OOIR: Observatory of International Research

Papers

(The median citation count of Mammalian Genome is 2. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-06-01 to 2025-06-01.)

Article	Citations
Designing libraries for pooled CRISPR functional screens of long noncoding RNAs	66
Unraveling the maternal heritage: identifying the complex origins of indigenous Indian horse and pony breeds through mitochondrial genome analysis	55
Comprehensive analysis reveals the prognostic and immunological role of PSMD13 in hepatocellular carcinoma	46
Standardisation and future of preclinical echocardiography	44
EEF1A1 transcription cofactor gene polymorphism is associated with muscle gene expression and residual feed intake in Nelore cattle	42
Genetics of murine type 2 diabetes and comorbidities	36
Evaluation of genotype imputation using Glimpse tools on low coverage ancient DNA	26
Glycosylated protein-related microenvironmental features in breast cancer are associated with patient prognosis	23
Climate resilience in goats: a comprehensive review of the genetic basis for adaptation to varied climatic conditions	22
Genetic and immune landscape of keratoconus: insights from Mendelian randomization analysis	22
Genomic resources for rhesus macaques (Macaca mulatta)	21
An interaction of inorganic arsenic exposure with body weight and composition on type 2 diabetes indicators in Diversity Outbred mice	21
Fine mapping and candidate gene analysis of a dravet syndrome modifier locus on mouse chromosome 11	20
RETRACTED ARTICLE: CircRNA_0043691 sponges miR-873-3p to promote metastasis of gastric cancer	19
Comparative single-cell analysis of the adult heart and coronary vasculature	18
A deletion containing a CTCF-element in intron 8 of the Bbs7 gene is partially responsible for juvenile obesity in the Berlin Fat Mouse	18
Review on camel genetic diversity: ecological and economic perspectives	18
AgAnimalGenomes: browsers for viewing and manually annotating farm animal genomes	17
Introduction to Mammalian Genome special issue: cardiovascular disease in the Mammalian Genome.	17
IMPC impact on preclinical mouse models	16
Genomic and functional conservation of lncRNAs: lessons from flies	16
EEF1A2 identified as a hub gene associated with the severity of metabolic dysfunction-associated steatotic liver disease	14
RETRACTED ARTICLE: LncRNA TLR8-AS1 suppresses miR-34a maturation in hepatocellular carcinoma to suppress cell proliferation and migration	14
Generation of a humanized mAce2 and a conditional hACE2 mouse models permissive to SARS-COV-2 infection	13
Alpha-synuclein pathology and Parkinson’s disease-related olfactory dysfunctions: an update on preclinical models and therapeutic approaches	13

