Journal of the American Medical Informatics Association

Article	Citations
“Goldmine” or “big mess”? An interview study on the challenges of designing, operating, and ensuring the durability of Clinical Data Warehouses in France and Belgium	284
Enhancing patient representation learning with inferred family pedigrees improves disease risk prediction	142
Multi-faceted analysis and prediction for the outbreak of pediatric respiratory syncytial virus	133
Utilizing patient-nurse verbal communication in building risk identification models: the missing critical data stream in home healthcare	121
Uncovering hidden trends: identifying time trajectories in risk factors documented in clinical notes and predicting hospitalizations and emergency department visits during home health care	87
Blockchain-enabled immutable, distributed, and highly available clinical research activity logging system for federated COVID-19 data analysis from multiple institutions	75
All of whom? Limitations encountered using All of Us Researcher Workbench in a Primary Care residents secondary data analysis research training block	72
The added value of text from Dutch general practitioner notes in predictive modeling	71
A framework for understanding label leakage in machine learning for health care	69
Using Twitter data to understand public perceptions of approved versus off-label use for COVID-19-related medications	68
Evaluating resources composing the PheMAP knowledge base to enhance high-throughput phenotyping	68
Challenges using electronic health records to support unhealthy alcohol use screening and intervention in primary care practices in the Pacific Northwest	65
Building an allergy reconciliation module to eliminate allergy discrepancies in electronic health records	65
Designing visual hierarchies for the communication of health data	64
Self-supervised machine learning using adult inpatient data produces effective models for pediatric clinical prediction tasks	63
What did you do to avoid the climate disaster? A call to arms for health informatics	60
Identifying family structures from obituaries and matching them to patients in an electronic heath record	55
Association between state payment parity policies and telehealth usage at community health centers during COVID-19	52
CARE-SD: classifier-based analysis for recognizing provider stigmatizing and doubt marker labels in electronic health records: model development and validation	47
Transparent deep learning to identify autism spectrum disorders (ASD) in EHR using clinical notes	45
Reformulating patient stratification for targeting interventions by accounting for severity of downstream outcomes resulting from disease onset: a case study in sepsis	43
Efficacy of the mLab App: a randomized clinical trial for increasing HIV testing uptake using mobile technology	43
The ongoing French BaMaRa-BNDMR cohort: implementation and deployment of a nationwide information system on rare disease	39
Long-term care plan recommendation for older adults with disabilities: a bipartite graph transformer and self-supervised approach	39
Foundational domains and competencies for baccalaureate health informatics education	38

RefAI: a GPT-powered retrieval-augmented generative tool for biomedical literature recommendation and summarization	38
Clickbusters letter response	38
Comparing penalization methods for linear models on large observational health data	38
Distributed, immutable, and transparent biomedical limited data set request management on multi-capacity network	37
Data-driven automated classification algorithms for acute health conditions: applying PheNorm to COVID-19 disease	37
The role of health system penetration rate in estimating the prevalence of type 1 diabetes in children and adolescents using electronic health records	37
Regulation of artificial intelligence in healthcare: Clinical Laboratory Improvement Amendments (CLIA) as a model	36
Electronic health record-supported implementation of an evidence-based pathway for perioperative surgical care	36
The incremental design of a machine learning framework for medical records processing	36
Preparing for the bedside—optimizing a postpartum depression risk prediction model for clinical implementation in a health system	35
Accuracy of ICD-10-CM encounter diagnoses from health records for identifying self-harm events	35
Letter to the editors in response to “Leveraging artificial intelligence to summarize abstracts in lay language for increasing research accessibility and transparency”	34
Using automated methods to detect safety problems with health information technology: a scoping review	34
Tablet distribution to veterans: an opportunity to increase patient portal adoption and use	32
Reply to Layne et al.’s Letter to the Editor	32
CDEMapper: enhancing National Institutes of Health common data element use with large language models	31
Growth curve modeling of virtual events and online engagement in a palliative care peer support online health community for adolescents and young adults	31
Retrospective analysis of the impact of electronic medical record alerts on low value care in a pediatric hospital	30
Variations in digital health literacy for pediatric caregivers of hospitalized children: implications for digital health equity	30
Association of physician burnout with perceived EHR work stress and potentially actionable factors	29
Developing electronic clinical quality measures to assess the cancer diagnostic process	29
