Molecular Phylogenetics and Evolution

Article	Citations
Freshwater mussels (Bivalvia: Unionidae) from the rising sun (Far East Asia): phylogeny, systematics, and distribution	68
Phylogenetic relationships and chloroplast capture in the Amelanchier-Malacomeles-Peraphyllum clade (Maleae, Rosaceae): Evidence from chloroplast genome and nuclear ribosomal DNA data using genome ski	66
An enhanced target-enrichment bait set for Hexacorallia provides phylogenomic resolution of the staghorn corals (Acroporidae) and close relatives	62
Formally described species woefully underrepresent phylogenetic diversity in the common lichen photobiont genus Trebouxia (Trebouxiophyceae, Chlorophyta): An impetus for developing an integrated taxon	50
Is dispersal mode a driver of diversification and geographical distribution in the tropical plant family Melastomataceae?	49
Backbone phylogeny and evolution of Apioideae (Apiaceae): New insights from phylogenomic analyses of plastome data	47
Phylogeny and divergence time estimation of the walnut family (Juglandaceae) based on nuclear RAD-Seq and chloroplast genome data	46
Phylogenomics of Gesneriaceae using targeted capture of nuclear genes	46
Phylogenomics of the genus Tursiops and closely related Delphininae reveals extensive reticulation among lineages and provides inference about eco-evolutionary drivers	42
A large-scale systematic framework of Chinese snakes based on a unified multilocus marker system	42
New multilocus phylogeny reorganises the family Macrobiotidae (Eutardigrada) and unveils complex morphological evolution of the Macrobiotus hufelandi group	42
Plastid phylogenomic analyses of Fagales reveal signatures of conflict and ancient chloroplast capture	40
Under the rug: Abandoning persistent misconceptions that obfuscate organelle evolution	40
Phylogeny and classification of Odonata using targeted genomics	39
Molecular phylogeny, historical biogeography and revised classification of andrenine bees (Hymenoptera: Andrenidae)	38
Radiation of the coralline red algae (Corallinophycidae, Rhodophyta) crown group as inferred from a multilocus time-calibrated phylogeny	36
Reconstructing phylogenetic relationships based on repeat sequence similarities	35
Mitogenomics reveals phylogenetic relationships of Arcoida (Mollusca, Bivalvia) and multiple independent expansions and contractions in mitochondrial genome size	34
Parachute geckos free fall into synonymy: Gekko phylogeny, and a new subgeneric classification, inferred from thousands of ultraconserved elements	34
A genomic perspective on an old question: Salmo trouts or Salmo trutta (Teleostei: Salmonidae)?	34
Utility of targeted sequence capture for phylogenomics in rapid, recent angiosperm radiations: Neotropical Burmeistera bellflowers as a case study	34
New insights into the phylogeny and evolution of lady beetles (Coleoptera: Coccinellidae) by extensive sampling of genes and species	33
Ripe for reassessment: A synthesis of available molecular data for the speciose diatom family Bacillariaceae	33
Phylogenomic relationships and character evolution of the grape family (Vitaceae)	32
Supermatrix phylogeny resolves goby lineages and reveals unstable root of Gobiaria	32

A novel reference dated phylogeny for the genus Spodoptera Guenée (Lepidoptera: Noctuidae: Noctuinae): new insights into the evolution of a pest-rich genus	32
Combining genomic, phenotypic and Sanger sequencing data to elucidate the phylogeny of the two-clawed spiders (Dionycha)	31
Phylogenomics of Ichneumonoidea (Hymenoptera) and implications for evolution of mode of parasitism and viral endogenization	31
A phylogenomic approach resolves the backbone of Prunus (Rosaceae) and identifies signals of hybridization and allopolyploidy	31
Larger, unfiltered datasets are more effective at resolving phylogenetic conflict: Introns, exons, and UCEs resolve ambiguities in Golden-backed frogs (Anura: Ranidae; genus Hylarana)	31
Out of the Himalaya-Hengduan Mountains: Phylogenomics, biogeography and diversification of Polygonatum Mill. (Asparagaceae) in the Northern Hemisphere	30
