Molecular Phylogenetics and Evolution

Papers
(The H4-Index of Molecular Phylogenetics and Evolution is 28. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2022-05-01 to 2026-05-01.)
ArticleCitations
Incomplete lineage sorting and hybridization underlie tree discordance in Petunia and related genera (Petunieae, Solanaceae)114
Resolving the phylogenetic relationship among recently diverged members of the rockfish subgenus Sebastosomus80
The distribution and characteristic of two transposable elements in the genome of Cydia pomonella granulovirus and codling moth67
Peering through the hedge: Multiple datasets yield insights into the phylogenetic relationships and incongruences in the tribe Lilieae (Liliaceae)54
Editorial Board52
Resolving the deep phylogeny: Implications for early adaptive radiation, cryptic, and present-day ecological diversity of Papuan microhylid frogs45
Phylogenomic insights into historical biogeography and species delimitation of African Ampelocissus (Vitaceae)44
The systematics and evolution of the Sri Lankan rainforest land snail Corilla: New insights from RADseq-based phylogenetics43
Erratum to “Disentangling historical relationships within Poeciliidae (Teleostei: Cyprinodontiformes) using ultraconserved elements” [Mol. Phylogenet. Evol. 190 (2024) 107965]39
Phylogenomics and biogeography of arid-adapted Chlamydogobius goby fishes39
Disconnecting trapdoors: Phylogenomic analyses reveal evolutionary contrasts in trapdoor spiders with intercontinental distribution (Idiopidae, Idiopinae)38
Revisiting evolutionary relationships of Antrodiaetus (Araneae, Mygalomorphae, Antrodiaetidae) using phylogenomics; implications for species diversity and biogeography of a persistent Holarctic lineag36
Species delimitation within a taxonomically complex group: An example from the genus Apodemus (Rodentia: Muridae)36
Phylogeny, population structure, and conservation genomics of Galapagos vermilion flycatchers (genus Pyrocephalus)35
Diversification and introgression in four chromosomal taxa of the Pearson’s horseshoe bat (Rhinolophus pearsoni) group34
Recent evolution of extreme sexual dimorphism in the huia (Heteralocha acutirostris; Callaeidae)33
Machine learning can be as good as maximum likelihood when reconstructing phylogenetic trees and determining the best evolutionary model on four taxon alignments32
Multiple origins, singular success: genomic evidence for past recurrent hybridization in Chenopodium album s. str. (Amaranthaceae)32
ModelRevelator: Fast phylogenetic model estimation via deep learning31
When colors mislead: Genomics and bioacoustics prompt re-classification of Asian flycatcher radiation (Aves: Niltavinae)31
Population genomics indicate three different modes of divergence and speciation with gene flow in the green-winged teal duck complex31
Hidden in the sand: Phylogenomics unravel an unexpected evolutionary history for the desert-adapted vipers of the genus Cerastes30
Maturyoshka: A maturase inside a maturase, and other peculiarities of the novel chloroplast genomes of marine euglenophytes30
Whole genome phylogenomics helps to resolve the phylogenetic position of the Zygothrica genus group (Diptera, Drosophilidae) and the causes of previous incongruences30
Mitochondrial genome and ultraconserved elements reveal a species complex within the Central American brocket deer Mazama temama (Artiodactyla: Cervidae)29
Sink or swim: Phylogenomic analysis of Baikal sculpins reveals multiple transformations to pelagic, bathybenthic, and lotic ecomorphologies29
Comprehensive taxon sampling and vetted fossils help clarify the time tree of shorebirds (Aves, Charadriiformes)28
The evolution of primate malaria parasites: A study on the origin and diversification of Plasmodium in lemurs28
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