Molecular Ecology

Article	Citations
Out of the Qinghai‐Tibet plateau: Genomic biogeography of the alpine monospecific genus Megadenia (Biscutelleae, Brassicaceae)	192
Plant–pollinator network architecture does not impact intraspecific microbiome variability	188
Population dynamics in newts of the Carpathian Mountains	170
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Seascape Genomics of Red Abalone: Limited Range‐Wide Population Structure and Evidence for Local Adaptation	98
Circumpolar Population Structure, Diversity and Recent Evolutionary History of the Bearded Seal in Relation to Past and Present Icescapes	95
Whole‐Genome Evaluation of Genetic Rescue: The Case of a Curiously Isolated and Endangered Butterfly	89
Integrative Genomics Refines Tissues, Candidate Genes and Putative Regulatory Links Involved in the Humic Adaptation of Keystone Freshwater Fish	80
Plumbing the depths with environmental DNA (eDNA): Metabarcoding reveals biodiversity zonation at 45–60 m on mesophotic coral reefs	69
The Evolution of Locally Adaptive Chromosome Inversions in Mimulus guttatus	68
Admixture Increases Genetic Diversity and Adaptive Potential in Australasian Killer Whales	66
Suboptimal environmental conditions prolong phage epidemics in bacterial populations	59
Combining population genomics and biophysical modelling to assess connectivity patterns in an Antarctic fish	58
Issue Information	58
On the origin and structure of haplotype blocks	57
Genome‐phenotype‐environment associations identify signatures of selection in a panmictic population of threespine stickleback	56
Quantifying adaptive evolution and the effects of natural selection across the Norway spruce genome	56
Ecological stoichiometry and fungal community turnover reveal variation among mycorrhizal partners in their responses to warming and drought	56
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Evolutionary and ecological drivers of local adaptation and speciation in a North American avian species complex	54
Associations between MHC class II variation and phenotypic traits in a free‐living sheep population	53
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Adaptive cellular evolution or cellular system drift in hares	50
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Genomic data and common garden experiments reveal climate‐driven selection on ecophysiological traits in two Mediterranean oaks	48

Environmental microbes promote phenotypic plasticity in reproduction and sleep behaviour	47
Ecological transcriptomics reveals stress response pathways of a ground‐herb species in a waterlogging gradient of Amazonian riparian forests	47
Population genetics as a tool to elucidate pathogen reservoirs: Lessons fromPseudogymnoascus destructans, the causative agent of White‐Nose disease in bats	43
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What can cold‐induced transcriptomes of Arctic Brassicaceae tell us about the evolution of cold tolerance?	42
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Comparative Genomics Uncovers Molecular Adaptations for Cetacean Deep‐Sea Diving	40
Genomic diversity and differentiation between island and mainland populations of white‐tailed eagles (Haliaeetus albicilla)	40
Population genomic evidence of selection on structural variants in a natural hybrid zone	40
Population Genomics Reveals Local Adaptation Related to Temperature Variation in Two Stream Frog Species: Implications for Vulnerability to Climate Warming	39
Signals of differential introgression in the genome of natural hybrids of Caribbean anoles	38
Issue Information	38
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Genomic evidence of an ancient inland temperate rainforest in the Pacific Northwest of North America	37
How structural variants shape avian phenotypes: Lessons from model systems	36
Rapid turnover and evolution of sex‐determining regions in Sebastes rockfishes	36
The prevalence of copy number increase at multiallelic copy number variants associated with cave colonization	36
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Insights into the potential for mutualistic and harmful host–microbe interactions affecting brown alga freshwater acclimation	36
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DNA metabarcoding reveals impact of local recruitment, dispersal, and hydroperiod on assembly of a zooplankton metacommunity	35
Genomic consequences of colonisation, migration and genetic drift in barn owl insular populations of the eastern Mediterranean	35