Phylogenomics reveals convergent evolution of red-violet coloration in land plants and the origins of the anthocyanin biosynthetic pathway	30
Phylogenomic analyses recover a clade of large-bodied decapodiform cephalopods	30
Resolving phylogeny and polyploid parentage using genus-wide genome-wide sequence data from birch trees	28
Biogeographic diversification of Mahonia (Berberidaceae): Implications for the origin and evolution of East Asian subtropical evergreen broadleaved forests	28
Phylogenomics and biogeography of Catalpa (Bignoniaceae) reveal incomplete lineage sorting and three dispersal events	28
Biogeography of the cyanobacterium Raphidiopsis (Cylindrospermopsis) raciborskii: Integrating genomics, phylogenetic and toxicity data	28
Phylogenomic data reveal reticulation and incongruence among mitochondrial candidate species in Dusky Salamanders (Desmognathus)	27
A phylogenomic supermatrix of Galliformes (Landfowl) reveals biased branch lengths	27
Extensive cryptic diversity in the widely distributed Polysiphonia scopulorum (Rhodomelaceae, Rhodophyta): Molecular species delimitation and morphometric analyses	26
Chloroplast phylogenomics and character evolution of eastern Asian Astragalus (Leguminosae): Tackling the phylogenetic structure of the largest genus of flowering plants in Asia	26
Phylogenomic analyses based on genome-skimming data reveal cyto-nuclear discordance in the evolutionary history of Cotoneaster (Rosaceae)	26
Implications of plastome evolution in the true lilies (monocot order Liliales)	25
More is needed—Thousands of loci are required to elucidate the relationships of the ‘flowers of the sea’ (Sabellida, Annelida)	25
Plastomes from tribe Plantagineae (Plantaginaceae) reveal infrageneric structural synapormorphies and localized hypermutation for Plantago and functional loss of ndh genes from Littorella	25
Collapsing dubiously resolved gene-tree branches in phylogenomic coalescent analyses	24
Large-scale phylogenomic analysis provides new insights into the phylogeny of the class Oligohymenophorea (Protista, Ciliophora) with establishment of a new subclass Urocentria nov. subcl	23
Data curation and modeling of compositional heterogeneity in insect phylogenomics: A case study of the phylogeny of Dytiscoidea (Coleoptera: Adephaga)	23
Tempo and mode of evolution of oryzomyine rodents (Rodentia, Cricetidae, Sigmodontinae): A phylogenomic approach	22
Phylogenomics, divergence time estimation and trait evolution provide a new look into the Gracilariales (Rhodophyta)	22
How mitonuclear discordance and geographic variation have confounded species boundaries in a widely studied snake	22
Genomic analyses reveal two species of the matamata (Testudines: Chelidae: Chelus spp.) and clarify their phylogeography	22
Phylogenomics of braconid wasps (Hymenoptera, Braconidae) sheds light on classification and the evolution of parasitoid life history traits	22
Phylogenomic framework of the IRLC legumes (Leguminosae subfamily Papilionoideae) and intercontinental biogeography of tribe Wisterieae	22
Plastome-based phylogenomics resolves the placement of the sanguinolenta group in the spikemoss of lycophyte (Selaginellaceae)	21
Phylotranscriptomic evidence for pervasive ancient hybridization among Old World salamanders	21
A combined approach of mitochondrial DNA and anchored nuclear phylogenomics sheds light on unrecognized diversity, phylogeny, and historical biogeography of the torrent frogs, genus Amolops (Anura: Ra	21
Comprehensive taxon sampling and vetted fossils help clarify the time tree of shorebirds (Aves, Charadriiformes)	21
Phylogenomics of manakins (Aves: Pipridae) using alternative locus filtering strategies based on informativeness	21
Phylogeny and time scale of diversification in the fossil-rich sunfishes and black basses (Teleostei: Percomorpha: Centrarchidae)	21
Diversification history of clown tree frogs in Neotropical rainforests (Anura, Hylidae, Dendropsophus leucophyllatus group)	20