Predicting mortality in hospitalized influenza patients: integration of deep learning-based chest X-ray severity score (FluDeep-XR) and clinical variables	29
Equity implications of extended reality technologies for health and procedural anxiety: a systematic review and implementation-focused framework	28
myAURA: a personalized health library for epilepsy management via knowledge graph sparsification and visualization	28
Digital interventions for antimicrobial prescribing and monitoring: a qualitative meta-synthesis of factors influencing user acceptance	28
Variation in pediatric and adolescent electronic health data sharing practices under the 21st Century Cures Act	27
Clinical decision support malfunctions related to medication routes: a case series	27
Automatically pre-screening patients for the rare disease aromatic l-amino acid decarboxylase deficiency using knowledge engineering, natural language processing, and machine learning on a	27
Patient and researcher stakeholder preferences for use of electronic health record data: a qualitative study to guide the design and development of a platform to honor patient preferences	26
Deploying a national clinical text processing infrastructure	26
Comparative effectiveness of generic commercial versus locally customized clinical decision support tools to reduce prescription of nonsteroidal anti-inflammatory drugs for patients with heart failure	26
Bridging the gap in author names: building an enhanced author name dataset for biomedical literature system	26
Generative AI in orthopedics: an explainable deep few-shot image augmentation pipeline for plain knee radiographs and Kellgren-Lawrence grading	26
AMIA’s code of professional and ethical conduct 2022	26
JAMIA at 30: looking back and forward	25
Prediction of multiclass surgical outcomes in glaucoma using multimodal deep learning based on free-text operative notes and structured EHR data	25
Constructing knowledge: the role of AI in medical learning	25
Returning value to the community through the All of Us Research Program Data Sandbox model	25
Exploring home healthcare clinicians’ needs for using clinical decision support systems for early risk warning	25
Identifying stigmatizing and positive/preferred language in obstetric clinical notes using natural language processing	25
Dobbs and the future of health data privacy for patients and healthcare organizations	24
Characterizing variability of electronic health record-driven phenotype definitions	24
Potential bias and lack of generalizability in electronic health record data: reflections on health equity from the National Institutes of Health Pragmatic Trials Collaboratory	24
Development and validation of a multi-stage self-supervised learning model for optical coherence tomography image classification	23
Learning competing risks across multiple hospitals: one-shot distributed algorithms	23
Machine learning-based prediction models in medical decision-making in kidney disease: patient, caregiver, and clinician perspectives on trust and appropriate use	23
Comparison of phenomic profiles in the All of Us Research Program against the US general population and the UK Biobank	23
Deep learning algorithms to detect diabetic kidney disease from retinal photographs in multiethnic populations with diabetes	23
Can large language models provide secondary reliable opinion on treatment options for dermatological diseases?	22
Correction to: Association between state payment parity policies and telehealth usage at community health centers during COVID-19	22

High-performance automated abstract screening with large language model ensembles	22
AI in health: keeping the human in the loop	22
Seeing things the same way: perspectives and lessons learned from research-design collaborations	22
The substance-exposed birthing person-infant/child dyad and health information exchange in the United States	22
Targeted messaging to improve the adoption of clinical decision support for prescription drug monitoring program use	21
Reducing diagnostic delays in acute hepatic porphyria using health records data and machine learning	21
The value of parental medical records for the prediction of diabetes and cardiovascular disease: a novel method for generating and incorporating family histories	21
Do patients who read visit notes on the patient portal have a higher rate of “loop closure” on diagnostic tests and referrals in primary care? A retrospective cohort study	21
Knowledge infrastructure: a priority to accelerate workflow automation in health care	21
Informatics innovation to provide return of value to participant communities in the All of Us Research Program	20
Real world performance of the 21st Century Cures Act population-level application programming interface	20
21st Century Cures Act: ethical recommendations for new patient-facing products	20
Acute myocardial infarction prognosis prediction with reliable and interpretable artificial intelligence system	20
Disparities in seizure outcomes revealed by large language models	20
Leveraging explainable artificial intelligence to optimize clinical decision support	20
Performance drift in a mortality prediction algorithm among patients with cancer during the SARS-CoV-2 pandemic	19
Using electronic health record audit log data for research: insights from early efforts	19
A call for better validation of opioid overdose risk algorithms	19
A span-based model for extracting overlapping PICO entities from randomized controlled trial publications	19
