Molecular Phylogenetics and Evolution

Papers
(The TQCC of Molecular Phylogenetics and Evolution is 10. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-07-01 to 2025-07-01.)
ArticleCitations
The distribution and characteristic of two transposable elements in the genome of Cydia pomonella granulovirus and codling moth68
Editorial Board68
Inclusivity is key to progressing coral biodiversity research: Reply to comment by Bonito et al. (2021)67
Erratum to “Disentangling historical relationships within Poeciliidae (Teleostei: Cyprinodontiformes) using ultraconserved elements” [Mol. Phylogenet. Evol. 190 (2024) 107965]67
Peering through the hedge: Multiple datasets yield insights into the phylogenetic relationships and incongruences in the tribe Lilieae (Liliaceae)59
Resolving the phylogenetic relationship among recently diverged members of the rockfish subgenus Sebastosomus58
Revisiting evolutionary relationships of Antrodiaetus (Araneae, Mygalomorphae, Antrodiaetidae) using phylogenomics; implications for species diversity and biogeography of a persistent Holarctic lineag57
Surveying keratose sponges (Porifera, demospongiae, Dictyoceratida) reveals hidden diversity of host specialist barnacles (Crustacea, Cirripedia, Balanidae)55
Diversification and introgression in four chromosomal taxa of the Pearson’s horseshoe bat (Rhinolophus pearsoni) group47
Incomplete lineage sorting and hybridization underlie tree discordance in Petunia and related genera (Petunieae, Solanaceae)44
Evolution of Potato virus X44
Providing a phylogenetic framework for trait-based analyses in brown algae: Phylogenomic tree inferred from 32 nuclear protein-coding sequences43
Population genomics indicate three different modes of divergence and speciation with gene flow in the green-winged teal duck complex43
Phylogenomic insights into historical biogeography and species delimitation of African Ampelocissus (Vitaceae)43
Machine learning can be as good as maximum likelihood when reconstructing phylogenetic trees and determining the best evolutionary model on four taxon alignments41
When colors mislead: Genomics and bioacoustics prompt re-classification of Asian flycatcher radiation (Aves: Niltavinae)38
Phylogenomics and biogeography of arid-adapted Chlamydogobius goby fishes36
The systematics and evolution of the Sri Lankan rainforest land snail Corilla: New insights from RADseq-based phylogenetics36
Resolving the deep phylogeny: Implications for early adaptive radiation, cryptic, and present-day ecological diversity of Papuan microhylid frogs34
Recent evolution of extreme sexual dimorphism in the huia (Heteralocha acutirostris; Callaeidae)32
Phylogeny and historical biogeography of the pantropical genus Parkia (Leguminosae, Caesalpinioideae, mimosoid clade)31
Disconnecting trapdoors: Phylogenomic analyses reveal evolutionary contrasts in trapdoor spiders with intercontinental distribution (Idiopidae, Idiopinae)31
ModelRevelator: Fast phylogenetic model estimation via deep learning31
Hidden in the sand: Phylogenomics unravel an unexpected evolutionary history for the desert-adapted vipers of the genus Cerastes30
Maturyoshka: A maturase inside a maturase, and other peculiarities of the novel chloroplast genomes of marine euglenophytes30
Repeat-based phylogenomics shed light on unclear relationships in the monocentric genus Juncus L. (Juncaceae)29
Genomic phylogeography of the White-crowned Manakin Pseudopipra pipra (Aves: Pipridae) illuminates a continental-scale radiation out of the Andes27
The evolution of primate malaria parasites: A study on the origin and diversification of Plasmodium in lemurs27
Phylogenomics and taxon-rich phylogenies of new and historical specimens shed light on the systematics of Hypnea (Cystocloniaceae, Rhodophyta)27
Molecular phylogenetics of sub-Saharan African natricine snakes, and the biogeographic origins of the Seychelles endemic Lycognathophis seychellensis27
Phylotranscriptomic relationships of the Oophila clade of green algae associated to amphibian egg masses27
Phylogenomics and divergence pattern of Polygonatum (Asparagaceae: Polygonateae) in the north temperate region26
Evolution, range formation and a revised taxonomy of the disjunctly distributed European members of Astragalus sect. Caprini, an intricate group including highly endangered species of dry grasslands26
Redefining Chlorobotryaceae as one of the principal and most diverse lineages of eustigmatophyte algae25