Of mice and human-specific long noncoding RNAs	13
Introduction to Mammalian Genome Special Issue: Mammalian Genetic Resources	12
Annotated expression and activity data for murine recombinase alleles and transgenes: the CrePortal resource	12
Circular RNA circNRIP1 plays oncogenic roles in the progression of osteosarcoma	12
New insights into the microbiota of wild mice	11
Commentary: towards a national research infrastructure strategy for preclinical biological models in Australia	11
Neonatal lethality of mouse A/J-7SM consomic strain is caused by an insertion mutation in the Dchs1 gene	11
The mouse resource at National Resource Center for Mutant Mice of China	10
TCR CDR3 chemical complementarity to HPV epitopes is associated with a better outcome for cervical cancer	10
Predicting the potential deterioration of Barrett’s esophagus based on gut microbiota: a Mendelian randomization analysis	9
A consensus score to combine inferences from multiple centres	9
Elucidation of genetic determinants of dyslipidaemia using a global screening array for the early detection of coronary artery disease	9
A fascination with tailless mice: a scientific historical review of studies of the T/t complex	9
Comprehensive overview of disease models for Wolfram syndrome: toward effective treatments	9
The circular RNA circCRIM1 inhibits osteosarcoma progression through sponging miR-513	9
Transforming beef quality through healthy breeding: a strategy to reduce carcinogenic compounds and enhance human health: a review	8
Genetic insights into crossbred dairy cattle of Pakistan: exploring allele frequency, linkage disequilibrium, and effective population size at a genome-wide scale	8
Maternal genetic diversity and phylogenetic analysis of Indian riverine and swamp buffaloes: insights from complete mitochondrial genomes	7
Insights from homozygous signatures of cervus nippon revealed genetic architecture for components of fitness	7
Three-dimensional microCT imaging of mouse heart development from early post-implantation to late fetal stages	7
Purebred dogs show higher levels of genomic damage compared to mixed breed dogs	7
Genome-wide study for signatures of selection identifies genomic regions and candidate genes associated with milk traits in sheep	7
Comprehensive analysis of chromosomal breakpoints and candidate genes associated with male infertility: insights from cytogenetic studies and expression analyses	7
Comparative genomic studies on the TGF-β superfamily in blue whale	7
Systems genetics analysis of oral squamous cell carcinoma susceptibility using the mouse model: current position and new perspective	7
Identification of EXO1 as a potential biomarker associated with prognosis and tumor immune microenvironment for specific human cancers	7
Challenges of modelling TDP-43 pathology in mice	6
Elucidation of population stratifying markers and selective sweeps in crossbred Landlly pig population using genome-wide SNP data	6
Tachol1 QTL on mouse chromosome 1 is responsible for hypercholesterolemia and diet-induced obesity	6
Arginine attenuates chronic mountain sickness in rats via microRNA-144-5p	6
Mouse Genome Informatics (MGI): latest news from MGD and GXD	6
The mutant mouse resource and research center (MMRRC) consortium: the US-based public mouse repository system	6
E3 ubiquitin ligase COP1-mediated CEBPB ubiquitination regulates the inflammatory response of macrophages in sepsis-induced myocardial injury	6
Genome-wide screening for genetic variants in polyadenylation signal (PAS) sites in mouse selection lines for fatness and leanness	5
Knockdown of lncRNA MIAT attenuated lipopolysaccharide-induced microglial cells injury by sponging miR-613	5
Importing genetically altered animals: ensuring quality	5
Echo2Pheno: a deep-learning application to uncover echocardiographic phenotypes in conscious mice	5
A comprehensive review of livestock development: insights into domestication, phylogenetics, diversity, and genomic advances	5
The Rat Genome Database (RGD) facilitates genomic and phenotypic data integration across multiple species for biomedical research	5
Association of gene polymorphisms in MYH11 and TGF-β signaling with the susceptibility and clinical outcomes of DeBakey type III aortic dissection	5
Asian Mouse Mutagenesis Resource Association (AMMRA): mouse genetics and laboratory animal resources in the Asia Pacific	5
Complementarity and integration of animal and in vitro non-animal pre-clinical model systems– an Australian perspective	5
Mammalian genome research resources available from the National BioResource Project in Japan	5
The interplay of hydrogen sulfide and microRNAs in cardiovascular diseases: insights and future perspectives	5
Genome engineering with Cas9 and AAV repair templates, successes and pitfalls	5
Identification of prostate cancer associated genes for diagnosis and prognosis: a modernized in silico approach	5
Swine global genomic resources: insights into wild and domesticated populations	5
Sequencing and comparative genome analysis of three Indians	5
Circular RNA circMTO1 suppressed the progression of renal cell carcinoma progression by sponging miR-211 and miR-204	5
Mouse phenome database: curated data repository with interactive multi-population and multi-trait analyses	4

