Virus Genes

Article	Citations
Complete genome sequence of malva-associated soymovirus 1: a novel virus infecting common mallow	65
Correction: First reports of several viruses and a viroid including a novel vitivirus in Japan, found through virome analysis of bulk grape genetic resources	62
Immune response induced by recombinant pres2/S-protein and a pres2-S-protein fused with a core 18-27 antigen fragment of hepatitis B virus compared to conventional HBV vaccine	30
Characterization of the functional domains of nuclear shuttle protein (NSP) of Indian cassava mosaic virus using green fluorescent protein as reporter	27
The genetic and biological characterization of the first avian paramyxovirus serotype 14 isolated from chicken in China	21
The H5N1-NS1 protein affects the host cell cycle and apoptosis through interaction with the host lncRNA PIK3CD-AS2	19
Antiviral siRNA delivered using attenuated, anthrax toxin protects cells from the cytopathic effects of Zika virus	17
Bioinformatic identification of monkeypox virus phylogenetic gene trees that are representative of its whole-genome phylogenetic tree	15
Aborted infection of human sodium taurocholate cotransporting polypeptide (hNTCP) expressing woodchuck hepatocytes with hepatitis B virus (HBV)	14
MiR-339-5p inhibits replication of porcine reproductive and respiratory syndrome virus by targeting viral gene regions	14
Genome sequence analysis of H7N3 subtype avian influenza virus originated from wild birds and its potential infectivity in mice	14
Comparative genomics and evolutionary analysis of dengue virus strains circulating in Pakistan	14
New lytic and new temperate Staphylococcus hyicus phages	14
Domestic cat hepadnavirus genotype B is present in Southern Brazil	14
First detection and diversity of astroviruses in wild migratory birds of Sakhalin Island, North Pacific	13
Molecular characterization of a novel variant of infectious bronchitis virus from field outbreaks in backyard chicken population of North East India	13
Nuclear respiratory factor 1 promotes the progression of EBV-associated gastric cancer and maintains EBV latent infection	13
Complete genome sequence analysis and biological characteristics of Newcastle disease viruses from different hosts in China	12
Characterization of two novel fusariviruses co-infecting a single isolate of phytopathogenic fungus Botrytis cinerea	12
Co-circulation of two Mumps virus genotypes in Assam, India	11
Sequence analysis of the Spike, RNA-dependent RNA polymerase, and protease genes reveals a distinct evolutionary pattern of SARS-CoV-2 variants circulating in Yogyakarta and Central Java provinces, In	11
Lineage and sublineage analysis of human papillomavirus types 51 and 59 in Iranian women	11
Genotypic characterization of Japanese encephalitis virus circulating in swine population of India: Genotype-III still in dominance	10
Mutations in the S gene of hepatitis B virus in three generations of patients with chronic hepatitis B	10
Characterization of a breakthrough vaccine escape strain associated with overt hepatitis B virus infection	10

Gushan virus: a newly discovered virus found in mosquitoes of Shandong, China	10
The Citrus yellow mosaic badnavirus ORFI functions as a RNA-silencing suppressor	10
Aedes aegypti Totivirus identified in mosquitoes in the Brazilian Amazon region	10
Whole genome sequencing and evolution analyses of Human metapneumovirus	9
Characterization and genomic analysis of a novel bacteriophage BUCT_49532 lysing Klebsiella pneumoniae	9
Transient expression analysis of promoters of okra enation leaf curl virus in Nicotiana benthamiana, cotton and okra plants	9
Exploration of plant transcriptomes reveals five putative novel poleroviruses and an enamovirus	9
Pan-serotype reverse transcription loop-mediated isothermal amplification (RT-LAMP) assay targeting 2B-NSP coding region for colorimetric detection of foot-and-mouth disease virus in clinical samples	8