Plastid-nuclear coevolution of ribosomal protein genes in papilionoid legumes25
Genomic phylogeography illuminates deep cyto-nuclear discordances in midwife toads (Alytes)25
Corrigendum to “Phylogeography, hybridization, and species discovery in the Etheostoma nigrum complex (Percidae: Etheostoma: Boleosoma)” [Mol. Phylogenet. Evol. 178 (2023) 107645]24
Whole genome phylogenomics helps to resolve the phylogenetic position of the Zygothrica genus group (Diptera, Drosophilidae) and the causes of previous incongruences24
Phylogenomic reconstruction of Solenogastres (Mollusca, Aplacophora) informs hypotheses on body size evolution24
Phylogenomics and biogeography of sawflies and woodwasps (Hymenoptera, Symphyta)24
Phylogenetics and the evolution of terrestriality in mudskippers (Gobiidae: Oxudercinae)24
Comprehensive taxon sampling and vetted fossils help clarify the time tree of shorebirds (Aves, Charadriiformes)23
Temporal and spatial diversification along the Amazonia-Cerrado transition in Neotropical treefrogs of the Boana albopunctata species group23
Genomic SNPs resolve the phylogeny of an ancient amphibian island radiation from the Seychelles23
Scaling the high latitudes: evolution, diversification, and dispersal of Coryphella nudibranchs across the Northern Hemisphere23
Substrate specialisation drives an unexpectedly diverse radiation in barking geckos (Ptenopus: Gekkonidae)23
Nuclear phylogenomics of Eperua (Leguminosae) highlights the role of habitat and morphological lability in dispersal and diversification across Amazonia and in the Caatinga-Cerrado ecotone23
Geological events and climate change drive diversification and speciation of mute cicadas in eastern continental Asia23
Gauging ages of tiger swallowtail butterflies using alternate SNP analyses23
Phylogeny and historical biogeography of neotropical catfishes Trichomycterus (Siluriformes: Trichomycteridae) from eastern Brazil22
Corrigendum to “Molecular systematics and global phylogeography of angel sharks (genus Squatina)” [Mol. Phylogenetics Evol. 54 (2010) 395–404]22
Cenozoic colonisation of the Indian Ocean region by the Australian freshwater-originating glassperch family Ambassidae (Teleostei)22
Phylogenetic placement and species delimitation of the crab spider genus Phrynarachne (Araneae: Thomisidae) from China22
Recurrent founder-event speciation across the Mediterranean likely shaped the species diversity and geographic distribution of the freshwater snail genus Mercuria Boeters, 1971 (Caenogastropoda: Hydro22
Ocean crossers: A tale of disjunctions and speciation in the dwarf-fruticose Lichina (lichenized Ascomycota)22
Interspecific gene flow obscures phylogenetic relationships in an important insect pest species complex22
Molecular phylogeny of deep-sea blind lobsters of the family Polychelidae (Decapoda: Polychelida), with implications for the origin and evolution of these “living fossils”22
Dynamics and timing of diversification events of ciliated eukaryotes from a large phylogenomic perspective22
Editorial Board21
Phylogenetic relationships and historical biogeography of silkmoths (Lepidoptera: Bombycidae) suggest an origin in Southern Gondwana21
Deconstructing Difflugia: The tangled evolution of lobose testate amoebae shells (Amoebozoa: Arcellinida) illustrates the importance of convergent evolution in protist phylogeny21
Shining new light on naupliar eyes: A novel molecular phylogeny for Pleuromamma (Family: Metridinidae) and the characterization of luciferase and opsin expression21
Phylogenetic relationships of the Geoplaninae land planarians (Platyhelminthes, Tricladida) assessed with a total evidence approach, with the description of a new species of Gigantea21
Congruent patterns of cryptic cladogenesis revealed using RADseq and Sanger sequencing in a velvet worm species complex (Onychophora: Peripatopsidae: Peripatopsis sedgwicki)21
Diversity of Brachionus plicatilis species complex (Rotifera) in inland saline waters from China: Presence of a new mitochondrial clade on the Tibetan Plateau21
SNP-based phylogenomic inference in Holarctic ground squirrels (Urocitellus)21
Molecular phylogenetics of the fresh water sleepers Odontobutis (Gobiiformes: Odontobutidae) and its implications on biogeography of freshwater ichthyofauna of East Asia21
Plastid phylogenomic analyses of Fagales reveal signatures of conflict and ancient chloroplast capture21
