Development

Papers
(The TQCC of Development is 9. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-05-01 to 2024-05-01.)
ArticleCitations
The extracellular matrix in development211
Mechanisms of human embryo development: from cell fate to tissue shape and back113
The lateral plate mesoderm93
Principles and mechanisms of asymmetric cell division83
Retinal organoids: a window into human retinal development82
Development of the cochlea72
A single-cell atlas of mouse lung development70
Single-cell transcriptome profiling of the human developing spinal cord reveals a conserved genetic programme with human-specific features69
Bioelectric signaling as a unique regulator of development and regeneration67
Understanding axial progenitor biology in vivo and in vitro64
The molecular and cellular features of 2-cell-like cells: a reference guide63
Branching morphogenesis60
Neuronal and glial regulation of CNS angiogenesis and barriergenesis57
Tissue-resident macrophages regulate lymphatic vessel growth and patterning in the developing heart57
Stem cell quiescence: the challenging path to activation57
Establishing the pattern of the vertebrate limb52
Characterization of primary models of human trophoblast50
Germline sexual fate is determined by the antagonistic action of dmrt1 and foxl3/foxl2 in tilapia50
Mechanisms of heart valve development and disease47
From pluripotency to totipotency: an experimentalist's guide to cellular potency47
Axial elongation of caudalized human organoids mimics aspects of neural tube development46
Mammary development in the embryo and adult: new insights into the journey of morphogenesis and commitment46
Normal Table of Xenopus development: a new graphical resource44
Development of a straight vertebrate body axis44
Orchestrating morphogenesis: building the body plan by cell shape changes and movements44
The heart of the neural crest: cardiac neural crest cells in development and regeneration43
Segmentation and patterning of the vertebrate hindbrain43
Transcriptional adaptation: a mechanism underlying genetic robustness42
TGFβ family signaling and development42
Cyclical endometrial repair and regeneration41
Mammalian primordial germ cell specification41
Cell trajectory modeling identifies a primitive trophoblast state defined by BCAM enrichment40
The many bits of positional information39
Development and plasticity of the corpus callosum39
WNT signaling in pre-granulosa cells is required for ovarian folliculogenesis and female fertility39
GFI1 functions to repress neuronal gene expression in the developing inner ear hair cells38
TEAD family transcription factors in development and disease38
A single cell RNA sequencing resource for early sea urchin development37
Using Drosophila to drive the diagnosis and understand the mechanisms of rare human diseases37
Neural crest lineage analysis: from past to future trajectory37
Arabidopsis root responses to salinity depend on pectin modification and cell wall sensing37
Y705 and S727 are required for the mitochondrial import and transcriptional activities of STAT3, and for regulation of stem cell proliferation37
Stochasticity and determinism in cell fate decisions36
The pulse of morphogenesis: actomyosin dynamics and regulation in epithelia36
CNS macrophages differentially rely on an intronicCsf1renhancer for their development35
Hybridization chain reaction enables a unified approach to multiplexed, quantitative, high-resolution immunohistochemistry and in situ hybridization35
What determines organ size during development and regeneration?35
Precision of tissue patterning is controlled by dynamical properties of gene regulatory networks35
Dynamic extrinsic pacing of the HOX clock in human axial progenitors controls motor neuron subtype specification35
Developmental single-cell transcriptomics in the Lytechinus variegatus sea urchin embryo34
Hallmarks of intestinal stem cells34
Pluripotent stem cells related to embryonic disc exhibit common self-renewal requirements in diverse livestock species34
Mechanical feedback-loop regulation of morphogenesis in plants34
MOrgAna: accessible quantitative analysis of organoids with machine learning33
The multiple facets of Cajal-Retzius neurons33
Single-cell transcriptomics of the early developing mouse cerebral cortex disentangle the spatial and temporal components of neuronal fate acquisition32
Insulin/IGF signaling and TORC1 promote vitellogenesis via inducing juvenile hormone biosynthesis in the American cockroach32