Correction to: Characterization of the first Rubus yellow net virus genome from blackberry	8
Complete genome sequence of Xanthomonas phage M29, a new member of Foxunavirus isolated in the Czech Republic	8
RNA sequencing of avian paramyxovirus (Paramyxoviridae, Avulavirinae) isolates from wild mallards in Belgium, 2021: complete genomes and coinfections	8
Isolation and genomic characterization of a cypovirus from Clanis bilineata	8
VP7, VP4, and NSP4 genes of species a rotaviruses isolated from sewage in Nigeria, 2014/2015: partial sequence characterization and biophysical analysis of NSP4 (enterotoxin)	8
Distinct interferon response in bat and other mammalian cell lines infected with Pteropine orthoreovirus	8
Increased virulence of a novel reassortant H1N3 avian influenza virus in mice as a result of adaptive amino acid substitutions	8
Phylogenetic analysis of porcine reproductive and respiratory syndrome virus in Vietnam, 2021	8
Characterization of Phietavirus Henu 2 in the virome of individuals with acute gastroenteritis	7
Molecular characterization and genetic analysis of highly pathogenic H5N1 clade 2.3.4.4b in seagulls from Dukan Lake, Iraq	7
Whole-genome characterization of avian picornaviruses from diarrheic broiler chickens co-infected with multiple picornaviruses in Iran	7
Molecular and phylogenetic analysis of influenza A and B viruses circulating in Sri Lanka following the COVID-19 pandemic	7
The genome evolution of Marek’s disease viruses in chickens and turkeys in China	7
Whole genome sequencing and genomic characterization of a DS-1-like G2P[4] group A rotavirus in Japan	7
Isolation, characterization, and genomic analysis of vB_PaeS_TUMS_P81, a lytic bacteriophage against Pseudomonas aeruginosa	7
Leucoma salicis nucleopolyhedrovirus (LesaNPV) genome sequence shed new light on the origin of the Alphabaculovirus orpseudotsugatae species	7
Long non-coding RNA C1RL-AS1 aggravates influenza A virus pneumonia through miR-16-5p/LAMP3	6
Muramidase, nuclease, or hypothetical protein genes intervene between paired genes encoding DNA packaging terminase and portal proteins in Wolbachia phages and prophages	6
The complete genomic sequence of Magnaporthe oryzae polymycovirus 1	6
Reverse transcription recombinase-aided amplification assay for avian influenza virus	6
The complete genome of equid herpesvirus-1 (EHV-1) field isolates from Argentina reveals an interspecific recombinant strain	6
Genome characterization of fig umbra-like virus	6
Cucumber mosaic virus infection does not increase the translocation of the green fluorescent protein from GM rootstock to non-GM scion in transgrafted plants	6
Detectable episodic positive selection in the virion strand a-strain Maize streak virus genes may have a role in its host adaptation	6
SCD1 inhibits HBV replication by regulating autophagy under high lipid conditions	6
A virus from Aspergillus cibarius with features of alpha- and betachrysoviruses	6
Hantavirus Brno loanvirus is highly specific to the common noctule bat (Nyctalus noctula) and widespread in Central Europe	6
Duck sewage source coliphage P762 can lyse STEC and APEC	6
Characterization of two novel reassortant bluetongue virus serotype 1 strains isolated from farmed white-tailed deer (Odocoileus virginianus) in Florida, USA	6
Association of RBD mutations with COVID-19 disease severity in the Iranian population	5
Shrimp classification for white spot syndrome detection through enhanced gated recurrent unit-based wild geese migration optimization algorithm	5
Correction: The complete genomic sequence of Magnaporthe oryzae polymycovirus 1	5
Transcriptome analysis of Spodoptera RNA-seq data unveils new viruses within the family Rhabdoviridae	5
The arrival of highly pathogenic avian influenza viruses H5N8 in Iran through two windows, 2016	5
Genetic analysis of human parainfluenza type 2 virus in Riyadh, Saudi Arabia	5
Foreign gene expression attenuates a virulent Newcastle disease virus in chickens	5