A taxonomist‘s nightmare – Cryptic diversity in Caribbean intertidal arthropods (Arachnida, Acari, Oribatida)	20
Revealing new sponge-associated cyanobacterial diversity: Novel genera and species	20
An alpine grasshopper radiation older than the mountains, on Kā Tiritiri o te Moana (Southern Alps) of Aotearoa (New Zealand)	20
Evolutionary biogeography of the reef-building coral genus Galaxea across the Indo-Pacific ocean	20
Sequential colonization of oceanic archipelagos led to a species-level radiation in the common chaffinch complex (Aves: Fringilla coelebs)	20
Polyploidy in gymnosperms – Insights into the genomic and evolutionary consequences of polyploidy in Ephedra	20
Genome-wide SNPs clarify lineage diversity confused by coloration in coralsnakes of the Micrurus diastema species complex (Serpentes: Elapidae)	19
Cryptic diversity and non-adaptive radiation of montane New Guinea skinks (Papuascincus; Scincidae)	19
A comprehensive phylogeny and taxonomic evaluation of the waxbills (Aves: Estrildidae)	19
Divergent evolution profiles of DD37D and DD39D families of Tc1/mariner transposons in eukaryotes	19
ddRAD analyses reveal a credible phylogenetic relationship of the four main genera of Bambusa-Dendrocalamus-Gigantochloa complex (Poaceae: Bambusoideae)	19
Molecular phylogeny, classification, biogeography and diversification patterns of a diverse group of moths (Geometridae: Boarmiini)	19
Diversity, biogeography, evolutionary relationships, and conservation of Eastern Mediterranean freshwater mussels (Bivalvia: Unionidae)	19
Phylotranscriptomics reveals the complex evolutionary and biogeographic history of the genus Tsuga with an East Asian-North American disjunct distribution	19

Unraveling the systematics and evolution of the ‘Geophagus’ brasiliensis (Cichliformes: Cichlidae) species complex	19
Phylogenomic inference of species and subspecies diversity in the Palearctic salamander genus Salamandra	19
Phylogenetics and comparative plastome genomics of two of the largest genera of angiosperms, Piper and Peperomia (Piperaceae)	19
Phylomitogenomics provides new perspectives on the Euphasmatodea radiation (Insecta: Phasmatodea)	19
Shining a light on species delimitation in the tree genus Engelhardia Leschenault ex Blume (Juglandaceae)	19
Poor performance of DNA barcoding and the impact of RAD loci filtering on the species delimitation of an Iberian ant-eating spider	18
Plastome phylogenomics, systematics, and divergence time estimation of the Beilschmiedia group (Lauraceae)	18
Evolutionary patterns of plastome uncover diploid-polyploid maternal relationships in Triticeae	18
Genome-wide data reveal discordant mitonuclear introgression in the intermediate horseshoe bat (Rhinolophus affinis)	18
Genomic fingerprints of palaeogeographic history: The tempo and mode of rift tectonics across tropical Africa has shaped the diversification of the killifish genus Nothobranchius (Teleostei: Cyprinodo	18
Analysis of ultraconserved elements supports African origins of narrow-mouthed frogs	18
Systematics and geographical distribution of Galba species, a group of cryptic and worldwide freshwater snails	18
Cryptic diversity and ancient diversification in the northern Atlantic Forest Pristimantis (Amphibia, Anura, Craugastoridae)	18
Early eukaryotic origins and metazoan elaboration of MAPR family proteins	18
Phylogenomic analyses of mud dragons (Kinorhyncha)	17
Phylogenetics of mud snakes (Squamata: Serpentes: Homalopsidae): A paradox of both undescribed diversity and taxonomic inflation	17
Mitochondrial evolution in the Demospongiae (Porifera): Phylogeny, divergence time, and genome biology	17
Comparative phylogeographic and demographic analyses reveal a congruent pattern of sister relationships between bird populations of the northern and south-central Atlantic Forest	17
Multilocus phylogeny of Paratelmatobiinae (Anura: Leptodactylidae) reveals strong spatial structure and previously unknown diversity in the Atlantic Forest hotspot	17