Understanding angiodiversity: insights from single cell biology31
Phyllotaxis as geometric canalization during plant development31
Common principles of early mammalian embryo self-organisation31
lncRNAs in development and differentiation: from sequence motifs to functional characterization31
Tissue clearing and 3D imaging in developmental biology30
Deep learning for bioimage analysis in developmental biology30
Dynamic profiling and functional interpretation of histone lysine crotonylation and lactylation during neural development30
Circular RNAs in cell differentiation and development30
Hedgehog signaling and the primary cilium: implications for spatial and temporal constraints on signaling29
The combined action of Esrrb and Nr5a2 is essential for murine naïve pluripotency29
Spatiotemporal sequence of mesoderm and endoderm lineage segregation during mouse gastrulation29
Gene-environment interactions: aligning birth defects research with complex etiology29
Sculpting with stem cells: how models of embryo development take shape29
HY5 and phytochrome activity modulate shoot-to-root coordination during thermomorphogenesis in Arabidopsis29
Regulation of otocyst patterning by Tbx2 and Tbx3 is required for inner ear morphogenesis in the mouse28
Combinatorial patterns of graded RhoA activation and uniform F-actin depletion promote tissue curvature28
A landmark-free morphometrics pipeline for high-resolution phenotyping: application to a mouse model of Down syndrome28
The origins and roles of osteoclasts in bone development, homeostasis and repair28
Stem cells in pulmonary alveolar regeneration28
Nuclear pore complexes in development and tissue homeostasis27
Zebrafish dazl regulates cystogenesis and germline stem cell specification during the primordial germ cell to germline stem cell transition27
Human assembloids26
The complex three-dimensional organization of epithelial tissues26
Neural tube closure requires the endocytic receptor Lrp2 and its functional interaction with intracellular scaffolds26
Inferring cell junction tension and pressure from cell geometry25
CFAP61 is required for sperm flagellum formation and male fertility in human and mouse25
Single-nuclei transcriptome analysis of the shoot apex vascular system differentiation in Populus25
The road to generating transplantable organs: from blastocyst complementation to interspecies chimeras25
Assisted reproductive technologies induce temporally specific placental defects and the preeclampsia risk marker sFLT1 in mouse25
The origin and mechanisms of smooth muscle cell development in vertebrates24
Mechanical and signaling mechanisms that guide pre-implantation embryo movement24
The development and stem cells of the esophagus24
FaceBase 3: analytical tools and FAIR resources for craniofacial and dental research24
The ECM as a driver of heart development and repair24
Gut innervation and enteric nervous system development: a spatial, temporal and molecular tour de force24
Gene expression variation in Arabidopsis embryos at single-nucleus resolution24
Development of the mammalian main olfactory bulb24
Cell death in animal development24
Evidence of two types of balance between stem cell mitosis and enterocyte nucleus growth in the Drosophila midgut24
Cell-cell communication through FGF4 generates and maintains robust proportions of differentiated cell types in embryonic stem cells24
The HK5 and HK6 cytokinin receptors mediate diverse developmental pathways in rice24
Distinct contributions of ECM proteins to basement membrane mechanical properties in Drosophila23
Transposable elements, circular RNAs and mitochondrial transcription in age-related genomic regulation23
Hes1 overexpression leads to expansion of embryonic neural stem cell pool and stem cell reservoir in the postnatal brain23
Asynchrony of ovule primordia initiation in Arabidopsis23
Loss of perinuclear theca ACTRT1 causes acrosome detachment and severe male subfertility in mice23
Ceramides mediate positional signals in Arabidopsis thaliana protoderm differentiation22
Integrated molecular analysis identifies a conserved pericyte gene signature in zebrafish22
Evolution and development of complex eyes: a celebration of diversity22
New trends in cellular therapy22
Prrx1b restricts fibrosis and promotes Nrg1-dependent cardiomyocyte proliferation during zebrafish heart regeneration22
Self-organized cell migration across scales – from single cell movement to tissue formation22