Adaptive and nonadaptive causes of heterogeneity in genetic differentiation across the Mimulus guttatus genome	35
Understanding the role of temperature in seasonal timing: Effects on behavioural, physiological and molecular phenotypes	34
Counter‐gradient variation in gene expression between fish populations facilitates colonization of low‐dissolved oxygen environments	33
Temperature‐dependent effects of house fly proto‐Y chromosomes on gene expression could be responsible for fitness differences that maintain polygenic sex determination	33
Issue Information	32
Comparative analysis of gut microbiome of mangrove brachyuran crabs revealed patterns of phylosymbiosis and codiversification	32
Long‐read sequencing in ecology and evolution: Understanding how complex genetic and epigenetic variants shape biodiversity	31
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Comparative linkage mapping uncovers recombination suppression across massive chromosomal inversions associated with local adaptation in Atlantic silversides	31
Population subdivision promoted by a sea‐level‐change‐driven bottleneck: A glimpse from the evolutionary history of the mangrove plant Aegiceras corniculatum	30
Evidence of backcross inviability and mitochondrial DNA paternal leakage in sea turtle hybrids	30
Orchid–mycorrhizal fungi interactions reveal a duality in their network structure in two European regions differing in climate	30
Legacies of invertebrate exclusion and tree secondary metabolites control fungal communities in dead wood	30
Telomere length positively correlates with pace‐of‐life in a sex‐ and cohort‐specific way and elongates with age in a wild mammal	30
Speciation without gene‐flow in hybridizing deer	30
Long‐term spatiotemporal genetic structure of an accidental parasitoid introduction, and local changes in prevalence of its associatedWolbachiasymbiont	30
Late Pleistocene landscape changes and habitat specialization as promoters of population genomic divergence in Amazonian floodplain birds	30
Low but significant evolutionary potential for growth, phenology and reproduction traits in European beech	30
Genetic diversity and population structure in Vitis species illustrate phylogeographic patterns in eastern North America	29
Community dynamics of soil‐borne fungal communities along elevation gradients in neotropical and palaeotropical forests	29
Host range of a parasitoid wasp is linked to host susceptibility to its mutualistic viral symbiont	29
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Relationships between phenotypic plasticity and epigenetic variation in two Caribbean Acropora corals	29
Genomic, morphological and physiological data support fast ecotypic differentiation and incipient speciation in an alpine diving beetle	29
Contrasting laboratory and field outcomes of bat–moth interactions	29
Direct and indirect genetic effects of a social supergene	28
Microbial population genomes from the Amazon River reveal possible modulation of the organic matter degradation process in tropical freshwaters	28

Issue Information	28
Alternative developmental and transcriptomic responses to host plant water limitation in a butterfly metapopulation	28
Symbiosis modulates gene expression of symbionts, but not coral hosts, under thermal challenge	28
Genetic connectivity of two marine gastropods in the Mediterranean Sea: seascape genetics reveals species‐specific oceanographic drivers of gene flow	28
The ephemeral microbiota: Ecological context and environmental variability drive the body surface microbiota composition of Magellanic penguins across subantarctic breeding colonies	28
Natural selection drives genome‐wide evolution via chance genetic associations	28
Stable coexistence or competitive exclusion? Fern endophytes demonstrate rapid turnover favouring a dominant fungus	28
Cryptic diversity within thePoecilochirus carabimite species complex phoretic onNicrophorusburying beetles: Phylogeny, biogeography, and host specificity	28
Transmissible cancer and longitudinal telomere dynamics in Tasmanian devils (Sarcophilus harrisii)	27
Differential gene expression and mitonuclear incompatibilities in fast‐ and slow‐developing interpopulation Tigriopus californicus hybrids	27
Issue Information	27
Chromosome‐level genome assembly for takin (Budorcas taxicolor) provides insights into its taxonomic status and genetic diversity	27
Genomic profiling of climate adaptation in Aedes aegypti along an altitudinal gradient in Nepal indicates nongradual expansion of the disease vector	27
