Molecular Ecology

Article	Citations
Experimental evidence that root‐associated fungi improve plant growth at high altitude	202
More complex than you think: Taxonomic and temporal patterns of plant–pollinator networks of caraway (Carum carvi L.)	184
Demographic modelling helps track the rapid and recent divergence of a conifer species pair from Central Mexico	136
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Genetic and telomeric variability: Insights from a tropical avian hybrid zone	74
Clones on the run: The genomics of a recently expanded partially clonal species	64
Community‐wide correlations between species richness, abundance and population genomic diversity in a freshwater biodiversity hotspot	62
Understanding the role of temperature in seasonal timing: Effects on behavioural, physiological and molecular phenotypes	55
Decoding plant‐induced transcriptomic variability and consistency in two related polyphagous mites differing in host ranges	52
Evolutionary roles of polyploidization‐derived structural variations in the phenotypic diversification of Panax species	52
Adaptive cellular evolution or cellular system drift in hares	49
Hybrid enrichment of adaptive variation revealed by genotype–environment associations in montane sedges	48
Bacterial communities in a subarctic stream network: Spatial and seasonal patterns of benthic biofilm and bacterioplankton	48
Association between parasite microbiomes and caste development and colony structure in a social trematode	47
Interspecies genome divergence is predominantly due to frequent small scale rearrangements in Eucalyptus	47
Effect of urbanization and parasitism on the gut microbiota of Darwin's finch nestlings	45
The transcriptional state and chromatin landscape of cichlid jaw shape variation across species and environments	45
Museomics Sheds Light on Evolutionary Diversity in a Critically Endangered Cockatoo Species From Wallacea	44
Genomic, morphological and physiological data support fast ecotypic differentiation and incipient speciation in an alpine diving beetle	44
The effect of divergent and parallel selection on the genomic landscape of divergence	43
Discovery of XY Sex Chromosomes in Mauremys mutica Provides Insights Into the Role of KDM6B Gene in Coexistence of Temperature‐Dependent and Genetic Sex Determination	43
Positive selection in gamete interaction proteins in Carnivora	43
Ecology Not Genetic Covariance Explains Correlated Trait Divergence During Speciation	42
Diving into the diversity of colour patterns in reef fishes	42
Evolutionary History and Rhizosphere Microbial Community Composition in Domesticated Hops (Humulus lupulus L.)	42

Long‐read sequencing in ecology and evolution: Understanding how complex genetic and epigenetic variants shape biodiversity	41
Whole‐genome resequencing confirms reproductive isolation between sympatric demes of brown trout (Salmo trutta) detected with allozymes	39
Organellar DNA continues to provide a rich source of information in the genomics era	39
Genetic Adaptation to Brackish Water and Spawning Season in European Cisco	38
Host‐pathogen‐environment interactions predict survival outcomes of adult sockeye salmon (Oncorhynchus nerka) released from fisheries	38
Hypoxia as a physiological cue and pathological stress for coral larvae	37
Extremes of snow and temperature affect patterns of genetic diversity and differentiation in the alpine butterfly Parnassius smintheus	37
A genomic assessment of the marine‐speciation paradox within the toothed whale superfamily Delphinoidea	37
DNA Methylation Dynamics Reflect Sex and Status Differences in Mortality Rates in a Polygynous Bat	37
The impacts of positive selection on genomic variation in Drosophila serrata: Insights from a deep learning approach	37
Genomic analysis of a parasite invasion: Colonization of the Americas by the blood fluke Schistosoma mansoni	36
Brazilian marine phylogeography: A literature synthesis and analysis of barriers	36
Combined Evidence Reveals the Origin of a Rapid Range Expansion Despite Retained Genetic Diversity and a Weak Founder Effect	36
On the origin and structure of haplotype blocks	36
Grassland ecosystem type drives AM fungal diversity and functional guild distribution in North American grasslands	36
Genome‐wide SNP assessment of contemporary European red deer genetic structure highlights the distinction of peripheral populations and the main admixture zones in Europe	35