Retinal ganglion cell interactions shape the developing mammalian visual system22
Single-cell morphometrics reveals ancestral principles of notochord development21
Mosaic CRISPR-stop enables rapid phenotyping of nonsense mutations in essential genes21
Wnt/beta-catenin signalling is dispensable for adult neural stem cell homeostasis and activation21
Cyclical fate restriction: a new view of neural crest cell fate specification21
Fibroblast growth factor 10 is a negative regulator of postnatal neurogenesis in the mouse hypothalamus21
From head to tail: regionalization of the neural crest21
Developmental mechanisms of sex differences: from cells to organisms21
Polyploid cardiomyocytes: implications for heart regeneration21
Development and maintenance of tendons and ligaments21
ERECTA family signaling constrains CLAVATA3 and WUSCHEL to the center of the shoot apical meristem21
Deficiency and overexpression of Rtl1 in the mouse cause distinct muscle abnormalities related to Temple and Kagami-Ogata syndromes21
Model systems for regeneration:Arabidopsis20
Quantitative developmental biology in vitro using micropatterning20
Microglia in brain development and regeneration20
SCARECROW is deployed in distinct contexts during rice and maize leaf development20
Enhancer-gene specificity in development and disease20
Secreted inhibitors drive the loss of regeneration competence in Xenopus limbs20
The biomechanical basis of biased epithelial tube elongation in lung and kidney development19
APETALA2 functions as a temporal factor together with BLADE-ON-PETIOLE2 and MADS29 to control flower and grain development in barley19
Identification of regulatory elements required for Stra8 expression in fetal ovarian germ cells of the mouse19
Aster repulsion drives short-ranged ordering in the Drosophila syncytial blastoderm19
Gynoecium and fruit development in Arabidopsis19
The alx3 gene shapes the zebrafish neurocranium by regulating frontonasal neural crest cell differentiation timing19
Diversity and robustness of bone morphogenetic protein pattern formation19
Fluid flow as a driver of embryonic morphogenesis19
Knock-in tagging in zebrafish facilitated by insertion into non-coding regions19
Three-axis classification of mouse lung mesenchymal cells reveals two populations of myofibroblasts19
Regulatory mechanisms governing epidermal stem cell function during development and homeostasis18
Germ cell determination and the developmental origin of germ cell tumors18
The mechanosensitive channel Piezo1 cooperates with semaphorins to control neural crest migration18
Robustness and timing of cellular differentiation through population-based symmetry breaking18
Stable iPSC-derived NKX2-1+ lung bud tip progenitor organoids give rise to airway and alveolar cell types18
Intermittent ERK oscillations downstream of FGF in mouse embryonic stem cells18
High temperature perception in leaves promotes vascular regeneration and graft formation in distant tissues18
Defining the signalling determinants of a posterior ventral spinal cord identity in human neuromesodermal progenitor derivatives18
Immune cells in cardiac repair and regeneration18
The Drosophila ribosome protein S5 paralog RpS5b promotes germ cell and follicle cell differentiation during oogenesis18
Maintenance DNA methylation in pre-meiotic germ cells regulates meiotic prophase by facilitating homologous chromosome pairing17
Metaphloem development in the Arabidopsis root tip17
A combination of Notch signaling, preferential adhesion and endocytosis induces a slow mode of cell intercalation in the Drosophila retina17
Cell cycle control during early embryogenesis17
CCDC38 is required for sperm flagellum biogenesis and male fertility in mice17
The extracellular matrix protein agrin is essential for epicardial epithelial-to-mesenchymal transition during heart development17
Biology of resident tissue macrophages17
What machine learning can do for developmental biology17
Shedding light on developmental ERK signaling with genetically encoded biosensors17
Msl3 promotes germline stem cell differentiation in female Drosophila17
Protein manipulation using single copies of short peptide tags in cultured cells and in Drosophila melanogaster17
Human embryo implantation17
Building neuromuscular junctions in vitro17
Towards understanding the origin of animal development17
Cell state transitions: definitions and challenges17
Premeiotic endoreplication is essential for obligate parthenogenesis in geckos17