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Hybrid enrichment of adaptive variation revealed by genotype–environment associations in montane sedges	27
The short‐term, genome‐wide effects of indirect selection deserve study: A response to Charlesworth and Jensen (2022)	27
Amazonian birds in more dynamic habitats have less population genetic structure and higher gene flow	27
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Grassland ecosystem type drives AM fungal diversity and functional guild distribution in North American grasslands	27
Extremes of snow and temperature affect patterns of genetic diversity and differentiation in the alpine butterfly Parnassius smintheus	26
A new subfamily of ionotropic glutamate receptors unique to the echinoderms with putative sensory role	26
A female‐biased gene expression signature of dominance in cooperatively breeding meerkats	26
The impacts of positive selection on genomic variation in Drosophila serrata: Insights from a deep learning approach	26
Climate‐related naturally occurring epimutation and their roles in plant adaptation in A. thaliana	26
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A sex chromosome polymorphism maintains divergent plumage phenotypes between extensively hybridizing yellowhammers (Emberiza citrinella) and pine buntings (E. leucocephalos)	26
Multiple paths toward repeated phenotypic evolution in the spiny‐leg adaptive radiation (Tetragnatha; Hawai'i)	26
Genomic analysis of a parasite invasion: Colonization of the Americas by the blood fluke Schistosoma mansoni	25
Chromosome‐level genome assembly of a deep‐sea Venus flytrap sea anemone sheds light upon adaptations to an extremely oligotrophic environment	25
Comparative phylogeography reveals the demographic patterns of neotropical ancient mountain species	25
Gravitropic Gene Expression Divergence Associated With Adaptation to Contrasting Environments in an Australian Wildflower	25
Genome‐wide SNP assessment of contemporary European red deer genetic structure highlights the distinction of peripheral populations and the main admixture zones in Europe	25
Genomic data support multiple introductions and explosive demographic expansions in a highly invasive aquatic insect	25
Genetic and telomeric variability: Insights from a tropical avian hybrid zone	25
Mitonuclear discordance results from incomplete lineage sorting, with no detectable evidence for gene flow, in a rapid radiation of Todiramphus kingfishers	25
Experimental sexual selection reveals rapid evolutionary divergence in sex‐specific transcriptomes and their interactions following mating	24
Historical land use patterns provide insight into contemporary insect diversity loss	24
Historical population declines prompted significant genomic erosion in the northern and southern white rhinoceros (Ceratotherium simum)	24
Drivers of change and stability in the gut microbiota of an omnivorous avian migrant exposed to artificial food supplementation	24
Novel genome sequence of Chinese cavefish (Triplophysa rosa) reveals pervasive relaxation of natural selection in cavefish genomes	24
Dispersal in a house sparrow metapopulation: An integrative case study of genetic assignment calibrated with ecological data and pedigree information	24
Annual and perennial Medicago show signatures of parallel adaptation to climate and soil in highly conserved genes	24
Diving into the diversity of colour patterns in reef fishes	23
A Latitudinal Gradient of Reference Genomes	23
Baculoviruses hijack the visual perception of their caterpillar hosts to induce climbing behaviour thus promoting virus dispersal	23
Gastrointestinal symbiont diversity in wild gorilla: A comparison of bacterial and strongylid communities across multiple localities	23
Transcriptomic response of Cinachyrella cf. cavernosa sponges to spatial competition	23
Rapid shifts in thermal reaction norms and tolerance of brooded coral larvae following parental heat acclimation	23
Long‐wavelength‐sensitive (lws) opsin gene expression, foraging and visual communication in coral reef fishes	23
Genomic divergence between two sister Medicago species triggered by the quaternary climatic oscillations on the Qinghai–Tibet plateau and northern China	23
Host blood meal identity modifies vector gene expression and competency	23
Host phylogeny and functional traits differentiate gut microbiomes in a diverse natural community of small mammals	23
Circumpolar and Regional Seascape Drivers of Genomic Variation in a Southern Ocean Octopus	22