A genomic survey of LINE elements in Pipidae aquatic frogs shed light on Rex-elements evolution in these genomes21
A new bunting species in South China revealed by an integrative taxonomic investigation of the Emberiza godlewskii complex (Aves, Emberidae)20
The hybridization origin of the Chinese endemic herb genus Notopterygium (Apiaceae): Evidence from population genomics and ecological niche analysis20
The phylogeny and evolutionary ecology of hoverflies (Diptera: Syrphidae) inferred from mitochondrial genomes20
Genomic insights into the biogeography and evolution of Galápagos iguanas20
A global phylogeny of the deep-sea gastropod family Scaphandridae (Heterobranchia: Cephalaspidea): Redefinition and generic classification20
Geological and climatic influences on population differentiation of the Phrynocephalus vlangalii species complex (Sauria: Agamidae) in the northern Qinghai-Tibet Plateau20
Plastid phylogenomics of the Sansevieria Clade of Dracaena (Asparagaceae) resolves a recent radiation20
Phylogeny and secondary sexual trait evolution in Schizocosa wolf spiders (Araneae, Lycosidae) shows evidence for multiple gains and losses of ornamentation and species delimitation uncertainty20
Gone with Gondwana: Amphipod diversification in freshwaters followed the breakup of the supercontinent20
A phylotranscriptome study using silica gel-dried leaf tissues produces an updated robust phylogeny of Ranunculaceae19
Phylogenomics AND biogeography of Castanea (chestnut) and Hamamelis (witch-hazel) – Choosing between RAD-seq and Hyb-Seq approaches19
Molecular evolutionary analyses of tooth genes support sequential loss of enamel and teeth in baleen whales (Mysticeti)19
Editorial Board19
Novel mating-type-associated genes and gene fragments in the genomes of Mycosphaerellaceae and Teratosphaeriaceae fungi19
Multiple independent losses of cell mouth in phylogenetically distant endosymbiotic lineages of oligohymenophorean ciliates: A lesson from Clausilocola19
Molecular phylogeny, historical biogeography, and classification of Pseudocoladenia butterflies (Lepidoptera: Hesperiidae)19
A multi-gene phylogenetic analysis of the leafhopper subfamily Typhlocybinae (Hemiptera: Cicadellidae) challenges the traditional view of the evolution of wing venation19
Phylogenomics resolves ambiguous relationships within Aciculata (Errantia, Annelida)19
Phylogeny and biogeography of harmochirine jumping spiders (Araneae: Salticidae)19
Study of epiphytic non-geniculate coralline algae Reveals an Evolutionarily significant Genus, Pseudoderma gen. nov. (Lithophylloideae, Corallinophycidae)19
Phylogenomic analysis of Stylops reveals the evolutionary history of a Holarctic Strepsiptera radiation parasitizing wild bees19
Editorial Board19
Biogeography, reproductive biology and phylogenetic divergence within the Fungiidae (mushroom corals)19
Rearranging and completing the puzzle: Phylogenomic analysis of bark beetles Dendroctonus reveals new hypotheses about genus diversification18
A new species of Populus and the extensive hybrid speciation arising from it on the Qinghai-Tibet Plateau18
The Sela macaque (Macaca selai) is a distinct phylogenetic species that evolved from the Arunachal macaque following allopatric speciation18
A phylogenomic approach resolves the backbone of Prunus (Rosaceae) and identifies signals of hybridization and allopolyploidy18
Adaptive radiation and speciation in Rhipicephalus ticks: A medley of novel hosts, nested predator-prey food webs, off-host periods and dispersal along temperature variation gradients18
Deeply divergent freshwater fish species within a single river system in central Sulawesi18
Macroevolutionary analyses point to a key role of hosts in diversification of the highly speciose eriophyoid mite superfamily18
Out of the desert: Paleoclimatic changes drove the diversification of arid-adapted Ocymyrmex ants in southern Africa18
Editorial Board18
Population structure in Mixornis tit-babblers across Sunda Shelf matches interfluvia of paleo-rivers18
New multilocus phylogeny reorganises the family Macrobiotidae (Eutardigrada) and unveils complex morphological evolution of the Macrobiotus hufelandi group18
Endogean habits drove cryptic diversification in Appalachian Lathrobium Gravenhorst (Coleoptera, Staphylinidae)18
Under the hood: Phylogenomics of hooded tick spiders (Arachnida, Ricinulei) uncovers discordance between morphology and molecules18