Fossil-calibrated time tree of Podarcis wall lizards provides limited support for biogeographic calibration models	17
Lost in translation: Population genomics and long-read sequencing reveals relaxation of concerted evolution of the ribosomal DNA cistron	17
Predatory colponemids are the sister group to all other alveolates	17
Reconstruction of the evolutionary biogeography reveal the origins and diversification of oysters (Bivalvia: Ostreidae)	17
A phylogeny for the Drosophila montium species group: A model clade for comparative analyses	17
Gene-tree misrooting drives conflicts in phylogenomic coalescent analyses of palaeognath birds	17
Another blow to the conserved gene order in Annelida: Evidence from mitochondrial genomes of the calcareous tubeworm genus Hydroides	17
Unique environmental Symbiodiniaceae diversity at an isolated island in the northwestern Pacific	17
New genetic markers for Sapotaceae phylogenomics: More than 600 nuclear genes applicable from family to population levels	17
A polyvalent and universal tool for genomic studies in gastropod molluscs (Heterobranchia)	16
Phylogenomics resolves ambiguous relationships within Aciculata (Errantia, Annelida)	16
A 313 plastome phylogenomic analysis of Pooideae: Exploring relationships among the largest subfamily of grasses	16
New insights into the evolution of the fern family Dennstaedtiaceae from an expanded molecular phylogeny and morphological analysis	16
Evolutionary history of inversions in directional mutational pressures in crustacean mitochondrial genomes: Implications for evolutionary studies	16
The phylogenetic relationship within SARS-CoV-2s: An expanding basal clade	16
Phylogenomics of African radiation of Praomyini (Muridae: Murinae) rodents: First fully resolved phylogeny, evolutionary history and delimitation of extant genera	16
Molecular systematics and biogeographic history of the African climbing-mouse complex (Dendromus)	16
Unravelling unknown cyanobacteria diversity linked with HCN production	16
Trait-dependent dispersal in rails (Aves: Rallidae): Historical biogeography of a cosmopolitan bird clade	16
Evolution of Sri Lanka’s Giant Danios (Teleostei: Cyprinidae: Devario): Teasing apart species in a recent diversification	16
Cophylogenetic patterns in algal symbionts correlate with repeated symbiont switches during diversification and geographic expansion of lichen-forming fungi in the genus Sticta (Ascomycota, Peltigerac	16
Multigene phylogenetics of euglenids based on single-cell transcriptomics of diverse phagotrophs	16
The potential of genome-wide RAD sequences for resolving rapid radiations: a case study in Cactaceae	16
The impact of Miocene orogeny for the diversification of Caucasian Epeorus (Caucasiron) mayflies (Ephemeroptera: Heptageniidae)	16
Genetic changes and host adaptability in sugarcane mosaic virus based on complete genome sequences	16
The biogeography of Dromiciops in southern South America: Middle Miocene transgressions, speciation and associations with Nothofagus	16
The interplay between host biogeography and phylogeny in structuring diversification of the feather louse genus Penenirmus	16
Cryptic species and host specificity in the bryozoan-associated hydrozoan Zanclea divergens (Hydrozoa, Zancleidae)	15
Plastid phylogenomics improves resolution of phylogenetic relationship in the Cheirostylis and Goodyera clades of Goodyerinae (Orchidoideae, Orchidaceae)	15
Molecular Phylogeny of Cryptonanus (Didelphidae: Thylamyini): Evidence for a recent and complex diversification in South American open biomes	15
A comprehensive phylogeny helps clarify the evolutionary history of host breadth and lure response in the Australian Dacini fruit flies (Diptera: Tephritidae)	15
Quaternary climatic fluctuations influence the demographic history of two species of sky-island endemic amphibians in the Neotropics	15
Phylogenomics of the Neotropical fish family Serrasalmidae with a novel intrafamilial classification (Teleostei: Characiformes)	15