Grassland Afforestation Drives Biotic Homogenisation of Soil Microbial Communities at a Regional Scale	22
Geography and Environment Shape Spatial Genetic Variation and Predict Climate Maladaptation Across Isolated and Disjunct Populations of Pinus muricata	22
Alternative splicing: An overlooked mechanism contributing to local adaptation?	22
The association between female reproductive performance and leukocyte telomere length in wild Soay sheep	22
Effect of urbanization and parasitism on the gut microbiota of Darwin's finch nestlings	22
Genomics‐informed conservation units reveal spatial variation in climate vulnerability in a migratory bird	21
Molecular Adjustment to a Social Niche: Brain Transcriptomes Reveal Divergent Influence of Social Environment on the Two Queen Morphs of the Ant Temnothorax rugatulus	21
Australian soil microbiome: A first sightseeing regional prediction driven by cycles of soil temperature and pedogenic variations	21
Intrinsic variation in the vertically transmitted core virome of the mosquito Aedes aegypti	21
A glimpse at an early stage of microbe domestication revealed in the variable genome of Torulaspora delbrueckii, an emergent industrial yeast	21
Corrigendum	21
City divided: Unveiling family ties and genetic structuring of coyotes in Seattle	21
Genomics reveals a genetically isolated population of the Pacific white‐sided dolphin (Lagenorhynchus obliquidens) distributed in the Sea of Japan	21
Early‐life immune expression profiles predict later‐life health and fitness in a wild rodent	21
Hybridization and gene expression: Beyond differentially expressed genes	21
Rickettsial pathogens drive microbiota assembly in Hyalomma marginatum and Rhipicephalus bursa ticks	21
Integrated organismal responses induced by projected levels of CO2 and temperature exposures in the early life stages of lake sturgeon	21
Molecular signatures of alternative reproductive strategies in a facultatively social hover wasp	21
The structure of bacteria–fungi bipartite networks along elevational gradients in contrasting climates	20
Sunspot activity influences tree growth: Molecular evidence and ecological implications	20
Telomere dynamics in relation to experimentally increased locomotion costs and fitness in great tits	20
Transcriptional chronology reveals conserved genes involved in pennate diatom sexual reproduction	20
Reproductive isolation in a three‐way contact zone	20
The biogeographic and evolutionary processes shaping population divergence in Laupala	20
Topographic barriers drive the pronounced genetic subdivision of a range‐limited fossorial rodent	20
Landscape‐scale population connectivity in two parasitoid species associated with the spruce budworm: Testing the birdfeeder effect using genetic data	20
Host‐pathogen‐environment interactions predict survival outcomes of adult sockeye salmon (Oncorhynchus nerka) released from fisheries	20

Isolation and reconnection: Demographic history and multiple contact zones of the green odorous frog (Odorrana margaretae) around the Sichuan Basin	20
Within‐individual repeatability in telomere length: A meta‐analysis in nonmammalian vertebrates	20
Climate adaptation and vulnerability of foundation species in a global change hotspot	20
Rapid evolution of novel biotic interactions in the UK Brown Argus butterfly uses genomic variation from across its geographical range	19
Functional differentiation and complementation of alkaline phosphatases and choreography of DOP scavenging in a marine diatom	19
Brazilian marine phylogeography: A literature synthesis and analysis of barriers	19
Founder effects shape linkage disequilibrium and genomic diversity of a partially clonal invader	19
Consistent predictors of microbial community composition across spatial scales in grasslands reveal low context‐dependency	19
Environment and shipping drive environmental DNA beta‐diversity among commercial ports	19
Decoding plant‐induced transcriptomic variability and consistency in two related polyphagous mites differing in host ranges	19
Pleistocene origins, western ghost lineages, and the emerging phylogeographic history of the red wolf and coyote	19
Traits and tradeoffs among non‐native ectomycorrhizal fungal symbionts affect pine seedling establishment in a Hawaiian coinvasion landscape	19
The impact of indoor residual spraying on Plasmodium falciparum microsatellite variation in an area of high seasonal malaria transmission in Ghana, West Africa	19