Corrigendum to “Molecular phylogeny and trait evolution in an ancient terrestrial arthropod lineage: Systematic revision and implications for ecological divergence (Collembola, Tomocerinae)” [Mol. Phy17
Integrative approach to species delimitation in Rhizophydiales: Novel species of Angulomyces, Gorgonomyces, and Terramyces from northern Thailand17
Exceptional levels of species discovery ameliorate inferences of the biogeography and diversification of an Afrotropical catfish family17
Expanding Acutuncus: Phylogenetics and morphological analyses reveal a considerably wider distribution for this tardigrade genus17
A story of vicariance? how the geology of oceanic archipelagos influenced the evolutionary history of endemic damselflies17
Identifying a potentially invasive population in the native range of a species: The enlightenment from the phylogeography of the yellow spotted stink bug, Erthesina fullo (Hemiptera: Pentatomidae)17
Explosion of goby fish diversity at the Eocene-Oligocene transition17
Editorial Board17
Novel oceanic cyanobacterium isolated from Bangaram island with profound acid neutralizing ability is proposed as Leptolyngbya iicbica sp. nov. strain LK17
Following the aridity: Historical biogeography and diversification of the Philodromidae spider genus Petrichus in South America17
Diversification of the sleepers (Gobiiformes: Gobioidei: Eleotridae) and evolution of the root gobioid families17
Peeling back the layers: First phylogenomic insights into the Ledebouriinae (Scilloideae, Asparagaceae)17
Phylogeny of Micronesian emperor fishes and evolution of trophic types16
Genomic data provide a robust phylogeny backbone for Rhodiola L. (Crassulaceae) and reveal extensive reticulate evolution during its rapid radiation16
Large-scale phylogenomics of the genus Macrostomum (Platyhelminthes) reveals cryptic diversity and novel sexual traits16
Phylogeny and evolution of dissimilatory sulfite reduction in prokaryotes16
How many long branch orders occur in Chelicerata? Opposing effects of Palpigradi and Opilioacariformes on phylogenetic stability16
Phylogenetic relationships and the origin of New World soles (Teleostei: Pleuronectiformes: Achiridae): The role of estuarine habitats16
New evidence of consistency between phylogeny and morphology for two taxa in ciliated protists, the subclasses Oligotrichia and Choreotrichia (Protista, Ciliophora)16
Single cell transcriptomics reveals UAR codon reassignment in Palmarella salina (Metopida, Armophorea) and confirms Armophorida belongs to APM clade16
Plastid phylogenomic analyses of the Selaginella sanguinolenta group (Selaginellaceae) reveal conflict signatures resulting from sequence types, outlier genes, and pervasive RNA editing16
Imperiled wanderlust lichens in steppe habitats of western North America comprise geographically structured mycobiont lineages and a reversal to sexual reproduction within this asexual clade16
Multi-locus phylogeny with dense Guiana Shield sampling supports new suprageneric classification of the neotropical three-barbeled catfishes (Siluriformes: Heptapteridae)16
Phylogenomics and historical biogeography of West Indian Rock Iguanas (genus Cyclura)16
Integrative phylogenetic, phylogeographic and morphological characterisation of the Unio crassus species complex reveals cryptic diversity with important conservation implications16
Phylogenomic loci define the generic boundaries of Gochnatieae and improve resolution at the species level in Moquiniastrum (Compositae)15
Genomic and phenotypic characterization of Thermosynechococcus-like strains reveals eight species within the genus Thermosynechococcus and a novel genus Parathermosynechococcus gen. nov.15
Plastid phylogenomics of the tribe potentilleae (Rosaceae)15
Molecular phylogeny, classification, biogeography and diversification patterns of a diverse group of moths (Geometridae: Boarmiini)15
Ultraconserved elements-based phylogenomic systematics of the snake superfamily Elapoidea, with the description of a new Afro-Asian family15
Ecological speciation by sympatric host shifts in a clade of herbivorous sea slugs, with introgression and localized mitochondrial capture between species15
A thorny tale: The origin and diversification of Cirsium (Compositae)15
Out of Asia: Intercontinental dispersals after the Eocene-Oligocene transition shaped the zoogeography of Limenitidinae butterflies (Lepidoptera: Nymphalidae)15
Phylogeny, origin, and dispersal of Dubyaea (Asteraceae) based on Hyb-Seq data15