Phylogenetic analysis and molecular genetic characteristics of West Nile virus lineage 2 isolates circulating in the Russian Federation	5
Characterization and genome analysis of Klebsiella phages with lytic activity against Klebsiella pneumoniae	5
Characterization of the first Rubus yellow net virus genome from blackberry	5
Expression of F1L, a vaccinia virus H3L transmembrane protein analogue of orf virus, and its successful purification as a diagnostic antigen	5
Antibacterial effects of single phage and phage cocktail against multidrug-resistant Klebsiella pneumoniae isolated from diabetic foot ulcer	5
Metagenomic sequencing determines complete infectious bronchitis virus (avian Gammacoronavirus) vaccine strain genomes and associated viromes in chicken clinical samples	5

The virome of the white-winged vampire bat Diaemus youngi is rich in circular DNA viruses	4
G1-like PB2 gene improves virus replication and competitive advantage of H9N2 virus	4
Characterization of the proteins encoded by a recently emerged cotton-infecting Polerovirus	4
Pseudorabies virus as a zoonosis: scientific and public health implications	4
Genetic characteristics of a novel HIV-1 recombinant lineage (CRF103_01B) and its prevalence in northern China	4
Phylogenetic and diversity analyses revealed that leek yellow stripe virus population consists of three types: S, L, and N	4
Prevalence of Epstein-Barr virus and JC virus in tissue samples of gastric cancer, non-malignant, and controls by polymerase chain reaction in northwest Iran	4
One-step SYBR green-based real-time RT-PCR assay for detection of foot-and-mouth disease virus circulating in India	4
Characterization of DNA methylation and promoter activity of long terminal repeat elements of feline endogenous retrovirus RDRS C2a	4
Spillover of Newcastle disease virus to Himalayan Griffon vulture: a possible food-based transmission	4
Characterization, phylogeny and recombination of Rhynchosia yellow mosaic virus infecting Rhynchosia minima, a wild relative of pigeonpea (Cajanus cajan) from India	4
Comparative genomics of the Neodiprion sertifer nucleopolyhedrovirus from Turkey with the fewest ORFs among baculoviruses	4
Establishment and application of a duplex fluorescent quantitative PCR assay for H9N2 subtype avian influenza virus and infectious bronchitis virus	4
Effect of HDAC9-induced deacetylation of glycolysis-related GAPDH lysine 219 on rotavirus replication in rotavirus-infected Caco-2 cells	4
Molecular characterization and comparison of tomato zonate spot virus isolated in Japan and China	4
Epstein–Barr virus miR-BART4-3p regulates cell proliferation, apoptosis, and migration by targeting AXL in gastric carcinoma	4
Factors influencing the prevalence of acute bee paralysis virus in Apis mellifera and insights into its phylogenetic relationships	4
Molecular characterization of human astrovirus infection in children under 5 years of age with acute gastroenteritis in Tehran, Iran, 2021–2022: co-infection with rotavirus	4
Global population dynamics and evolutionary selection in classical swine fever virus complete genomes: insights from Bayesian coalescent analysis	4
Correction to: Complete genome sequences of infectious spleen and kidney necrosis virus isolated from farmed albino rainbow sharks Epalzeorhynchos frenatum in the United States	4
Enhancement of bactericidal effects of bacteriophage and gentamicin combination regimen against Staphylococcus aureus and Pseudomonas aeruginosa strains in a mice diabetic wound model	3
The emergence of novel Iranian variants in sheeppox and goatpox viral envelope proteins with remarkably altered putative binding affinities with the host receptor	3
Structure and function of the parvoviral NS1 protein: a review	3
Molecular phylodynamics of fowl adenovirus serotype 11 and 8b from inclusion body hepatitis outbreaks	3
Complete genome and molecular characterization of a putative novel citrivirus from Rudbeckia sp.	3