Traits and tradeoffs among non‐native ectomycorrhizal fungal symbionts affect pine seedling establishment in a Hawaiian coinvasion landscape	35
Acclimatory gene expression of primed clams enhances robustness to elevated pCO2	34
Genomic divergence and introgression between cryptic species of a widespread North American songbird	34
Out of the Qinghai‐Tibet plateau: Genomic biogeography of the alpine monospecific genus Megadenia (Biscutelleae, Brassicaceae)	33
Diversification along a benthic to pelagic gradient contributes to fish diversity in the world's largest lake (Lake Baikal, Russia)	33
The effect of a temperature‐sensitive prophage on the evolution of virulence in an opportunistic bacterial pathogen	32
Phylogenetic diversity only weakly mitigates climate‐change‐driven biodiversity loss in insect communities	32
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Large effective population size masks population genetic structure in Hirondellea amphipods within the deepest marine ecosystem, the Mariana Trench	32
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Primrose homostyles: A classic case of possible balancing selection revisited	32
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Tidal gradients, fine‐scale homing and a potential cryptic ecotype of wild spawning pink salmon (Oncorhynchus gorbuscha)	31
Evolutionary ecology of denitrifying methanotrophic NC10 bacteria in the deep‐sea biosphere	31
Identification of a rapidly‐spreading triple mutant for high‐level metabolic insecticide resistance in Anopheles gambiae provides a real‐time molecular diagnostic for antimalarial intervention	31
Regulation of host gene expression by gastrointestinal tract microbiota in Chinook Salmon (Oncorhynchus tshawytscha)	31
Genome‐wide phylogeography reveals cryptic speciation in the circumglobal planktonic calcifier Limacina bulimoides	31
Limited introgression from non‐native commercial strains and signatures of adaptation in the key pollinator Bombus terrestris	31
Combined genome and transcriptome provides insight into the genetic evolution of an edible halophyte Suaeda salsa adaptation to high salinity	31
Genome‐wide variant analyses reveal new patterns of admixture and population structure in Australian dingoes	30
Microbiomes associated with avian malaria survival differ between susceptible Hawaiian honeycreepers and sympatric malaria‐resistant introduced birds	30
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Genetic mixing in conservation translocations increases diversity of a keystone threatened species, Bettongia lesueur	30
Cophylogeny and specificity between cryptic coral species (Pocillopora spp.) at Mo′orea and their symbionts (Symbiodiniaceae)	30
Satellite DNA evolution in Corvoidea inferred from short and long reads	29
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Characterizing feral swine movement across the contiguous United States using neural networks and genetic data	28
The first steps toward a global pandemic: Reconstructing the demographic history of parasite host switches in its native range	28
Demographic changes in Pleistocene sea turtles were driven by past sea level fluctuations affecting feeding habitat availability	28
Genomic variation across Chinook salmon populations reveals effects of a duplication on migration alleles and supports fine scale structure	28
Recurrent Hybridisations During Diversification of One Rhododendron Species Complex	28
When do autopolyploids need poly‐sequencing data?	28
Integrative biological analyses of responses to food deprivation reveal resilience mechanisms in sea urchin larvae	27

Genetic responses in sexual diploid and unisexual triploid goldfish (Carassius auratus) introduced into a high‐altitude environment	27
An Early‐Life Disruption of Gut Microbiota Has Opposing Effects on Parasite Resistance in Two Host Species	27
Reticulate and Hybrid Speciation is Promoted by Environmental Instability in an Indo‐Pacific Species Complex of Whistlers (Aves: Pachycephala)	27
Variation in phenotypic plasticity across age‐at‐maturity genotypes in wild Atlantic salmon	27
Heterogeneous patterns of heterozygosity loss in isolated populations of the threatened eastern barred bandicoot (Perameles gunnii)	27