Phylogenetic systematics of Yphthimoides Forster, 1964 and related taxa, with notes on the biogeographical history of Yphthimoides species15
The performance of outgroup-free rooting under evolutionary radiations15
Nuclear phylogenies and genomics of a contact zone establish the species rank of Podarcis lusitanicus (Squamata, Lacertidae)15
A model of hybrid speciation process drawn from three new poplar species originating from distant hybridization between sections15
Evolution of andrenine bees reveals a long and complex history of faunal interchanges through the Americas during the Mesozoic and Cenozoic14
In the land of the blind: Exceptional subterranean speciation of cryptic troglobitic spiders of the genus Tegenaria (Araneae: Agelenidae) in Israel14
Mixed, not stirred: Genomic data confirm the first case of interspecific hybridization in planarian triclads (Platyhelminthes: Tricladida) and raise questions about a possibly novel form of hybrid spe14
Phylogenomic conflict analyses of the plastid and mitochondrial genomes via deep genome skimming highlight their independent evolutionary histories: A case study in the cinquefoil genus Potentilla sen14
Independent recruitment of FRUITFULL-like transcription factors in the convergent origins of vernalization-responsive grass flowering14
Phylogenetic revision of the lichenized family Gomphillaceae (Ascomycota: Graphidales) suggests post-K–Pg boundary diversification and phylogenetic signal in asexual reproductive structures14
Exclusion of fast evolving genes or fast evolving sites produces different archaean phylogenies14
Molecular phylogenetics of the Clupeiformes based on exon-capture data and a new classification of the order14
Phylogenetic origin of dioecious Callicarpa (Lamiaceae) species endemic to the Ogasawara Islands revealed by chloroplast and nuclear whole genome analyses14
Skeleton phylogeny reconstructed with transcriptomes for the tribe Drosophilini (Diptera: Drosophilidae)14
A global blueberry phylogeny: Evolution, diversification, and biogeography of Vaccinieae (Ericaceae)14
Population genomics of the southern giraffe14
Phylogenomic analysis, reclassification, and evolution of South American nemesioid burrowing mygalomorph spiders14
Paraphyly and cryptic diversity unveils unexpected challenges in the “naked lichens” (Calvitimela, Lecanoromycetes, Ascomycota)14
Patterns of diversification of the operculate land snail genus Cyclophorus (Caenogastropoda: Cyclophoridae) on the Ryukyu Islands, Japan13
A taxonomist‘s nightmare – Cryptic diversity in Caribbean intertidal arthropods (Arachnida, Acari, Oribatida)13
Hidden species diversity and mito-nuclear discordance within the Mediterranean cone snail, Lautoconus ventricosus13
Evaluating species boundaries using coalescent delimitation in pine-killing Monochamus (Coleoptera: Cerambycidae) sawyer beetles13
A supermatrix phylogeny of the world’s bees (Hymenoptera: Anthophila)13
Plastome structure, evolution, and phylogeny of Selaginella13
Phylogenomics and diversification drivers of the Eastern Asian – Eastern North American disjunct Podophylloideae13
Integrative taxonomy in a rapid speciation group associated with mating system transition: A case study in the Primula cicutariifolia complex13
Out of southern Africa: Origins and cryptic speciation in Chamaeleo, the most widespread chameleon genus13
Phylogenomic evolutionary insights in the fern family Gleicheniaceae13
When lizards shift to a more plant-based lifestyle: The macroevolution of mutualistic lizard-plant-interactions (Squamata: Sauria/Lacertilia)13
Diversification and evolutionary history of the African laminated-toothed rats (Rodentia, Otomyini)13
Molecular systematics and phylogenetics of the spider genus Mastigusa Menge, 1854 (Araneae, Cybaeidae)13
Historical DNA solves century-old mystery on sessility in freshwater gastropods13
Phylogenomic analyses of hamsters (Cricetinae) inferred from GBS data and mitochondrial genomes13
Global diversification and evolutionary history of onchidiid slugs (Gastropoda, Pulmonata)13
Integrative taxonomy of the subfamily Orbioninae (Crustacea: Isopoda) based on mitochondrial and nuclear data with evidence that supports Epicaridea as a suborder13
Phylogenomics and morphology of Celmisiinae (Asteraceae: Astereae): Taxonomic and evolutionary implications13
Phylogenomic resolution of the Ceratitis FARQ complex (Diptera: Tephritidae)13
Australia’s hidden radiation: Phylogenomics analysis reveals rapid Miocene radiation of blindsnakes13