An L-type lectin receptor-like kinase promotes starch accumulation during rice pollen maturation17
A single-cell atlas of de novo β-cell regeneration reveals the contribution of hybrid β/δ-cells to diabetes recovery in zebrafish16
Paternal MTHFR deficiency leads to hypomethylation of young retrotransposons and reproductive decline across two successive generations16
Enhancer RNAs step forward: new insights into enhancer function16
longfin causes cis-ectopic expression of the kcnh2a ether-a-go-go K+ channel to autonomously prolong fin outgrowth16
Cell type-specific dynamics underlie cellular growth variability in plants16
The SRCAP chromatin remodeling complex promotes oxidative metabolism during prenatal heart development16
Age reprogramming: cell rejuvenation by partial reprogramming16
Thymosin β4 is essential for adherens junction stability and epidermal planar cell polarity16
C2CD6 regulates targeting and organization of the CatSper calcium channel complex in sperm flagella16
Deep learning is widely applicable to phenotyping embryonic development and disease16
FGF signalling plays similar roles in development and regeneration of the skeleton in the brittle star Amphiura filiformis16
FOXO1 mediates hypoxia-induced G0/G1 arrest in ovarian somatic granulosa cells by activating the TP53INP1-p53-CDKN1A pathway16
Sequestration to lipid droplets promotes histone availability by preventing turnover of excess histones15
Lipid metabolism in focus: how the build-up and breakdown of lipids affects stem cells15
Development of vascular regulation in the zebrafish embryo15
Loss of Prm1 leads to defective chromatin protamination, impaired PRM2 processing, reduced sperm motility and subfertility in male mice15
Avian auditory hair cell regeneration is accompanied by JAK/STAT-dependent expression of immune-related genes in supporting cells15
Rectified random cell motility as a mechanism for embryo elongation15
Functional evidence that Activin/Nodal signaling is required for establishing the dorsal-ventral axis in the annelid Capitella teleta15
The initiation knot is a signaling center required for molar tooth development15
DPPA2 and DPPA4 are dispensable for mouse zygotic genome activation and pre-implantation development15
Hypoxia induces an early primitive streak signature, enhancing spontaneous elongation and lineage representation in gastruloids15
The origin and role of the renal stroma15
Calcium and activity-dependent signaling in the developing cerebral cortex15
Dlx1/2-dependent expression of Meis2 promotes neuronal fate determination in the mammalian striatum15
KATNB1 is a master regulator of multiple katanin enzymes in male meiosis and haploid germ cell development15
Ciona embryonic tail bending is driven by asymmetrical notochord contractility and coordinated by epithelial proliferation15
INO80 requires a polycomb subunit to regulate the establishment of poised chromatin in murine spermatocytes15
Imaging the onset of oscillatory signaling dynamics during mouse embryo gastrulation15
Fis1 ablation in the male germline disrupts mitochondrial morphology and mitophagy, and arrests spermatid maturation15
In vitro models of the human heart15
Single-molecule tracking technologies for quantifying the dynamics of gene regulation in cells, tissue and embryos15
Expansion and innovation in auxin signaling: where do we grow from here?15
Identification of enhancer regulatory elements that direct epicardial gene expression during zebrafish heart regeneration15
Proper timing of a quiescence period in precursor prospermatogonia is required for stem cell pool establishment in the male germline14
Reprogramming cellular identity in vivo14
Molecular and cellular architecture of the larval sensory organ in the cnidarian Nematostella vectensis14
Visualizing polymeric components that define distinct root barriers across plant lineages14
KLF17 promotes human naïve pluripotency but is not required for its establishment14
Mural Wnt/β-catenin signaling regulates Lama2 expression to promote neurovascular unit maturation14
Generation of a homozygous mutant drug transporter (ABCB1) knockout line in the sea urchinLytechinus pictus14
Symbiosis: the other cells in development14
Human pluripotent stem cell-derived kidney organoids for personalized congenital and idiopathic nephrotic syndrome modeling14
The microRNA miR-202 prevents precocious spermatogonial differentiation and meiotic initiation during mouse spermatogenesis14