Infection by the Lungworm Rhabdias pseudosphaerocephala Affects the Expression of Immune‐Related microRNAs by Its Co‐Evolved Host, the Cane Toad Rhinella marina	26
Nestling sex and behaviour determine the host preference of insect vectors in avian nests	26
Historical Lead Contamination Linked to Atmospheric Deposition is Associated With Declines in Ectomycorrhizal Diversity and Shifts in Fungal Community Composition	26
Environmental heterogeneity structures root‐associated fungal communities in Daphne arbuscula (Thymelaeaceae), a shrub adapted to extreme rocky habitats	26
Tracking population structure and phenology through time using ancient genomes from waterlogged white oak wood	26
Semi‐quantitative metabarcoding reveals how climate shapes arthropod community assembly along elevation gradients on Hawaii Island	26
Gene Expression Associated With Behaviour Manipulation in Wood Ants Infected With Larval Lancet Fluke, Dicrocoelium dendriticum	26
Convergent Evolutionary Dead‐End and Breakdown of Hard Chorion in Parental‐Egg‐Care Fish Reproductive Strategies	26
Highly Expressed Odorant Receptor Orthologs Detect the Aggregation Pheromone Lineatin in Trypodendron Ambrosia Beetles	26
Ultraconserved Elements Reveal the Relationship Between Facultative Keratinophagy and Synanthropic Evolution in Clothes Moths	26
Telomere dysfunction is associated with dark‐induced bleaching in the reef coral Stylophora pistillata	25
Environmental conditions drive zooplankton community structure in the epipelagic oceanic water of the southern Gulf of Mexico: A molecular approach	25
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Recent genetic exchanges and admixture shape the genome and population structure of the zoonotic pathogen Cryptosporidium parvum	25
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Larger, more connected societies of ants have a higher prevalence of viruses	25
Phylogeography of the blacklegged tick (Ixodes scapularis) throughout the USA identifies candidate loci for differences in vectorial capacity	25
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Approximate Bayesian Computation applied to time series of population genetic data disentangles rapid genetic changes and demographic variations in a pathogen population	24
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Sexy fingers: Pheromones in the glands of male dendrobatid frogs	24
Lineage and role in integrative taxonomy of a heterotrophic orchid complex	24
Molecular mechanisms underlying plasticity in a thermally varying environment	24
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The challenge of demonstrating contemporary natural selection on polygenic quantitative traits in the wild	24
The genomic basis of reproductive and migratory behaviour in a polymorphic salmonid	23
Evolutionary variation in gene conversion at the avian MHC is explained by fluctuating selection, gene copy numbers and life history	23
The Genetic Architecture of Local Adaptation and Reproductive Character Displacement in Scutiger boulengeri Complex (Anura: Megophryidae)	23
Comparative population genomics of manta rays has global implications for management	23
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Phylogenomics and phylogeographic model testing using convolutional neural networks reveal a history of recent admixture in the Canarian Kleinia neriifolia	23
Molecular ecology of microbiomes in the wild: Common pitfalls, methodological advances and future directions	23
Ephemeral Speciation in a New Guinean Honeyeater Complex (Aves: Melidectes)	23
Immune genotypes, immune responses, and survival in a wild bird population	23
Inferring the ecological and evolutionary determinants of community genetic diversity	23
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Evolved and Plastic Gene Expression in Adaptation of a Specialist Fly to a Novel Niche	23
Host preference explains the high endemism of ectomycorrhizal fungi in a dipterocarp rainforest	23
Plasticity for the win: Flexible transcriptional response to host plant switches in the comma butterfly (Polygonia c‐album)	23
Cryptic hybridization between the ancient lineages of Natterer's bat (Myotis nattereri)	23
Combining GWAS and population genomic analyses to characterize coevolution in a legume‐rhizobia symbiosis	23
Parental breeding decisions and genetic quality predict social structure of independent offspring	22