Diagnostic accuracy differences in detecting wound maceration between humans and artificial intelligence: the role of human expertise revisited	19
PMC-LLaMA: toward building open-source language models for medicine	18
Correction to: De-black-boxing health AI: demonstrating reproducible machine learning computable phenotypes using the N3C-RECOVER Long COVID model in the All of Us data repository	18
Keeping synthetic patients on track: feedback mechanisms to mitigate performance drift in longitudinal health data simulation	18
Electronic health record “gag clauses” and the prevalence of screenshots in peer-reviewed literature	18
Computational simulation of the potential improvement in clinical outcomes of cardiovascular diseases with the use of a personalized predictive medicine approach	18
Perspectives on the role of industry in informatics research and authorship	18
Supporting clinical reasoning through visual summarization and presentation of patient data: a systematic review	18
VIEWER: an extensible visual analytics framework for enhancing mental healthcare	18
A novel hyperparameter search approach for accuracy and simplicity in disease prediction risk scoring	18
Pivotal trial of a deep-learning-based retinal biomarker (Reti-CVD) in the prediction of cardiovascular disease: data from CMERC-HI	17
Large language models for biomedicine: foundations, opportunities, challenges, and best practices	17
Communicating research findings as a return of value to All of Us Research Program participants: insights from staff at Federally Qualified Health Centers	17
Correction to: Deep learning algorithms to detect diabetic kidney disease from retinal photographs in multiethnic populations with diabetes	17
A marker-based neural network system for extracting social determinants of health	17
Dementia and electronic health record phenotypes: a scoping review of available phenotypes and opportunities for future research	17
SNOMED CT entity linking challenge	17
Equitable community-based participatory research engagement with communities of color drives All of Us Wisconsin genomic research priorities	17
Evaluating the validity of the nursing statements algorithmically generated based on the International Classifications of Nursing Practice for respiratory nursing care using large language models	17
LEAP: LLM instruction-example adaptive prompting framework for biomedical relation extraction	17
Using event logs to observe interactions with electronic health records: an updated scoping review shows increasing use of vendor-derived measures	17
Electronic patient-reported outcome measures for triaging and scheduling outpatient appointments: a systematic review and meta-analysis	17
Envisioning the future of primary care: intervention strategies to support patient-centered communication feedback technology	17
Harnessing the potential of large language models in medical education: promise and pitfalls	16
Markov modeling for cost-effectiveness using federated health data network	16
Selective prediction for extracting unstructured clinical data	16
Correction to: In with the old, in with the new: machine learning for time to event biomedical research	16
Enabling inclusive systematic reviews: incorporating preprint articles with large language model-driven evaluations	16
Search still matters: information retrieval in the era of generative AI	16
Promoting interoperability between SNOMED CT and ICD-11: lessons learned from the pilot project mapping between SNOMED CT and the ICD-11 Foundation	16
Local large language models for privacy-preserving accelerated review of historic echocardiogram reports	16
Comprehension, utility, and preferences of prostate cancer survivors for visual timelines of patient-reported outcomes co-designed for limited graph literacy: meters and emojis over comics	16
Machine learning-based infection diagnostic and prognostic models in post-acute care settings: a systematic review	16
Generating colloquial radiology reports with large language models	15
Integrating human-centered design in public health data dashboards: lessons from the development of a data dashboard of sexually transmitted infections in New York State	15
Impact of artificial intelligence on pathologists’ decisions: an experiment	15
Machine learning classification of diagnostic accuracy in pathologists interpreting breast biopsies	15
Prediction of postoperative infections by strategic data imputation and explainable machine learning	15
The role of electronic health record developers in hospital patient sharing	15
The potential and limitations of large language models in identification of the states of motivations for facilitating health behavior change	15
Leveraging large language models to foster equity in healthcare	15
Extracting social support and social isolation information from clinical psychiatry notes: comparing a rule-based natural language processing system and a large language model	15
Leveraging artificial intelligence to summarize abstracts in lay language for increasing research accessibility and transparency	15
Development of electronic health record based algorithms to identify individuals with diabetic retinopathy	15
Utilization patterns and efficiency gains from use of a fully EHR-integrated COVID-19 self-triage and self-scheduling tool: a retrospective analysis	15
LCD benchmark: long clinical document benchmark on mortality prediction for language models	15
