonizes type I interferon signaling by cleaving interferon promoter stimulated 1 protein	2
Complete genomic sequences and comparative analysis of two Orf virus isolates from Guizhou Province and Jilin Province, China	2
Interaction of influenza A virus NS1 and cytoskeleton scaffolding protein α-actinin 4	2
Characterization and phylogenetic analysis of bovine gammaherpesvirus 4 isolated in China, 2022	2
Complete genome sequences of infectious spleen and kidney necrosis virus isolated from farmed albino rainbow sharks Epalzeorhynchos frenatum in the United States	2
Reintroduction of highly pathogenic avian influenza A H7N9 virus in southwestern China	2
Construction and characterisation of glycoprotein E and glycoprotein I deficient mutants of Australian strains of infectious laryngotracheitis virus using traditional and CRISPR/Cas9-assisted homologo	2
Molecular characterization of picobirnaviruses in small ruminants with diarrhea in Turkey	2
Molecular functions of HAX1 during disease progress	2
Guinea pig herpes like virus is a gamma herpesvirus	2
Dispersion and diversification of Lyssavirus rabies transmitted from haematophagous bats Desmodus rotundus: a phylogeographical study	2
Porcine epidemic diarrhea virus E protein induces unfolded protein response through activating both PERK and ATF6 rather than IRE1 signaling pathway	2
Detection and typing of dengue virus by one-step RT-PCR-based high-resolution melting assay	2
Construction and efficacy of a recombinant QX-like infectious bronchitis virus vaccine strain	2
A SARS-CoV-2 mutant from B.1.258 lineage with ∆H69/∆V70 deletion in the Spike protein circulating in Central Europe in the fall 2020	2
Complete genome and molecular characterization of a putative novel citrivirus from Rudbeckia sp.	2
The full genome characterization of avian encephalomyelitis virus, Iran: a vertical transmission case	2
Detection and molecular epidemiology of canine parvovirus and identification of highly pathogenic CPV-2c isolates from Shandong, China	2
First report of the whole-genome sequence analysis of avian rotavirus A from Japanese chickens	2
Aquaporin-3 is down-regulated by LMP1 in nasopharyngeal carcinoma cells to regulate cell migration and affect EBV latent infection	2
Development and application of a multiplex qPCR assay for the detection of duck circovirus, duck Tembusu virus, Muscovy duck reovirus, and new duck reovirus	2
A genetically novel avian Hepatitis E virus in China	2
Pooled screening for endogenous HHV-6 in subjects with coronary artery disease	2
The global asymptotical stability of pseudorabies model with age-structure	1
Complete genome organization and characterization of Hippeastrum latent virus	1
SARS coronavirus outbreaks past and present—a comparative analysis of SARS-CoV-2 and its predecessors	1
Molecular epidemiology and phylogenetic analysis of human respiratory syncytial virus type B in Riyadh, Saudi Arabia	1
Potentials as biomarker and therapeutic target of upregulated long non-coding RNA HLA-F antisense RNA 1 in hepatitis B virus-associated hepatocellular carcinoma	1
Establishment of reverse genetics for genotype VII Newcastle disease virus and altering the cell tropism by inserting TMPRSS2 into the viral genome	1

Correction to: Complete genome sequence of a recombinant isolate of yambean mosaic virus from Canavalia ensiformis	1
Correction: Whole genome sequencing and annotation of a lysogenic phage vB_EcoP_DE5 isolated from donkey-derived Escherichia coli	1
White yam (Dioscorea rotundata) plants exhibiting virus-like symptoms are co-infected with a new potyvirus and a new crinivirus in Ethiopia	1
First reports of several viruses and a viroid including a novel vitivirus in Japan, found through virome analysis of bulk grape genetic resources	1
Effect of thymidine kinase-deficiency (∆ORF38) on neuropathogenicity of equine herpesvirus-1 in the mouse model and expression of neighboring genes	1
Identification and complete genome sequencing of a divergent olive virus T isolate and an olive leaf yellowing-associated virus isolate naturally infecting olive trees in Greece	1
Alphanudiviral segments found in transcriptomes of the two-spotted spider mite, Tetranychus urticae (Acari: Tetranychidae)	1
Complete genome and molecular characterization of spiranthes mosaic virus 3 from Phlox paniculata	1