AMP-activated kinase regulates porcine reproductive and respiratory syndrome virus infection in vitro	3
Exploring the role of YBX3 in PEDV infection through the utilization of YBX3 knockout and overexpression cell lines	3
Identification of monoclonal antibody targeting epitope on p72 trimeric spike of African swine fever virus	3
Molecular analysis of the env, LTR, and pX regions of bovine leukemia virus in dairy cattle of Türkiye	3
Interaction of influenza A virus NS1 and cytoskeleton scaffolding protein α-actinin 4	3
Small RNA sequencing analysis reveals regulation of microRNA expression in Madin–Darby canine kidney epithelial cells infected with Canid alphaherpesvirus 1	3
Study of Hsp90α and Hsp90β role in virus replication using cell lines with Hsp90 gene knockouts	3
The potential emerging role of piRNA/PIWI complex in virus infection	3
Genome sequence of a Sobemovirus from the feces of Northern Pintail (Anas acuta)	3
Porcine epidemic diarrhea virus E protein induces unfolded protein response through activating both PERK and ATF6 rather than IRE1 signaling pathway	3
Diversity of viroids infecting grapevines in the South African Vitis germplasm collection	3
Reintroduction of highly pathogenic avian influenza A H7N9 virus in southwestern China	2
Development and application of a real-time fluorescent RAA assay for H9 subtype avian influenza viruses	2
Raising Awareness About Compromised Cell Lines, Better Science Practices, and Accountability	2
Molecular functions of HAX1 during disease progress	2
Recent advances in treatment and detection of Rift Valley fever virus: a comprehensive overview	2
Identification and epidemiological analysis of a putative novel hantavirus in Australian flying foxes	2
RHDV 3C protein antagonizes type I interferon signaling by cleaving interferon promoter stimulated 1 protein	2
Construction and efficacy of a recombinant QX-like infectious bronchitis virus vaccine strain	2
Pooled screening for endogenous HHV-6 in subjects with coronary artery disease	2
Analysis of SARS-CoV-2 omicron mutations that emerged during long-term replication in a lung cancer xenograft mouse model	2
Development and application of a multiplex qPCR assay for the detection of duck circovirus, duck Tembusu virus, Muscovy duck reovirus, and new duck reovirus	2
First report of the whole-genome sequence analysis of avian rotavirus A from Japanese chickens	2
Dispersion and diversification of Lyssavirus rabies transmitted from haematophagous bats Desmodus rotundus: a phylogeographical study	2
Characterization and phylogenetic analysis of bovine gammaherpesvirus 4 isolated in China, 2022	2
Isolation of the novel phage SAP71 and its potential use against Staphylococcus aureus in an atopic dermatitis mouse model	2
Aquaporin-3 is down-regulated by LMP1 in nasopharyngeal carcinoma cells to regulate cell migration and affect EBV latent infection	2
A SARS-CoV-2 mutant from B.1.258 lineage with ∆H69/∆V70 deletion in the Spike protein circulating in Central Europe in the fall 2020	2
Complete genomic sequences and comparative analysis of two Orf virus isolates from Guizhou Province and Jilin Province, China	2
Molecular phylodynamics of infectious bursal disease viruses	2
Jojan: a novel virus that lyses Stenotrophomonas maltophilia from dog	2
A therapeutic approach for the hepatitis C virus: in silico design of an antisense oligonucleotide-based candidate capsid inhibitor	2
SOX9 negatively regulates the RLR antiviral signaling by targeting MAVS	2
Sensitivity of two SARS-CoV-2 variants with spike protein mutations to neutralising antibodies	2
Construction and characterisation of glycoprotein E and glycoprotein I deficient mutants of Australian strains of infectious laryngotracheitis virus using traditional and CRISPR/Cas9-assisted homologo	2
Molecular characterization of picobirnaviruses in small ruminants with diarrhea in Turkey	2
Correction: Complete genome and molecular characterization of spiranthes mosaic virus 3 from Phlox paniculata	2