Partnering with patients and families living with chronic conditions to coproduce diagnostic safety through OurDX: a previsit online engagement tool	15
BioInstruct: instruction tuning of large language models for biomedical natural language processing	15
Assessing the impact of privacy-preserving record linkage on record overlap and patient demographic and clinical characteristics in PCORnet®, the National Patient-Centered Clinical Research Network	14
Automatic segmentation of atrial fibrillation and flutter in single-lead electrocardiograms by self-supervised learning and Transformer architecture	14
The impact of the COVID-19 pandemic on daily rhythms	14
Trading-off privacy and utility: the Washington State experience assessing the performance of a public health digital exposure notification system for coronavirus disease 2019	14
Comparison of six natural language processing approaches to assessing firearm access in Veterans Health Administration electronic health records	14
A randomized controlled trial of generic and localized MedlinePlus-based information resources for hard-to-reach urban Hispanic community	14
Nonexercise machine learning models for maximal oxygen uptake prediction in national population surveys	14
Transforming and evaluating the UK Biobank to the OMOP Common Data Model for COVID-19 research and beyond	14
Applying anti-racist approaches to informatics: a new lens on traditional frames	14
Building a collaborative cloud platform to accelerate heart, lung, blood, and sleep research	14
Do electronic health record systems “dumb down” clinicians?	14
PheMIME: an interactive web app and knowledge base for phenome-wide, multi-institutional multimorbidity analysis	14
“I don’t think it should take you three days to tell me my baby is dead.” A case of fetal demise: unintended consequences of immediate release of information	14

Strengthening the use of artificial intelligence within healthcare delivery organizations: balancing regulatory compliance and patient safety	13
Visualizing machine learning-based predictions of postpartum depression risk for lay audiences	13
Biomedical blockchain with practical implementations and quantitative evaluations: a systematic review	13
Safety risks and workflow implications associated with nursing-related free-text communication orders	13
A national survey of digital health company experiences with electronic health record application programming interfaces	13
Community engagement in the development of health-related data visualizations: a scoping review	13
Assessing health literacy and diversity within the All of Us Research Program	13
Combining uncertainty-aware predictive modeling and a bedtimeSmart Snackintervention to prevent nocturnal hypoglycemia in people with type 1 diabetes on multiple daily injections	13
Evaluation of the impact of defining observable time in real-world data on outcome incidence	13
A novel approach to patient portal activation data to power equity improvements	13
Scanning the medical phenome to identify new diagnoses after recovery from COVID-19 in a US cohort	13
The use of artificial intelligence to optimize medication alerts generated by clinical decision support systems: a scoping review	13
Translating and evaluating historic phenotyping algorithms using SNOMED CT	13
Methodologies and key considerations for implementing the International Classification of Diseases-11th revision morbidity coding: insights from a national pilot study in China	13
Use of calibration to improve the precision of estimates obtained from All of Us data	13
VACtrac: enhancing access immunization registry data for population outreach using the Bulk Fast Healthcare Interoperable Resource (FHIR) protocol	13
Mapping the delineation of practice to the AMIA foundational domains for applied health informatics	13
Dynamic prediction of work status for workers with occupational injuries: assessing the value of longitudinal observations	13
CoRTEx: contrastive learning for representing terms via explanations with applications on constructing biomedical knowledge graphs	12
Automated deidentification of radiology reports combining transformer and “hide in plain sight” rule-based methods	12
Impact of wearable device data and multi-scale entropy analysis on improving hospital readmission prediction	12
An interactive fitness-for-use data completeness tool to assess activity tracker data	12
Standards and frameworks	12
Deployment of machine learning algorithms to predict sepsis: systematic review and application of the SALIENT clinical AI implementation framework	12
Deep sequential neural network models improve stratification of suicide attempt risk among US veterans	12
Implementation and impact of an electronic patient reported outcomes system in a phase II multi-site adaptive platform clinical trial for early-stage breast cancer	12
Design of an interface to communicate artificial intelligence-based prognosis for patients with advanced solid tumors: a user-centered approach	12
Improving suicide risk prediction via targeted data fusion: proof of concept using medical claims data	12
A messaging standard for environmental inspections: is it time?	12
Correction to: Dobbs and the future of health data privacy for patients and healthcare organizations	12
A perspective on individualized treatment effects estimation from time-series health data	12
Generating synthetic electronic health record data: a methodological scoping review with benchmarking on phenotype data and open-source software	12