Phenotypic cross‐species conservation and cross‐generation directionality switching in epigenetic inheritance	22
Population genomic structure of a widespread, urban‐dwelling mammal: The eastern grey squirrel (Sciurus carolinensis)	22
DNA methylation markers of age(ing) in non‐model animals	22
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Sex chromosome heteromorphism and the Fast‐X effect in poeciliids	22
Parentage influence on gene expression under acidification revealed through single‐embryo sequencing	22
Omics to Study and Manage Aquatic Environments: A Snapshot From the AquaEcOmics Meeting (Evian‐les‐Bains, 2025)	22
Seascape genomics of coastal bottlenose dolphins along strong gradients of temperature and salinity	22
Genetic adaptation despite high gene flow in a range‐expanding population	22
Heat‐stress memory enhances the acclimation of a migratory insect pest to global warming	22
Defence by duplication: The relation between phenotypic glyphosate resistance and EPSPS gene copy number variation in Amaranthus palmeri	22
Investigating the genetic basis of vertebrate dispersal combining RNA‐seq, RAD‐seq and quantitative genetics	22
Do Snow‐Adapted Prey Facilitate Coexistence of the Sierra Nevada Red Fox With Sympatric Carnivores?	22
Longitudinal gut microbiome dynamics in relation to age and senescence in a wild animal population	22
Long‐term biogeographical processes dominate patterns of genetic diversity in a wingless grasshopper despite substantial recent habitat fragmentation	22
Shuffling between Cladocopium and Durusdinium extensively modifies the physiology of each symbiont without stressing the coral host	21
Whole‐genome sequencing illuminates multifaceted targets of selection to humic substances in Eurasian perch	21
Brettanomyces bruxellensis: Overview of the genetic and phenotypic diversity of an anthropized yeast	21
Ectoparasite presence and brood size manipulation interact to accelerate telomere shortening in nestling jackdaws	21
Revisiting old truths: The evolution of male coloration in guppies as a function of predation	21
Relic DNA obscures DNA‐based profiling of multiple microbial taxonomic groups in a river‐reservoir ecosystem	21
Seasonal dynamics of the wild rodent faecal virome	21
Wild sunflower goes viral: Citizen science and comparative genomics allow tracking the origin and establishment of invasive sunflower in the Levant	21
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Geographical distance, host evolutionary history and diet drive gut microbiome diversity of fish across the Yellow River	21
Genetic analysis reveals the putative native range and widespread double‐clonal reproduction in the invasive longhorn crazy ant	21
Genomic health is dependent on long‐term population demographic history	21
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Diet in phenotypically divergent sympatric species of African weakly electric fish (genus: Campylomormyrus)—A hybrid capture/HTS metabarcoding approach	20
Phylogeography of horseshoe bat sarbecoviruses in Vietnam and neighbouring countries. Implications for the origins of SARS‐CoV and SARS‐CoV‐2	20
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Multiple genomic solutions for local adaptation in two closely related species (sheep and goats) facing the same climatic constraints	20
Repeated Mitochondrial Capture With Limited Genomic Introgression in a Lizard Group	20
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Long live the host! Proteomic analysis reveals possible strategies for parasitic manipulation of its social host	20
Brain and antennal transcriptomes of host ants reveal potential links between behaviour and the functioning of socially parasitic colonies	20
Defence‐relevant gene expression differences in hatchlings among wild Newfoundland and farmed European and North American Atlantic salmon and their hybrids	19
Genetic legacies of mega‐landslides: Cycles of isolation and contact across flank collapses in an oceanic island	19
Social Complexity During Early Development has Long‐Term Effects on Neuroplasticity in the Social Decision‐Making Network	19
Correction to “The Opposed Forces of Differentiation and Admixture Across Glacial Cycles in the Butterfly Aglais urticae”	19