Phylotranscriptomics reveals the evolutionary history of subtropical East Asian white pines: further insights into gymnosperm diversification	15
Vastly underestimated species richness of Amazonian salamanders (Plethodontidae: Bolitoglossa) and implications about plethodontid diversification	15
Nuclear phylogenomics, but not mitogenomics, resolves the most successful Late Miocene radiation of African mammals (Rodentia: Muridae: Arvicanthini)	15
Evolution of protective symbiosis in palaemonid shrimps (Decapoda: Caridea) with emphases on host spectrum and morphological adaptations	15
Molecular phylogeny and species delimitation of the genus Schizodon (Characiformes, Anostomidae)	15
Historical biogeography of Pomaderris (Rhamnaceae): Continental vicariance in Australia and repeated independent dispersals to New Zealand	15
Phylogenetics and the evolution of terrestriality in mudskippers (Gobiidae: Oxudercinae)	15
Phylogenomics of the aquatic plant genus Ottelia (Hydrocharitaceae): Implications for historical biogeography	14
Genome-wide RAD sequencing resolves the evolutionary history of serrate leaf Juniperus and reveals discordance with chloroplast phylogeny	14
Homoploid hybrids, allopolyploids, and high ploidy levels characterize the evolutionary history of a western North American quillwort (Isoëtes) complex	14
Comparative mitogenomics and phylogenetics of the stinging wasps (Hymenoptera: Aculeata)	14
Re-evaluating and dating myriapod diversification with phylotranscriptomics under a regime of dense taxon sampling	14
Phylogenomic insights into the temporal-spatial divergence history, evolution of leaf habit and hybridization in Stachyurus (Stachyuraceae)	14
Multiple species delimitation approaches applied to the avian lark genus Alaudala	14
Species delimitation analyses of NE Atlantic Chaetozone (Annelida, Cirratulidae) reveals hidden diversity among a common and abundant marine annelid	14
Coalescent-based delimitation and species-tree estimations reveal Appalachian origin and Neogene diversification in Russula subsection Roseinae	14
Phylogenomic data resolve higher-level relationships within South American Liolaemus lizards	14
Phylogenetic relationships of the Boana pulchella Group (Anura: Hylidae)	14
An ancient, Antarctic-specific species complex: large divergences between multiple Antarctic lineages of the tardigrade genus Mesobiotus	14
Cryptic host-driven speciation of mobilid ciliates epibiotic on freshwater planarians	14
Plastome structure, evolution, and phylogeny of Selaginella	14
Phylogeny and biogeography of Pachygoneae (Menispermaceae), with consideration of the boreotropical flora hypothesis and resurrection of the genera Cebatha and Nephroia	14
A timetree for phytoplasmas (Mollicutes) with new insights on patterns of evolution and diversification	14
Climatic dynamics and topography control genetic variation in Atlantic Forest montane birds	14
Parallel decay of vision genes in subterranean water beetles	14
The evolutionary history of an accidental model organism, the leopard gecko Eublepharis macularius (Squamata: Eublepharidae)	14
Flower morphology is correlated with distribution and phylogeny in Bertolonia (Melastomataceae), an herbaceous genus endemic to the Atlantic Forest	14
Plastome-based phylogenomics elucidate relationships in rare Isoëtes species groups from the Neotropics	14

Molecular phylogenetics of Lotus (Leguminosae) with emphasis in the tempo and patterns of colonization in the Macaronesian region	14
New taxonomic and evolutionary insights relevant to the cat flea, Ctenocephalides felis: A geographic perspective	14
How challenging RADseq data turned out to favor coalescent-based species tree inference. A case study in Aichryson (Crassulaceae)	14
Phylogeography of Mytilisepta virgata (Mytilidae: Bivalvia) in the northwestern Pacific: Cryptic mitochondrial lineages and mito-nuclear discordance	13
Multilocus phylogeny of Bornean Bent-Toed geckos (Gekkonidae: Cyrtodactylus) reveals hidden diversity, taxonomic disarray, and novel biogeographic patterns	13