Genomic insights into hybrid zone formation: The role of climate, landscape, and demography in the emergence of a novel hybrid lineage	19
Transposable elements mark a repeat‐rich region associated with migratory phenotypes of willow warblers (Phylloscopus trochilus)	19
Comparative genome sequencing reveals insights into the dynamics of Wolbachia in native and invasive cherry fruit flies	18
Mating system variation and gene expression in the male reproductive tract of Peromyscus mice	18
Both Structural Variant and Single Nucleotide Polymorphism Load Impact Lifetime Fitness in a Threatened Bird Species	18
Why Is It Too Cold? Towards a Mechanistic Understanding of Cold‐Water Pollution Effects on Recruitment of an Imperiled Warmwater Fish	18
Phenotypic and genomic diversification with isolation by environment along elevational gradients in a neotropical treefrog	18
More complex than you think: Taxonomic and temporal patterns of plant–pollinator networks of caraway (Carum carvi L.)	18
Vertebrate genomics and adaptation – Status and prospects in Africa	18
Demographic modelling helps track the rapid and recent divergence of a conifer species pair from Central Mexico	18
Organellar DNA continues to provide a rich source of information in the genomics era	18
Ancient Hybridisation Fuelled Diversification in Acropora Corals	18
Issue Information	18
Shared Dispersal Patterns but Contrasting Levels of Gene Flow in Two Anadromous Salmonids Along a Broad Subarctic Coastal Gradient	18
Genomic divergence and introgression between cryptic species of a widespread North American songbird	18
Molecular insights into the dynamics of species invasion by hybridisation in Tasmanian eucalypts	18
Museomics Sheds Light on Evolutionary Diversity in a Critically Endangered Cockatoo Species From Wallacea	18
Secondary contact erodes Pleistocene diversification in a wide‐ranging freshwater mussel (Quadrula)	18
Genomic and functional evidence reveals convergent evolution in fishes on the Tibetan Plateau	18
Genetic mechanisms and biological processes underlying host response to ophidiomycosis (snake fungal disease) inferred from tissue‐specific transcriptome analyses	18
Maternally derived avian corticosterone affects offspring genome‐wide DNA methylation in a passerine species	18
Phylogeography of the wide‐host range panglobal plant pathogen Phytophthora cinnamomi	17
Comparative Population Genomic Diversity and Differentiation in Trapdoor Spiders and Relatives (Araneae, Mygalomorphae)	17
Genomic analysis reveals a polygenic architecture of antler morphology in wild red deer (Cervus elaphus)	17
Mitonuclear interactions impact aerobic metabolism in hybrids and may explain mitonuclear discordance in young, naturally hybridizing bird lineages	17
Facilitated introgression from domestic goat into Alpine ibex at immune loci	17
Spatial variation in genomic signatures of local adaptation during the cane toad invasion of Australia	17
Coral larvae suppress heat stress response during the onset of symbiosis decreasing their odds of survival	17
Biogeography and the evolution of acoustic communication in the polyploid North American grey treefrog complex	17
A genomic assessment of the marine‐speciation paradox within the toothed whale superfamily Delphinoidea	17
Genetic architecture and heritability of early‐life telomere length in a wild passerine	17
Cophylogenetic analyses ofTrachymyrmexant‐fungal specificity: “One to one with some exceptions”	17
Panzootic chytrid fungus exploits diverse amphibian host environments through plastic infection strategies	17
Runs of homozygosity reveal contrasting histories of inbreeding across global lineages of the edible porcini mushroom, Boletus edulis	17
Barriers to chimpanzee gene flow at the south‐east edge of their distribution	17
Gene expression underlying parenting and being parented shows limited plasticity in response to different ambient temperatures	17
Demographic history shapes genomic variation in an intracellular parasite with a wide geographical distribution	17
Population Genomics of Adaptive Radiations: Exceptionally High Levels of Genetic Diversity and Recombination in an Endemic Spider From the Canary Islands	17
Structure, variation and assembly of body‐wide microbiomes in endangered crested ibisNipponia nippon	17
The worldwide invasion history of a pest ambrosia beetle inferred using population genomics	17
Parentage analysis across age cohorts reveals sex differences in reproductive skew in a group‐living cichlid fish,Neolamprologus multifasciatus	17