Seq’ and ARMS shall find: DNA (meta)barcoding of Autonomous Reef Monitoring Structures across the tree of life uncovers hidden cryptobiome of tropical urban coral reefs	19
Metabarcoding for biodiversity inventory blind spots: A test case using the beetle fauna of an insular cloud forest	19
Parental effects in a filamentous fungus: Phenotype, fitness and mechanism	19
Gene expression differentiation in the reproductive tissues of Drosophila willistoni subspecies and their hybrids	19
High promiscuity among females of the invasive pest species Drosophila suzukii	19
Whole genome population structure of North Atlantic kelp confirms high‐latitude glacial refugia	19
A Test of the Long‐Term Efficiency of Genetic Rescue With Drosophila melanogaster	19
Speciation patterns of related species under the hybrid zone: A case study of three sclerophyllous oaks in the east Himalaya–Hengduan Mountains	19
Repeatome evolution across space and time: Unravelling repeats dynamics in the plant genus Erythrostemon Klotzsch (Leguminosae Juss)	19
The structure of tropical bat–plant interaction networks during an extreme El Niño‐Southern Oscillation event	19
Strategies to identify and dissect trade‐offs in plants	19
Environmental DNA unveils deep phylogeographic structure of a freshwater fish	19
It is time for ancient DNA to sweat the small stuff	19
Rhizobium nodule diversity and composition are influenced by clover host selection and local growth conditions	19
Different trematode parasites in the same snail host: Species‐specific or shared microbiota?	19
Selection for Tameness in Red Junglefowl Recapitulates Genetic Loci Associated With Domestication‐Related Brain Composition	19
Fitness consequences of population bottlenecks in an invasive blowfly	19
Complex dynamics of coral gene expression responses to low pH across species	19
No Evidence That Life History Strategies Shape Within‐Body Mosaics of Ageing	19
Whole‐genome sequencing reveals fine‐scale environment‐associated divergence near the range limits of a temperate reef fish	19
Complex adaptive architecture underlies adaptation to quantitative host resistance in a fungal plant pathogen	19
Genomic architecture underlying morphological and physiological adaptation to high elevation in a songbird	19
Population genomics and sexual signals support reproductive character displacement in Uperoleia (Anura: Myobatrachidae) in a contact zone	19
Divergence of alternative sugar preferences through modulation of the expression and activity of the Gal3 sensor in yeast	19
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Pathogen invasion increases the abundance of predatory protists and their prey associations in the plant microbiome	18
Escalation by duplication: Milkweed bug trumps Monarch butterfly	18
Expression of Elongase‐ and Desaturase‐Encoding Genes Shapes the Cuticular Hydrocarbon Profiles of Honey Bees	18
Genomic, Phenotypic and Environmental Correlates of Speciation in the Midwife Toads (Alytes)	18
Age‐ and caste‐independent piRNAs in the germline and miRNA profiles linked to caste and fecundity in the ant Temnothorax rugatulus	18
Genomic and phenotypic changes associated with alterations of migratory behaviour in a songbird	18
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Social and paternal female choice for male MHC genes in golden snub‐nosed monkeys (Rhinopithecus roxellana)	18
Biodiversity Genomics Research Practices Require Harmonising to Meet Stakeholder Needs in Conservation	18
Pleistocene parades of carnivores into North America	18
Different molecular changes underlie the same phenotypic transition: Origins and consequences of independent shifts to homostyly within species	18
The faecal metabolome of black howler monkeys (Alouatta pigra) varies in response to seasonal dietary changes	18
Synthesizing environmental, epidemiological and vector and parasite genetic data to assist decision making for disease elimination	18
Fire shapes fungal guild diversity and composition through direct and indirect pathways	18
Do chromosome rearrangements fix by genetic drift or natural selection? Insights from Brenthis butterflies	18
Population Genetics and Invasion History of the European Starling Across Aotearoa New Zealand	18
Frequent Hybridisation Between Parapatric Lekking Bird‐of‐Paradise Species	18
Genomic‐based epidemiology reveals independent origins and gene flow of glyphosate resistance in Bassia scoparia populations across North America	18