Label-free proteomics analysis on the envelope of budded viruses of Bombyx mori nucleopolyhedrovirus harboring differential localized GP64	2
Guinea pig herpes like virus is a gamma herpesvirus	2
The full genome characterization of avian encephalomyelitis virus, Iran: a vertical transmission case	2
Detection and typing of dengue virus by one-step RT-PCR-based high-resolution melting assay	2
Trichodysplasia spinulosa polyomavirus small T antigen synergistically modulates S6 protein translation and DNA damage response pathways to shape host cell environment	2
Decoding codon usage in human papillomavirus type 59	2
A genetically novel avian Hepatitis E virus in China	2
Detection and molecular epidemiology of canine parvovirus and identification of highly pathogenic CPV-2c isolates from Shandong, China	2
First detection of the occurrence and study of the genetic diversity of novel putative kirkoviruses in donkey in China	2
Identification and complete genome sequencing of a novel betapartitivirus naturally infecting the mycorrhizal desert truffle Terfezia claveryi	1
Detection of four isomers of the human cytomegalovirus genome using nanopore long-read sequencing	1
The conserved cysteines at position 18, 36, and 49 of Autographa californica multiple nucleopolyhedrovirus VP39 are essential for virus replication	1
A new isolate of mungbean yellow mosaic India virus in Vigna mungo L. reported from a Dayalbagh field, Agra	1
Molecular characterization and drug resistance pattern in pol gene of HIV-1 sub-subtypes circulating in Lahore, Pakistan	1
Isolation and characterization of a novel lytic bacteriophage vB_Efm_LG62 infecting Enterococcus faecium	1
Hyperactivation of p53 using CRISPRa kills human papillomavirus-driven cervical cancer cells	1
The global asymptotical stability of pseudorabies model with age-structure	1
Comparison of HVT-ND recombinant and convection-based Newcastle disease vaccination programs in the protection against the genotype VII NDV challenges: an experimental study	1

Molecular detection of monkeypox and related viruses: challenges and opportunities	1
Establishment of reverse genetics for genotype VII Newcastle disease virus and altering the cell tropism by inserting TMPRSS2 into the viral genome	1
Subregional origins of emerging SARS-CoV-2 variants during the second pandemic wave in Côte d’Ivoire	1
Molecular epidemiology and phylogenetic analysis of human respiratory syncytial virus type B in Riyadh, Saudi Arabia	1
Characterization of a reassortant H11N9 subtype avian influenza virus isolated from spot-billed duck in China	1
Molecular epidemiology and genetic evolution of avian influenza H5N1 subtype in Nigeria, 2006 to 2021	1
Alphanudiviral segments found in transcriptomes of the two-spotted spider mite, Tetranychus urticae (Acari: Tetranychidae)	1
Screening and identification of specific cluster miRNAs in N2a cells infected by H7N9 virus	1
Prevalence and genetic diversity of HTLV-1 among blood donors in Jiroft, Iran: a comprehensive study	1
MiR-BART1-3p and BART18-5p inhibit cell migration, proliferation and activate autophagy in Epstein-Barr virus-associated gastric cancer by targeting erythropoietin-producing human hepatocellular 2	1
White yam (Dioscorea rotundata) plants exhibiting virus-like symptoms are co-infected with a new potyvirus and a new crinivirus in Ethiopia	1
Nucleotide at position 66 of NS2A in Japanese encephalitis virus is associated with the virulence and proliferation of virus	1
Correction to: Complete genome sequence of a recombinant isolate of yambean mosaic virus from Canavalia ensiformis	1
Molecular characteristics and pathogenicity of an equid alphaherpesvirus 1 strain isolated in China	1
P4 protein of an Indian isolate of rice tungro bacilliform virus modulates gene silencing	1
Transcriptome sequencing of LMP2A-transfected gastric cancer cells identifies potential biomarkers in EBV-associated gastric cancer	1
Donkey-like kirkovirus is associated with diarrhea in piglets	1