A multi-gene phylogenetic analysis of the leafhopper subfamily Typhlocybinae (Hemiptera: Cicadellidae) challenges the traditional view of the evolution of wing venation	13
Genomic phylogeography of the White-crowned Manakin Pseudopipra pipra (Aves: Pipridae) illuminates a continental-scale radiation out of the Andes	13
Evolutionary history of Hemerocallis in Japan inferred from chloroplast and nuclear phylogenies and levels of interspecific gene flow	13
Complex evolutionary history of coffees revealed by full plastid genomes and 28,800 nuclear SNP analyses, with particular emphasis on Coffea canephora (Robusta coffee)	13
Adaptive radiation and speciation in Rhipicephalus ticks: A medley of novel hosts, nested predator-prey food webs, off-host periods and dispersal along temperature variation gradients	13
Deconstructing Difflugia: The tangled evolution of lobose testate amoebae shells (Amoebozoa: Arcellinida) illustrates the importance of convergent evolution in protist phylogeny	13
Ancestral sequence reconstruction of ancient lipase from family I.3 bacterial lipolytic enzymes	13
Contrasting biogeographical patterns in Margarella (Gastropoda: Calliostomatidae: Margarellinae) across the Antarctic Polar Front	13
Untangling filamentous marine cyanobacterial diversity from the coast of South Florida with the description of Vermifilaceae fam. nov. and three new genera: Leptochromothrix gen. nov., Ophiophycus gen	13
Revisiting the phylogeny of the genus Lolliguncula Steenstrup 1881 improves understanding of their biogeography and proves the validity of Lolliguncula argus Brakoniecki & Roper, 1985	13
Discordant evolution of organellar genomes in peas (Pisum L.)	13
Plastid genomes and phylogenomics of liverworts (Marchantiophyta): Conserved genome structure but highest relative plastid substitution rate in land plants	13
Opening a door to the spatiotemporal history of plants from the tropical Indochina Peninsula to subtropical China	12
Phylogenomics of Porites from the Arabian Peninsula	12
Caryophylliids (Anthozoa, Scleractinia) and mitochondrial gene order: Insights from mitochondrial and nuclear phylogenomics	12
Rates and patterns of molecular evolution in bryophyte genomes, with focus on complex thalloid liverworts, Marchantiopsida	12
Phylogenomics of the Mesoamerican alligator-lizard genera Abronia and Mesaspis (Anguidae: Gerrhonotinae) reveals multiple independent clades of arboreal and terrestrial species	12
Mitogenomics of Cladocera (Branchiopoda): Marked gene order rearrangements and independent predation roots	12
Origin and evolution of the symbiosis between sea anemones (Cnidaria, Anthozoa, Actiniaria) and hermit crabs, with additional notes on anemone-gastropod associations	12
Phylogenetic relationships and the evolution of host preferences in the largest clade of brood parasitic bees (Apidae: Nomadinae)	12
Diversity, biogeography, and reproductive evolution in the genus Pipa (Amphibia: Anura: Pipidae)	12
Transcriptomic data reveals nuclear-mitochondrial discordance in Gomphocerinae grasshoppers (Insecta: Orthoptera: Acrididae)	12
Total-evidence analysis resolves the phylogenetic position of an enigmatic group of Paederinae rove beetles (Coleoptera: Staphylinidae)	12
Resolving complicated relationships of the Panax bipinnatifidus complex in southwestern China by RAD-seq data	12
Deciphering reticulate evolution of the largest group of polyploid vertebrates, the subfamily cyprininae (Teleostei: Cypriniformes)	12
The temporal dynamics of evolutionary diversification in Ipomoea	12
Evolutionary considerations of the oligosaccharyltransferase AglB and other aspects of N-glycosylation across Archaea	12
Extensive variation in nucleotide substitution rate and gene/intron loss in mitochondrial genomes of Pelargonium	12
Phylogenetic relationships of the Chinese torrent frogs (Ranidae: Amolops) revealed by phylogenomic analyses of AFLP-Capture data	12