Genomics reveal population structure, evolutionary history, and signatures of selection in the northern bottlenose whale, Hyperoodon ampullatus	18
Domestication and evolutionary histories of specialized gut symbionts across cephalotine ants	18
Adaptive divergence in bill morphology and other thermoregulatory traits is facilitated by restricted gene flow in song sparrows on the California Channel Islands	18
Differential temperature effects on photoperiodism in female voles: A possible explanation for declines in vole populations	17
Global flyway evolution in red knots Calidris canutus and genetic evidence for a Nearctic refugium	17
Host genotype and microbiome associations in co‐occurring clonal and non‐clonal kelp, Ecklonia radiata	17
Living with chronic infection: Persistent immunomodulation during avirulent haemoparasitic infection in a wild rodent	17
Transgressive gene expression and expression plasticity under thermal stress in a stable hybrid zone	17
Strong Bottlenecks Constrain Adaptive Coevolution in a Host–Parasite Metapopulation	17
Variable hybridization between two Lake Tanganyikan cichlid species in recent secondary contact	17
Habitat‐linked genetic variation supports microgeographic adaptive divergence in an island‐endemic bird species	17
Linking large‐scale genetic structure of three Argynnini butterfly species to geography and environment	17
Understanding Dynamic Molecular Responses Is Key to Designing Environmental Stress Experiments: A Review of Gene and Protein Expression in Cnidaria Under Stress	17
Divergent island hybrids mixed waves of ancient gene flow	17
Distinct patterns of inheritance shape life‐history traits in steelhead trout	17
High Quality Diet Enhances Immune Response and Affects Gene Expression During Viral Infection in an Insect Herbivore	17
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Tissue‐specific transcriptional patterns underlie seasonal phenotypes in honey bees (Apis mellifera)	17
Understanding stochastic and deterministic assembly processes in microbial communities along temporal, spatial and environmental scales	17
Genomic associations with poxvirus across divergent island populations in Berthelot's pipit	17
Robust Sensory Traits Across Light Habitats: Visual Signals but Not Receptors Vary in Centrarchids Inhabiting Distinct Photic Environments	17
Not All Bark Beetles Smell the Same: Population‐Level Functional Olfactory Polymorphisms in Ips typographus Pheromone Receptor ItypOR33	17
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Fifty Years of Conservation Genetics: A Personal Perspective	17
Immune gene regulation is associated with age and environmental adversity in a nonhuman primate	17
Epigenomic Changes in Ostrinia Moths Under Elevated Pupal and Adult Temperature	17
Parallel duplication and loss of aquaporin‐coding genes during the “out of the sea” transition as potential key drivers of animal terrestrialization	17
Impact of disturbance and dietary shift on gastrointestinal bacterial community and its invertebrate host system	17
Plant invasion reconstructs soil microbial assembly and functionality in coastal salt marshes	17
Expression patterns of melanin‐related genes are linked to crypsis and conspicuousness in a pumpkin toadlet	17
Evaluating the persistence and utility of five wild Vitis species in the context of climate change	17
Expression–environment associations in transcriptomic heat stress responses for a global plant lineage	17
Amazonian colonization from the Atlantic Forest: New perspectives on the connections of South American tropical forests	17
Preserving Wild Pears: Using Genomic Data to Assess Species Boundaries, Interspecific Hybridization, and Genetic Diversity to Inform Conservation	17
Evolution of Hybrid Inviability Associated With Chromosome Fusions	16
Large X‐effects are absent in torrent frogs with nascent sex chromosomes	16
Species' attributes predict the relative magnitude of ecological and genetic recovery following mass mortality	16
Coping with antagonistic predation risks: Predator‐dependent unique responses are dominant in Ceriodaphnia cornuta	16
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Does exposure to different menstrual products affect the vaginal environment?	16
Distinct routes to parallel adaptation in a mountain plant	16