Systemic Biology

Papers
(The H4-Index of Systemic Biology is 29. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-04-01 to 2025-04-01.)
ArticleCitations
Detecting and Removing Sample Contamination in Phylogenomic Data: An Example and its Implications for Cicadidae Phylogeny (Insecta: Hemiptera)175
Corrigendum to: Delayed Adaptive Radiation among New Zealand Stream Fishes: Joint Estimation of Divergence Time and Trait Evolution in a Newly Delineated Island Species Flock72
Announcements70
Dispersal-Limited Symbionts Exhibit Unexpectedly Wide Variation in Host Specificity63
UnFATE: A Comprehensive Probe Set and Bioinformatics Pipeline for Phylogeny Reconstruction and Multilocus Barcoding of Filamentous Ascomycetes (Ascomycota, Pezizomycotina)58
Wallacean and Melanesian Islands Promote Higher Rates of Diversification within the Global Passerine Radiation Corvides58
Between a Rock and a Hard Polytomy: Phylogenomics of the Rock-Dwelling Mbuna Cichlids of Lake Malaŵi56
Online tree expansion could help solve the problem of scalability in Bayesian phylogenetics51
Hidden Phylogenomic Signal Helps Elucidate Arsenurine Silkmoth Phylogeny and the Evolution of Body Size and Wing Shape Trade-Offs51
PhyloJunction: A Computational Framework for Simulating, Developing, and Teaching Evolutionary Models49
Populating a Continent: Phylogenomics Reveal the Timing of Australian Frog Diversification49
New Phylogenetic Markov Models for Inapplicable Morphological Characters49
Biased Gene Introgression and Adaptation in the Face of Chloroplast Capture in Aquilegia amurensis48
Understanding Species Boundaries that Arise from Complex Histories: Gene Flow Across the Speciation Continuum in the Spotted Whiptail Lizards48
The Community Coevolution Model with Application to the Study of Evolutionary Relationships between Genes Based on Phylogenetic Profiles44
Assessing the Adequacy of Morphological Models Using Posterior Predictive Simulations43
Clockor2: Inferring Global and Local Strict Molecular Clocks Using Root-to-Tip Regression42
Expectation-Maximization enables Phylogenetic Dating under a Categorical Rate Model41
Blouch: Bayesian Linear Ornstein-Uhlenbeck Models for Comparative Hypotheses40
Empirical and Methodological Challenges to the Model-Based Inference of Diversification Rates in Extinct Clades39
Ecological Divergence and the History of Gene Flow in the Nearctic Milksnakes (Lampropeltis triangulumComplex)36
Alpine Extremophytes in Evolutionary Turmoil: Complex Diversification Patterns and Demographic Responses of a Halophilic Grass in a Central Asian Biodiversity Hotspot33
Geogenomic Predictors of Genetree Heterogeneity Explain Phylogeographic and Introgression History: A Case Study in an Amazonian Bird (Thamnophilus aethiops)33
Correction to: Robust, Universal Tree Balance Indices33
Comparing Partitioned Models to Mixture Models: Do Information Criteria Apply?32
Miocene Climate and Habitat Change Drove Diversification inBicyclus, Africa’s Largest Radiation of Satyrine Butterflies32
Is Phenotypic Evolution Affected by Spiders’ Construction Behaviors?31
Diversification Models Conflate Likelihood and Prior, and Cannot be Compared Using Conventional Model-Comparison Tools31
Assessing Confidence in Root Placement on Phylogenies: An Empirical Study Using Nonreversible Models for Mammals30
The Frequency and Topology of Pseudoorthologs29
Corrigendum to: Fossil-Informed Models Reveal a Boreotropical Origin and Divergent Evolutionary Trajectories in the Walnut Family (Juglandaceae)29
Fossils Do Not Substantially Improve, and May Even Harm, Estimates of Diversification Rate Heterogeneity29
Identifying the Best Approximating Model in Bayesian Phylogenetics: Bayes Factors, Cross-Validation or wAIC?29
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