Evolving in the darkness: Phylogenomics of Sinocyclocheilus cavefishes highlights recent diversification and cryptic diversity	12
Large-scale phylogenomics of the genus Macrostomum (Platyhelminthes) reveals cryptic diversity and novel sexual traits	12
Phylogeny and evolution of mycophagy in the Zygothrica genus group (Diptera: Drosophilidae)	12
A RADseq phylogeny of Barleria (Acanthaceae) resolves fine-scale relationships	12
Phylogenomics and molecular species delimitation reveals great cryptic diversity of leaf-toed geckos (Phyllodactylidae: Phyllodactylus), ancient origins, and diversification in Mexico	12
Analyses of chemosensory genes provide insight into the evolution of behavioral differences to phytochemicals in Bactrocera species	12
Repeated intercontinental migrations and recurring hybridizations characterise the evolutionary history of yew (Taxus L.)	12
The IS630/Tc1/mariner transposons in three ctenophore genomes	12
Mesozoic origin of coleoid cephalopods and their abrupt shifts of diversification patterns	11
Phylogenomic analysis, reclassification, and evolution of South American nemesioid burrowing mygalomorph spiders	11
Further insights into the phylogeny of peniculid ciliates (Ciliophora, Oligohymenophorea) based on multigene data	11
Comparison of sequence-capture and ddRAD approaches in resolving species and populations in hexacorallian anthozoans	11
Molecular phylogeny of Thoracotremata crabs (Decapoda, Brachyura): Toward adopting monophyletic superfamilies, invasion history into terrestrial habitats and multiple origins of symbiosis	11
The number of species of degus (genus Octodon) is currently underestimated: An appraisal of species limits and their phylogenetic relationships (Rodentia: Hystricomorpha: Octodontidae)	11
First worldwide molecular phylogeny of the morphologically and ecologically hyperdiversified snapping shrimp genus Alpheus (Malacostraca: Decapoda)	11
New species boundaries and the diversification history of marsh rat taxa clarify historical connections among ecologically and geographically distinct wetlands of South America	11
Combination of Sanger and target-enrichment markers supports revised generic delimitation in the problematic ‘Urera clade’ of the nettle family (Urticaceae)	11
Plastomes in the holoparasitic family Balanophoraceae: Extremely high AT content, severe gene content reduction, and two independent genetic code changes	11
Cryptic diversity in the model fern genus Ceratopteris (Pteridaceae)	11
Evolution of vector transmitted parasites by host switching revealed through sequencing of Haemoproteus parasite mitochondrial genomes	11
A comprehensive molecular phylogeny of Afrotropical white-eyes (Aves: Zosteropidae) highlights prior underestimation of mainland diversity and complex colonisation history	11
A comprehensive molecular phylogeny of the brachyuran crab superfamily Xanthoidea provides novel insights into its systematics and evolutionary history	11
How many long branch orders occur in Chelicerata? Opposing effects of Palpigradi and Opilioacariformes on phylogenetic stability	11
A multilocus phylogeny of the non-photosynthetic parasitic plant Cistanche (Orobanchaceae) refutes current taxonomy and identifies four major morphologically distinct clades	11
Homeologs of Brassica SOC1, a central regulator of flowering time, are differentially regulated due to partitioning of evolutionarily conserved transcription factor binding sites in promoters	11
Multilocus phylogeny of African striped grass mice (Lemniscomys): Stripe pattern only partly reflects evolutionary relationships	11
A molecular phylogeny of forktail damselflies (genus Ischnura) reveals a dynamic macroevolutionary history of female colour polymorphisms	11
Tenebriella gen. nov. – The dark twin of Oscillatoria	11
A genomic survey of Tc1-mariner transposons in nematodes suggests extensive horizontal transposon transfer events	11
A robust phylogenomic framework for the calamoid palms	11
Diversification dynamics of freshwater bivalves (Unionidae: Parreysiinae: Coelaturini) indicate historic hydrographic connections throughout the East African Rift System	11