Identification and characterization of mycoviruses in transcriptomes from the fungal family ceratocystidaceae	1
Hyperactivation of p53 using CRISPRa kills human papillomavirus-driven cervical cancer cells	1
MiR-BART1-3p and BART18-5p inhibit cell migration, proliferation and activate autophagy in Epstein-Barr virus-associated gastric cancer by targeting erythropoietin-producing human hepatocellular 2	1
Molecular detection of monkeypox and related viruses: challenges and opportunities	1
Donkey-like kirkovirus is associated with diarrhea in piglets	1
P4 protein of an Indian isolate of rice tungro bacilliform virus modulates gene silencing	1
Nucleotide at position 66 of NS2A in Japanese encephalitis virus is associated with the virulence and proliferation of virus	1
Identification and complete genome sequencing of a novel betapartitivirus naturally infecting the mycorrhizal desert truffle Terfezia claveryi	1
Phylogenetics of tobacco rattle virus isolates from potato (Solanum tuberosum L.) in the USA: a multi-gene approach to evolutionary lineage	1
CHIKV strains Brazil (wt) and Ross (lab-adapted) differ with regard to cell host range and antiviral sensitivity and show CPE in human glioblastoma cell lines U138 and U251	1
The conserved cysteines at position 18, 36, and 49 of Autographa californica multiple nucleopolyhedrovirus VP39 are essential for virus replication	1
Phylogenetic analyses of the spread of Clade I MPOX in African and non-African nations	1
Lumpy skin disease: a systematic review of mode of transmission, risk of emergence, and risk entry pathways	1
Subregional origins of emerging SARS-CoV-2 variants during the second pandemic wave in Côte d’Ivoire	1
The isolation and serotyping of foot-and-mouth disease virus in Iran during 2019–2022	1
Do HBsAg subdeterminants matter for vaccination against hepatitis B?	1
Unraveling potential gene biomarkers for dengue infection through RNA sequencing	1
Molecular characterization and drug resistance pattern in pol gene of HIV-1 sub-subtypes circulating in Lahore, Pakistan	1
Correction: Genomic analysis of Varicella zoster virus strains during an outbreak with atypical clinical presentations in Biswanath district of Assam, India	1
Approaches to identify canine distemper virus with neurological symptoms on the basis of molecular characterization of hemagglutinin and fusion genes	1
Screening of candidate genes associated with high titer production of oncolytic measles virus based on systems biology approach	1
Molecular characteristics and pathogenicity of an equid alphaherpesvirus 1 strain isolated in China	1
Norovirus GI.5 [P4]: first report of the rare norovirus recombinant variant in Northeastern Mexico and its global epidemiological context	1
A new isolate of mungbean yellow mosaic India virus in Vigna mungo L. reported from a Dayalbagh field, Agra	1
Complete genome sequence analysis, morphology and structural protein identification of two Bacillus subtilis phages, BSTP4 and BSTP6, which may form a new species in the genus Salasvirus	1
Screening and identification of specific cluster miRNAs in N2a cells infected by H7N9 virus	1
Detection of four isomers of the human cytomegalovirus genome using nanopore long-read sequencing	1
Complete genome sequence of a recombinant isolate of yambean mosaic virus from Canavalia ensiformis	1
Characterization of a reassortant H11N9 subtype avian influenza virus isolated from spot-billed duck in China	1
Prevalence and genetic diversity of HTLV-1 among blood donors in Jiroft, Iran: a comprehensive study	1
Attenuated African swine fever virus through serial passaging of viruses in cell culture: a brief review on the knowledge gathered during 60 years of research	1
Identification of a phage-derived depolymerase specific for KL64 capsule of Klebsiella pneumoniae and its anti-biofilm effect	1
Transcriptome sequencing of LMP2A-transfected gastric cancer cells identifies potential biomarkers in EBV-associated gastric cancer	1
SOX9 negatively regulates the RLR antiviral signaling by targeting MAVS	1
Isolation and characterization of a novel lytic bacteriophage vB_Efm_LG62 infecting Enterococcus faecium	1
The complete genome sequence of an alphabaculovirus from the brown tussock moth, Olene mendosa Hübner, expands our knowledge of lymantriine baculovirus diversity and evolution	1