Philopatry influences the genetic population structure of the blacktip shark (Carcharhinus limbatus) at multiple spatial scales	16
Issue Information	16
Large‐scale DNA barcoding of the subfamily Culterinae (Cypriniformes: Xenocyprididae) in East Asia unveils a geographical scale effect, taxonomic warnings and cryptic diversity	16
Global dissemination of influenza A virus is driven by wild bird migration through arctic and subarctic zones	16
Contrast and Genomic Characterisation of Ancient and Recent Interspecific Introgression Between Deeply Diverged Moustache Toads (Leptobrachium)	16
The holocentric chromosome microevolution: From phylogeographic patterns to genomic associations with environmental gradients	16
Conserved and Unique Protein Expression Patterns Across Reproductive Stage Transitions in Social Hymenopteran Queens	16
Fine‐scale genome‐wide signature of Pleistocene glaciation in Thitarodes moths (Lepidoptera: Hepialidae), host of Ophiocordyceps fungus in the Hengduan Mountains	16
The Roles of Plasticity and Selection in Rapid Phenotypic Changes at the Pacific Oyster Invasion Front in Europe	16
African climate and geomorphology drive evolution and ghost introgression in sable antelope	16
Patterns of genetic variation and local adaptation of a native herbivore to a lethal invasive plant	16
Immune gene expression in the mosquito vector Culex quinquefasciatus during an avian malaria infection	16
Soil microbial diversity and community composition during conversion from conventional to organic agriculture	16
Clones on the run: The genomics of a recently expanded partially clonal species	16
Genomic hotspots of chromosome rearrangements explain conserved synteny despite high rates of chromosome evolution in a holocentric lineage	16
Interspecies genome divergence is predominantly due to frequent small scale rearrangements in Eucalyptus	16
The genomics of phenotypically differentiated Asellusaquaticus cave, surface stream and lake ecotypes	16
Demography and evolutionary history of grey wolf populations around the Bering Strait	16
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Testing concordance and conflict in spatial replication of landscape genetics inferences	16
Effects of hunting on mating, relatedness, and genetic diversity in a puma population	16
The for gene as one of the drivers of foraging variations in a parasitic wasp	16
Rapid adaptive radiation in a hillstream cyprinid fish in the East African White Nile River basin	16
Issue Information	16
Temporal collections to study invasion biology	16
Genomic divergence of Stellera chamaejasme through local selection across the Qinghai–Tibet plateau and northern China	16
Metabarcoding analysis of marine zooplankton confirms the ecological role of a sheltered bight along an exposed continental shelf	16
Population structure in Neotropical plants: Integrating pollination biology, topography and climatic niches	16
Multiple introductions, polyploidy and mixed reproductive strategies are linked to genetic diversity and structure in the most widespread invasive plant across Southern Ocean archipelagos	15
Genetic features of bivalve transmissible neoplasia in blue mussels from the Kola Bay (Barents Sea) suggest a recent trans‐Arctic migration of the cancer lineages	15
An aphid symbiont confers protection against a specialized RNA virus, another increases vulnerability to the same pathogen	15
Comparative Population Genomics Reveal the Determinants of Genome Erosion in Two Sympatric Neotropical Falcons	15
Community‐wide correlations between species richness, abundance and population genomic diversity in a freshwater biodiversity hotspot	15
Experimental evidence that root‐associated fungi improve plant growth at high altitude	15
Bacterial‐fungal interactions and their impact on microbial pathogenesis	15
The dynamic response to hypo‐osmotic stress reveals distinct stages of freshwater acclimation by a euryhaline diatom	15
The role of neutral and adaptive genomic variation in population diversification and speciation in two ground squirrel species of conservation concern	15
Contrasting Genomic Diversity and Inbreeding Levels Among Two Closely Related Falcon Species With Overlapping Geographic Distributions	15
Riverscape community genomics: A comparative analytical approach to identify common drivers of spatial structure	15
First insight into oral microbiome diversity in Papua New Guineans reveals a specific regional signature	15
Slow and steady wins the race: Spatial and stochastic processes and the failure of suppression gene drives	15