OOIR: Observatory of International Research

Papers

(The H4-Index of Systemic Biology is 31. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-05-01 to 2024-05-01.)

Article	Citations
Phylogenomics Reveals Ancient Gene Tree Discordance in the Amphibian Tree of Life	126
Disentangling Sources of Gene Tree Discordance in Phylogenomic Data Sets: Testing Ancient Hybridizations in Amaranthaceae s.l	113
A Comprehensive Phylogenomic Platform for Exploring the Angiosperm Tree of Life	107
The Origin of the Legumes is a Complex Paleopolyploid Phylogenomic Tangle Closely Associated with the Cretaceous–Paleogene (K–Pg) Mass Extinction Event	82
Phylogenomics, Origin, and Diversification of Anthozoans (Phylum Cnidaria)	73
The Perfect Storm: Gene Tree Estimation Error, Incomplete Lineage Sorting, and Ancient Gene Flow Explain the Most Recalcitrant Ancient Angiosperm Clade, Malpighiales	63
Out of Sight, Out of Mind: Widespread Nuclear and Plastid-Nuclear Discordance in the Flowering Plant GenusPolemonium(Polemoniaceae) Suggests Widespread Historical Gene Flow Despite Limited Nucl	62
Ghost Lineages Highly Influence the Interpretation of Introgression Tests	49
Defining Coalescent Genes: Theory Meets Practice in Organelle Phylogenomics	48
Phylogenomics of Parasitic and Nonparasitic Lice (Insecta: Psocodea): Combining Sequence Data and Exploring Compositional Bias Solutions in Next Generation Data Sets	47
The Legacy of Recurrent Introgression during the Radiation of Hares	45
Accelerated Diversification Explains the Exceptional Species Richness of Tropical Characoid Fishes	43
Most Genomic Loci Misrepresent the Phylogeny of an Avian Radiation Because of Ancient Gene Flow	43
QMaker: Fast and Accurate Method to Estimate Empirical Models of Protein Evolution	43
Cryptic Patterns of Speciation in Cryptic Primates: Microendemic Mouse Lemurs and the Multispecies Coalescent	40
Fast and Accurate Estimation of Species-Specific Diversification Rates Using Data Augmentation	40
Sequence Capture Phylogenomics of True Spiders Reveals Convergent Evolution of Respiratory Systems	39
Fossil-Informed Models Reveal a Boreotropical Origin and Divergent Evolutionary Trajectories in the Walnut Family (Juglandaceae)	38
DNA Barcodes Combined with Multilocus Data of Representative Taxa Can Generate Reliable Higher-Level Phylogenies	37
Parallel ddRAD and Genome Skimming Analyses Reveal a Radiative and Reticulate Evolutionary History of the Temperate Bamboos	37
A Total-Evidence Dated Phylogeny of Echinoidea Combining Phylogenomic and Paleontological Data	35
A Total-Group Phylogenetic Metatree for Cetacea and the Importance of Fossil Data in Diversification Analyses	35
Gene Flow Increases Phylogenetic Structure and Inflates Cryptic Species Estimations: A Case Study on Widespread Philippine Puddle Frogs (Occidozyga laevis)	34
Congruence and Conflict in the Higher-Level Phylogenetics of Squamate Reptiles: An Expanded Phylogenomic Perspective	33
Mind the Outgroup and Bare Branches in Total-Evidence Dating: a Case Study of Pimpliform Darwin Wasps (Hymenoptera, Ichneumonidae)	33

StarBeast3: Adaptive Parallelized Bayesian Inference under the Multispecies Coalescent	32
Paralogs and Off-Target Sequences Improve Phylogenetic Resolution in a Densely Sampled Study of the Breadfruit Genus (Artocarpus, Moraceae)	31
Phylogenomics of Monitor Lizards and the Role of Competition in Dictating Body Size Disparity	31
Dissecting Incongruence between Concatenation- and Quartet-Based Approaches in Phylogenomic Data	31
Do Alignment and Trimming Methods Matter for Phylogenomic (UCE) Analyses?	31
Six-State Amino Acid Recoding is not an Effective Strategy to Offset Compositional Heterogeneity and Saturation in Phylogenetic Analyses	31