India’s biogeographic history through the eyes of blindsnakes- filling the gaps in the global typhlopoid phylogeny	11
Phylogeny and historical biogeography of the pantropical genus Parkia (Leguminosae, Caesalpinioideae, mimosoid clade)	11
Genetic similarities versus morphological resemblance: Unraveling a polyploid complex in a Mediterranean biodiversity hotspot	11
Deciphering phylogenetic relationships in class Karyorelictea (Protista, Ciliophora) based on updated multi-gene information with establishment of a new order Wilbertomorphida n. ord.	11
Swimming through the sands of the Sahara and Arabian deserts: Phylogeny of sandfish skinks (Scincidae, Scincus) reveals a recent and rapid diversification	11
Plastome phylogeography in two African rain forest legume trees reveals that Dahomey Gap populations originate from the Cameroon volcanic line	11
Depth as a driver of evolution and diversification of ancient squat lobsters (Decapoda, Galatheoidea, Phylladiorhynchus)	11
Phylogeny and biogeography of Myrcia sect. Aguava (Myrtaceae, Myrteae) based on phylogenomic and Sanger data provide evidence for a Cerrado origin and geographically structured clades	11
Molecular evolutionary analyses of tooth genes support sequential loss of enamel and teeth in baleen whales (Mysticeti)	11
A dated molecular phylogeny and biogeographical analysis reveals the evolutionary history of the trans-pacifically disjunct tropical tree genus Ormosia (Fabaceae)	11
Using ultraconserved elements to reconstruct the termite tree of life	11
Historical specimens and the limits of subspecies phylogenomics in the New World quails (Odontophoridae)	10
Rivers of Indochina as potential drivers of lineage diversification in the spotted flying lizard (Draco maculatus) species complex	10
Cyanobacteria in hot pursuit: Characterization of cyanobacteria strains, including novel taxa, isolated from geothermal habitats from different ecoregions of the world	10
Global dispersal and diversification in ground beetles of the subfamily Carabinae	10
Comprehensive phylogeny of Myrmecocystus honey ants highlights cryptic diversity and infers evolution during aridification of the American Southwest	10
A broadly resolved molecular phylogeny of New Zealand cheilostome bryozoans as a framework for hypotheses of morphological evolution	10
Molecular phylogenetics of the Clupeiformes based on exon-capture data and a new classification of the order	10
Diversity, phylogeny, and historical biogeography of large-eye seabreams (Teleostei: Lethrinidae)	10
Diversification in Qinghai-Tibet Plateau: Orchidinae (Orchidaceae) clades exhibiting pre-adaptations play critical role	10
New insights about species delimitation in red snappers (Lutjanus purpureus and L. campechanus) using multilocus data	10
King or royal family? Testing for species boundaries in the King Cobra, Ophiophagus hannah (Cantor, 1836), using morphology and multilocus DNA analyses	10
One-way ticket to the blue: A large-scale, dated phylogeny revealed asymmetric land-to-water transitions in acariform mites (Acari: Acariformes)	10
Phylogeny and highland adaptation of Chinese species in Allium section Daghestanica (Amaryllidaceae) revealed by transcriptome sequencing	10
Due South: The evolutionary history of Sub-Antarctic and Antarctic Tritoniidae nudibranchs	10
Evolution between forest macrorefugia is linked to discordance between genetic and morphological variation in Neotropical passerines	10
Phylogeny and evolution of morphological structures in a highly diverse lineage of fruiting-body-forming amoebae, order Trichiales (Myxomycetes, Amoebozoa)	10
The phylogenetic position of ridley's worm lizard reveals the complex biogeographic history of New World insular amphisbaenids	10
Eight new mitogenomes clarify the phylogenetic relationships of Stromboidea within the caenogastropod phylogenetic framework	10
Evolutionary history of inquiline social parasitism in Plagiolepis ants	10