A comprehensive molecular phylogeny of the genus Sylvirana (Anura: Ranidae) highlights unrecognized diversity, revised classification and historical biogeography12
Intra-island patterns of cryptic diversity within an oceanic island: Insights from the differentiation of Schizidium Verhoeff, 1901 (Oniscidea, Armadillidiidae) within Cyprus, with descriptions of two12
A new molecular phylogeny for the Tanypodinae (Diptera: Chironomidae) places the Australian diversity in a global context12
Out of the ancient lake: Multiple riverine colonizations and diversification of the freshwater snails in the genus Semisulcospira around Lake Biwa12
Corrigendum to “Unravelling unknown cyanobacteria diversity linked with HCN production” [Mol. Phylogenet. Evol. 166 (2022) 107322]12
Multi-locus phylogeny and species delimitations of the striped-back shrew group (Eulipotyphla: Soricidae): Implications for cryptic diversity, taxonomy and multiple speciation patterns12
Whole genome sequencing and comparative genomics analysis of Pectobacterium carotovorum identifies key pathogenic genes12
Abundant incongruence in a clade endemic to a biodiversity hotspot: Phylogenetics of the scrub mint clade (Lamiaceae)12
The phylogeny and global biogeography of Primulaceae based on high-throughput DNA sequence data12
The apicoplast of Haemoproteus columbae: A comparative study of this organelle genome in Haemosporida12
Genomic data reveal local endemism in Southern California Rubber Boas (Serpentes: Boidae, Charina) and the critical need for enhanced conservation actions12
Editorial Board12
Whole-genome characterization and comparative genomics of a novel freshwater cyanobacteria species: Pseudanabaena punensis11
Horizontally transferred glycoside hydrolase 26 may aid hemipteran insects in plant tissue digestion11
The phylogenomics and evolutionary dynamics of the organellar genomes in carnivorous Utricularia and Genlisea species (Lentibulariaceae)11
Phylogenomics reveals ancient and contemporary gene flow contributing to the evolutionary history of sea ducks (Tribe Mergini)11
Two new tardigrade genera from New Zealand’s Southern Alp glaciers display morphological stasis and parallel evolution11
Unique environmental Symbiodiniaceae diversity at an isolated island in the northwestern Pacific11
Phylogenomic systematics of the spotted skunks (Carnivora, Mephitidae, Spilogale): Additional species diversity and Pleistocene climate change as a major driver of diversification11
Disentangling conflicting molecular phylogenetic signals in nuclear and plastid DNA of the western Eurasian-Mediterranean grass genus Cynosurus and its relatives (Poaceae subtribes Cynosurinae and Par11
Genome skimming elucidates the evolutionary history of Octopoda11
Molecular phylogeny and divergence time of Harpalyce (Leguminosae, Papilionoideae), a lineage with amphitropical diversification in seasonally dry forests and savannas11
Monophyly of diverse Bigyromonadea and their impact on phylogenomic relationships within stramenopiles11
Phylogeny and evolution of morphological structures in a highly diverse lineage of fruiting-body-forming amoebae, order Trichiales (Myxomycetes, Amoebozoa)11
African lates perches (Teleostei, Latidae, Lates): Paraphyly of Nile perch and recent colonization of Lake Tanganyika11
Deciphering phylogenetic relationships of and delimiting species boundaries within the controversial ciliate genus Conchophthirus using an integrative morpho-evo approach11
Biogeography and evolution of social parasitism in Australian Myrmecia bulldog ants revealed by phylogenomics11
Phylogenomic analyses of ochrophytes (stramenopiles) with an emphasis on neglected lineages11
Phylogenomics of Anguis and Pseudopus (Squamata, Anguidae) indicates Balkan-Apennine mitochondrial capture associated with the Messinian event11
Evolution of the Sabulina verna group (Caryophyllaceae) in Europe: A deep split, followed by secondary contacts, multiple allopolyploidization and colonization of challenging substrates11
Phylogenomics and genome size evolution in Amomum s. s. (Zingiberaceae): Comparison of traditional and modern sequencing methods11
Phylogeny, character evolution, and biogeography of the fern genus Bolbitis (Dryopteridaceae)11
Evolving in the darkness: Phylogenomics of Sinocyclocheilus cavefishes highlights recent diversification and cryptic diversity11
Diversity of Wolbachia infection and its influence on mitochondrial DNA variation in the diamondback moth, Plutella xylostella11