Kinesin motor KIFC1 is required for tubulin acetylation and actin-dependent spindle migration in mouse oocyte meiosis14
Toll signalling promotes blastema cell proliferation during cricket leg regeneration via insect macrophages14
Initiation of Otx2 expression in the developing mouse retina requires a unique enhancer and either Ascl1 or Neurog2 activity14
The Arabidopsis stomatal polarity protein BASL mediates distinct processes before and after cell division to coordinate cell size and fate asymmetries14
The zebrafish issue: 25 years on14
Focal adhesion-mediated cell anchoring and migration: from in vitro to in vivo14
Hox genes in development and beyond14
Human iPSC-derived cerebral organoids model features of Leigh syndrome and reveal abnormal corticogenesis14
Post-transcriptional regulation by the exosome complex is required for cell survival and forebrain development via repression of P53 signaling14
Notch signaling determines cell-fate specification of the two main types of vomeronasal neurons of rodents14
An integrated atlas of human placental development delineates essential regulators of trophoblast stem cells14
It takes all kinds: heterogeneity among satellite cells and fibro-adipogenic progenitors during skeletal muscle regeneration13
Environmental oxygen regulates astrocyte proliferation to guide angiogenesis during retinal development13
Mammalian tracheal development and reconstruction: insights from in vivo and in vitro studies13
Defining epithelial-mesenchymal transitions in animal development13
When form meets function: the cells and signals that shape the lymphatic vasculature during development13
Exocrine gland structure-function relationships13
Gene expression profiling of epidermal cell types in C. elegans using Targeted DamID13
Agrin/Lrp4 signal constrains MuSK-dependent neuromuscular synapse development in appendicular muscle13
Ethylene signaling increases reactive oxygen species accumulation to drive root hair initiation in Arabidopsis13
Development of a 3D atlas of the embryonic pancreas for topological and quantitative analysis of heterologous cell interactions13
Lmo7 recruits myosin II heavy chain to regulate actomyosin contractility and apical domain size in Xenopus ectoderm13
Concerted morphogenesis of genital ridges and nephric ducts in the mouse captured through whole-embryo imaging13
Sperm-borne miR-202 targets SEPT7 and regulates first cleavage of bovine embryos via cytoskeletal remodeling13
SyNPL: Synthetic Notch pluripotent cell lines to monitor and manipulate cell interactions in vitro and in vivo13
Understanding the role of lipids and lipoproteins in development13
Current approaches to fate mapping and lineage tracing using image data13
PRDM paralogs antagonistically balance Wnt/β-catenin activity during craniofacial chondrocyte differentiation13
Microbial influences on gut development and gut-brain communication13
Single-cell RNA sequencing reveals PDGFRα+ stromal cell subpopulations that promote proacinar cell differentiation in embryonic salivary gland organoids13
Reactive oligodendrocyte progenitor cells (re-)myelinate the regenerating zebrafish spinal cord13
let-7 miRNAs inhibit CHD7 expression and control auditory-sensory progenitor cell behavior in the developing inner ear13
Formin 3 directs dendritic architecture via microtubule regulation and is required for somatosensory nociceptive behavior13
Warm and cold temperatures have distinct germline stem cell lineage effects during Drosophila oogenesis13
Natural killer cells act as an extrinsic barrier for in vivo reprogramming13
Dynamic properties of mitochondria during human corticogenesis13
E2F1 regulates testicular descent and controls spermatogenesis by influencing WNT4 signaling13
Formal proof of the requirement of MESP1 and MESP2 in mesoderm specification and their transcriptional control via specific enhancers in mice13
LONP1-mediated mitochondrial quality control safeguards metabolic shifts in heart development13
An atlas of seven zebrafish hox cluster mutants provides insights into sub/neofunctionalization of vertebrate Hox clusters12
A developmental lineage-based gene co-expression network for mouse pancreatic β-cells reveals a role for Zfp800 in pancreas development12
Fatty acid-binding proteins and fatty acid synthase influence glial reactivity and promote the formation of Müller glia-derived progenitor cells in the chick retina12
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