Molecular characterization and evolutionary analysis of human adenovirus type 55, related to febrile respiratory illness in the South Korean military	1
Unraveling potential gene biomarkers for dengue infection through RNA sequencing	1
Comprehensive analysis of clinical indications and viral strain variants among patients infected with SARS-CoV-2 in Inner Mongolia, China	1
Complete genome organization and characterization of Hippeastrum latent virus	1
Lumpy skin disease: a systematic review of mode of transmission, risk of emergence, and risk entry pathways	1
Attenuated African swine fever virus through serial passaging of viruses in cell culture: a brief review on the knowledge gathered during 60 years of research	1
Advances in the study of LNPs for mRNA delivery and clinical applications	1
Do HBsAg subdeterminants matter for vaccination against hepatitis B?	1
Potentials as biomarker and therapeutic target of upregulated long non-coding RNA HLA-F antisense RNA 1 in hepatitis B virus-associated hepatocellular carcinoma	1
Complete genome and molecular characterization of spiranthes mosaic virus 3 from Phlox paniculata	1
Phylogenetics of tobacco rattle virus isolates from potato (Solanum tuberosum L.) in the USA: a multi-gene approach to evolutionary lineage	1
The isolation and serotyping of foot-and-mouth disease virus in Iran during 2019–2022	1
Correction: Genomic analysis of Varicella zoster virus strains during an outbreak with atypical clinical presentations in Biswanath district of Assam, India	1
Complete genome sequence of a recombinant isolate of yambean mosaic virus from Canavalia ensiformis	1
Correction: Whole genome sequencing and annotation of a lysogenic phage vB_EcoP_DE5 isolated from donkey-derived Escherichia coli	1
Identification and characterization of mycoviruses in transcriptomes from the fungal family ceratocystidaceae	1
The complete genome sequence of an alphabaculovirus from the brown tussock moth, Olene mendosa Hübner, expands our knowledge of lymantriine baculovirus diversity and evolution	1
Phylogenetic analyses of the spread of Clade I MPOX in African and non-African nations	1
Screening of candidate genes associated with high titer production of oncolytic measles virus based on systems biology approach	1
The C-terminus of the tail fiber protein of PB1-like phages is responsible for the host recognition	1
Approaches to identify canine distemper virus with neurological symptoms on the basis of molecular characterization of hemagglutinin and fusion genes	1
Isolation and whole-genome sequence analysis of Balagodu virus in Japan	1
First reports of several viruses and a viroid including a novel vitivirus in Japan, found through virome analysis of bulk grape genetic resources	1
Study on the regulatory mechanism of latent membrane protein 2A on GCNT3 expression in nasopharyngeal carcinoma	1
Identification and complete genome sequencing of a divergent olive virus T isolate and an olive leaf yellowing-associated virus isolate naturally infecting olive trees in Greece	1
Norovirus GI.5 [P4]: first report of the rare norovirus recombinant variant in Northeastern Mexico and its global epidemiological context	1
me53 encoded by Autographa californica multiple nucleopolyhedrovirus: from mechanism to function	1
Genetic characterization of a novel HIV-1 circulating recombinant form (CRF162_cpx) involving CRF01_AE, CRF07_BC and subtype B in Guangdong, China	1
CHIKV strains Brazil (wt) and Ross (lab-adapted) differ with regard to cell host range and antiviral sensitivity and show CPE in human glioblastoma cell lines U138 and U251	1
Complete genome sequence analysis, morphology and structural protein identification of two Bacillus subtilis phages, BSTP4 and BSTP6, which may form a new species in the genus Salasvirus	1
Effect of thymidine kinase-deficiency (∆ORF38) on neuropathogenicity of equine herpesvirus-1 in the mouse model and expression of neighboring genes	1