Impact of IL-6 rs1800795 and rs1800796 polymorphisms on clinical outcomes of COVID-19: a study on severity of disease in Turkish population	4
Inactivation of testis-specific gene C4orf46 is dispensable for spermatogenesis and fertility in mouse	4
Identification of important gene signatures in schizophrenia through feature fusion and genetic algorithm	4
Recent advances in the genomic resources for sheep	4
Genomic advancements in goat breeding: enhancing productivity, disease resistance, and sustainability in India’s rural economy	4
CDC167 exhibits potential as a biomarker for airway inflammation in asthma	4
Mouse resources at the RIKEN BioResource Research Center and the National BioResource Project core facility in Japan	4
INFRAFRONTIER quality principles in systemic phenotyping	4
Online Mendelian Inheritance in Animals (OMIA): a genetic resource for vertebrate animals	4
Comprehensive analysis of breast cancer oxidative stress related gene signature: a combination of bulk and single-cell RNA sequencing analysis	4
Genetic factors underlying Mandibular prognathism: insights from recent human and animal studies	4
Genetic variation in the Y chromosome and sex-biased DNA methylation in somatic cells in the mouse	3
The COL6A5-p.Glu2272* mutation induces chronic itch in mice	3
Retraction Note: Circ_0069718 promotes the progression of breast cancer by up-regulating NFIB through sequestering miR-590-5p	3
Mechanism of CREB1 in cardiac function of rats with heart failure via regulating the microRNA-376a-3p/TRAF6 axis	3
Preclinical research (on rare diseases): we need to talk about health equity	3
Retraction Note: CircRNA circ-ATAD1 is downregulated in endometrial cancer and suppresses cell invasion and migration by downregulating miR-10a through methylation	3
The RSPO2 gene is associated with bilateral anterior amelia in Chihuahuas	3
Assessing the causal relationship between immune cells and prostatitis: evidence from bidirectional mendelian randomization analysis	3
Genetic factors underlying host resistance to Rhipicephalus microplus tick infestation in Braford cattle: a systems biology perspective	3
Intestinal cancer development in response to oral infection with high-fat diet-induced Type 2 diabetes (T2D) in collaborative cross mice under different host genetic background effects	3
Telemedical monitoring in patients with inborn cardiac disease – experience of a tertiary care centre	3
Retraction Note: MiR-519d-3p enhances the sensitivity of non-small-cell lung cancer to tyrosine kinase inhibitors	3
A rationale for considering heart/brain axis control in neuropsychiatric disease	3
Unraveling the genetic and physiological potential of donkeys: insights from genomics, proteomics, and metabolomics approaches	3
Comprehensive ECG reference intervals in C57BL/6N substrains provide a generalizable guide for cardiac electrophysiology studies in mice	3
GWAS reveals genomic associations with swine inflammation and necrosis syndrome	3
LncRNAs PSMG3-AS1 and MEG3 negatively regulate each other to participate in endometrial carcinoma cell proliferation	3
Genome-wide insights into selection signatures for transcription factor binding sites in cattle ROH regions	3
The alliance of genome resources: transforming comparative genomics	3
Canine models of inherited retinal diseases: from neglect to well-recognized translational value	3
In search of epigenetic hallmarks of different tissues: an integrative omics study of horse liver, lung, and heart	3
The effect of different approaches to determining the regularization parameter of bayesian LASSO on the accuracy of genomic prediction	3
Generation and characterization of a knock-in mouse model for spastic tetraplegia, thin corpus callosum, and progressive microcephaly (SPATCCM)	2
Swine models for translational oncological research: an evolving landscape and regulatory considerations	2
Comprehensive selection signature analyses in dairy cattle exploiting purebred and crossbred genomic data	2
Promises and challenges of cardiac organoids	2
Understanding PACS2 syndrome’s pathomechanism by studying E209K and E211K mutations	2
Prdm9 deficiency of rat oocytes causes synapsis among non-homologous chromosomes and aneuploidy	2
RETRACTED ARTICLE: Overexpression of ROCK1 promotes cancer cell proliferation and is associated with poor prognosis in human urothelial bladder cancer	2
Identification of cis-sQTL demonstrates genetic associations and functional implications of inflammatory processes in Nelore cattle muscle tissue	2
A graph theoretical approach to experimental prioritization in genome-scale investigations	2
Identification of novel biomarkers for atherosclerosis using single-cell RNA sequencing and machine learning	2
Mapping novel QTL and fine mapping of previously identified QTL associated with glucose tolerance using the collaborative cross mice	2
What to consider for ECG in mice—with special emphasis on telemetry	2
Pyroptosis is involved in the immune microenvironment regulation of unexplained recurrent miscarriage	2
Retraction Note: Overexpression of ROCK1 promotes cancer cell proliferation and is associated with poor prognosis in human urothelial bladder cancer	2
Transcriptome studies of inherited dilated cardiomyopathies	2
Retraction Note: LncRNA TLR8-AS1 suppresses miR-34a maturation in hepatocellular carcinoma to suppress cell proliferation and migration	2
RMRP inhibition prevents NAFLD progression in rats via regulating miR-206/PTPN1 axis	2
The mouse metabolic phenotyping center (MMPC) live consortium: an NIH resource for in vivo characterization of mouse models of diabetes and obesity	2
Causal relationship between imaging-derived phenotypes and neurodegenerative diseases: a Mendelian randomization study	2
Mutation of the Thap4 gene causes dwarfism and testicular anomalies in rats and mice	2
LncRNAs at the heart of development and disease	2
The birth of piRNAs: how mammalian piRNAs are produced, originated, and evolved	2
The spontaneous mouse mutant low set ears (Lse) is caused by tandem duplication of Fgf3 and Fgf4	2
Cataloging copy number variation regions and allied diversity in goat breeds spanning pan India	2
Prune homolog 2 with BCH domain (PRUNE2) gene expression is associated with feed efficiency-related traits in Nelore steers	2
Age-associated changes in gene expression in the anterior pituitary glands of female Japanese black cattle	2
Whole-genome sequencing and genomic analysis of Norduz goat (Capra hircus)	2