Cytonuclear discordance in the crowned-sparrows, Zonotrichia atricapilla and Zonotrichia leucophrys11
A multi-gene phylogeny of the Asian kukri snakes (Oligodon Fitzinger, 1826): Sharpening the blade of the second largest serpent radiation (Reptilia: Squamata: Colubridae)10
The genome of the lowland anoa (Bubalus depressicornis) illuminates the origin of river and swamp buffalo10
Diversification dynamics of a common deep-sea octocoral family linked to the Paleocene-Eocene thermal maximum10
Taxonomic insights and evolutionary history in East Asian terrestrial slugs of the genus Meghimatium10
Editorial Board10
Molecular phylogenetics, speciation, and long distance dispersal in tardigrade evolution: A case study of the genus Milnesium10
Species delimitation using genomic data to resolve taxonomic uncertainties in a speciation continuum of pelagic seabirds10
A subfunctionalisation model of gene family evolution predicts balanced tree shapes10
Diversification in the mountains: Evolutionary history and molecular phylogeny of Anatolian rock lizards10
Phylogenomic and morphological evidence supports the reinstatement of the bamboo genus Clavinodum from Oligostachyum (Poaceae: Bambusoideae)10
Hyper-Cryptic radiation of a tropical montane plant lineage10
Species divergence and phylogeography of Corylus heterophylla Fisch complex (Betulaceae): Inferred from molecular, climatic and morphological data10
Phylogenetics and an updated taxonomic status of the Tamarins (Callitrichinae, Cebidae)10
In and out: Evolution of viral sequences in the mitochondrial genomes of legumes (Fabaceae)10
Phylogenetic relationships, genetic diversity and biogeography of menhadens, genus Brevoortia (Clupeiformes, Clupeidae)10
Editorial Board10
Phylogeography of recent Plesiastrea (Scleractinia: Plesiastreidae) based on an integrated taxonomic approach10
Editorial Board10
Phylogenomic insights into the historical biogeography, character-state evolution, and species diversification rates of Cypripedioideae (Orchidaceae)10
Biome conservatism prevailed in repeated long-distance colonization of Madagascar’s mountains by Helichrysum (Compositae, Gnaphalieae)10
Plastomes in the holoparasitic family Balanophoraceae: Extremely high AT content, severe gene content reduction, and two independent genetic code changes10
Editorial Board10
Phylogenomics and species delimitation of an abundant and little-studied Amazonian forest spiny rat10
An ultraconserved element probe set for velvet worms (Onychophora)10
Interpreting phylogenetic conflict: Hybridization in the most speciose genus of lichen-forming fungi10
Plastid phylogenomics improves resolution of phylogenetic relationship in the Cheirostylis and Goodyera clades of Goodyerinae (Orchidoideae, Orchidaceae)10
The phylogeny and divergence times of leaf-mining flies (Diptera: Agromyzidae) from anchored phylogenomics10
Evolutionary history of the Pelasgus minnows (Teleostei: Leuciscidae), an ancient endemic genus from the Balkan Peninsula10
Systematic position of the Clicking Frog (Kassinula Laurent, 1940), the problem of chimeric sequences and the revised classification of the family Hyperoliidae10
The role of introgressive hybridization in shaping the geographically isolated gene pools of wax palm populations (genus Ceroxylon)10
Phylogeny and time scale of diversification in the fossil-rich sunfishes and black basses (Teleostei: Percomorpha: Centrarchidae)10
Population connectivity across a highly fragmented distribution: Phylogeography of the Chalcophaps doves10
Phylogenomic workflow for uncultivable microbial eukaryotes using single-cell RNA sequencing − A case study with planktonic ciliates (Ciliophora, Oligotrichea)10
Phylogenomics resolves the puzzling phylogeny of banded newts (genus Ommatotriton)10
Molecular phylogenetics reveals the evolutionary history of marine fishes (Actinopterygii) endemic to the subtropical islands of the Southwest Pacific10
Convergent evolution in nuclear and mitochondrial OXPHOS subunits underlies the phylogenetic discordance in deep lineages of Squamata10
Out of the Himalaya-Hengduan Mountains: Phylogenomics, biogeography and diversification of Polygonatum Mill. (Asparagaceae) in the Northern Hemisphere10
Jumping through hoops: Structural rearrangements and accelerated mutation rates on Dendrodorididae (Mollusca: Nudibranchia) mitogenomes rumble their evolution10
0.24196887016296