OOIR: Observatory of International Research

Papers

(The H4-Index of Protein Science is 41. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-05-01 to 2024-05-01.)

Article	Citations
UCSF ChimeraX: Structure visualization for researchers, educators, and developers	4755
The BioGRID database: A comprehensive biomedical resource of curated protein, genetic, and chemical interactions	807
PANTHER: Making genome‐scale phylogenetics accessible to all	546
KEGG mapping tools for uncovering hidden features in biological data	375
Crystal structure of Nsp15 endoribonuclease NendoU from SARS‐CoV‐2	272
DynaMut2: Assessing changes in stability and flexibility upon single and multiple point missense mutations	246
DichroWeb, a website for calculating protein secondary structure from circular dichroism spectroscopic data	216
The Bio3D packages for structural bioinformatics	206
Architecture and self‐assembly of the SARS‐CoV‐2 nucleocapsid protein	200
UCSF ChimeraX: Tools for structure building and analysis	193
Benchmarking AlphaFold for protein complex modeling reveals accuracy determinants	146
DALI shines a light on remote homologs: One hundred discoveries	142
The ImageJ ecosystem: Open‐source software for image visualization, processing, and analysis	106
The Human Protein Atlas—Spatial localization of the human proteome in health and disease	104
Observed Antibody Space: A diverse database of cleaned, annotated, and translated unpaired and paired antibody sequences	101
Spatial arrangement of proteins in planar and curved membranes by PPM 3.0	98
Improved coarse‐grained model for studying sequence dependent phase separation of disordered proteins	95
The AutoDock suite at 30	92
RCSB Protein Data Bank: Celebrating 50 years of the PDB with new tools for understanding and visualizing biological macromolecules in 3D	88
Using evolutionary data to make sense of macromolecules with a “face‐lifted” ConSurf	86
Leginon: New features and applications	82
Nanodiscs: A toolkit for membrane protein science	80
Characterization of the SARS‐CoV‐2 E Protein: Sequence, Structure, Viroporin, and Inhibitors	70
AlphaFold2 fails to predict protein fold switching	70
DIALS as a toolkit	63

Liquid–liquid phase separation of tau: From molecular biophysics to physiology and disease	62
PANNZER—A practical tool for protein function prediction	59
PyXlinkViewer: A flexible tool for visualization of protein chemical crosslinking data within the PyMOL molecular graphics system	58
Interplay between tau and α‐synuclein liquid–liquid phase separation	53
A mechanistic view of enzyme evolution	48
Comparing the binding properties of peptides mimicking the Envelope protein of SARS‐CoV and SARS‐CoV‐2 to the PDZ domain of the tight junction‐associated PALS1	47
Toward a new picture of the living plasma membrane	47
Multiple sites on SARS‐CoV‐2 spike protein are susceptible to proteolysis by cathepsins B, K, L, S, and V	47
PDBsum extras: SARS‐CoV‐2 and AlphaFold models	45
Structural and functional understanding of the toll‐like receptors	45
Intrinsic protein disorder and conditional folding in AlphaFoldDB	45
How to use the MEROPS database and website to help understand peptidase specificity	44
Progress toward Alzheimer's disease treatment: Leveraging the Achilles' heel of Aβ oligomers?	44
BepiPred‐3.0: Improved B‐cell epitope prediction using protein language models	43
PDB‐101: Educational resources supporting molecular explorations through biology and medicine	42
Crystallographic molecular replacement using an in silico‐generated search model of SARS‐CoV‐2 ORF8	41