National COVID Cohort Collaborative data enhancements: a path for expanding common data models	12
Post-implementation optimization of medication alerts in hospital computerized provider order entry systems: a scoping review	12
To the editor of JAMIA	12
Considerations for development of child abuse and neglect phenotype with implications for reduction of racial bias: a qualitative study	12
Ambient artificial intelligence scribes: physician burnout and perspectives on usability and documentation burden	12
Beyond the individual	11
A call for the informatics community to define priority practice and research areas at the intersection of climate and health: report from 2023 mini-summit	11
REDCap and the National Mesothelioma Virtual Bank—a scalable and sustainable model for rare disease biorepositories	11
In vitro to in vivo translation of artificial intelligence for clinical use: screening for acute coronary syndrome to identify ST-elevation myocardial infarction	11
Beyond Phecodes: leveraging PheMAP to identify patients lacking diagnosis codes in electronic health records	11
Distilling large language models for matching patients to clinical trials	11
Social media use and mental health among older adults with multimorbidity: the role of self-care efficacy	11
Revisions to the Safety Assurance Factors for Electronic Health Record Resilience (SAFER) Guides to update national recommendations for safe use of electronic health records	11
Guidance for reporting analyses of metadata on electronic health record use	11
FairICP: identifying biases and increasing transparency at the point of care in post-implementation clinical decision support using inductive conformal prediction	11
quEHRy: a question answering system to query electronic health records	11
Strengths, weaknesses, opportunities, and threats for the nation’s public health information systems infrastructure: synthesis of discussions from the 2022 ACMI Symposium	11
Innovative informatics interventions to improve health and health care	11
A powerful partnership: researchers and patients working together to develop a patient-facing summary of clinical trial outcome data	11
“Are we there yet?” Ten persistent hazards and inefficiencies with the use of medication administration technology from the perspective of practicing nurses	11
Factors impacting electronic patient-generated data use in safety-net systems: a qualitative study	11
Bridging the digital health divide—patient experiences with mobile integrated health and facilitated telehealth by community-level indicators of health disparity	11
Identifying infected patients using semi-supervised and transfer learning	10
Will clinical standards not be part of the choir? Harmonization between the HL7 gender harmony project model and the NASEM measuring sex, gender identity, and sexual orientation report in the United S	10
Engaging the next generation of physician–informaticians through early exposure to the field: successes and challenges associated with starting a novel clinical informatics interest group	10
Correction	10
Machine learning approaches for electronic health records phenotyping: a methodical review	10
Use of chosen names in electronic health records to promote transgender inclusivity	10
Digital vaccine passports and digital health diplomacy: an online model WHO simulation	10
Correction to: Barriers and facilitators to the implementation of family cancer history collection tools in oncology clinical practices	10
How, for whom, and in what contexts will artificial intelligence be adopted in pathology? A realist interview study	10
FHIR-up! Advancing knowledge from clinical data through application of standardized nursing terminologies within HL7® FHIR®	10
Correction to: Machine learning-based infection diagnostic and prognostic models in post-acute care settings: a systematic review	10
Curating a longitudinal research resource using linked primary care EHR data—a UK Biobank case study	10
Toward a unified understanding of drug-drug interactions: mapping Japanese drug codes to RxNorm concepts	10
A question-answering framework for automated abstract screening using large language models	10
Enhancing the nation’s public health information infrastructure: a report from the ACMI symposium	10
Just another tool in their repertoire: uncovering insights into public and patient perspectives on clinicians’ use of machine learning in perioperative care	10
Reflections on interactive visualization of electronic health records: past, present, future	10
Correction to: Using natural language processing to characterize and predict homeopathic product-associated adverse events in consumer reviews: comparison to reports to FDA Adverse Event Reporting Sys	10
Is the patient speaking or the nurse? Automatic speaker type identification in patient–nurse audio recordings	10
Evaluating the accuracy of a state-of-the-art large language model for prediction of admissions from the emergency room	10
Sounding out solutions: using SONAR to connect participants with relevant healthcare resources	9
Assessing the impact of patient access to clinical notes on clinician EHR documentation	9
Clinical decision support with a comprehensive in-EHR patient tracking system improves genetic testing follow up	9
MMRAG: multi-mode retrieval-augmented generation with large language models for biomedical in-context learning	9
Barriers and facilitators to the implementation of family cancer history collection tools in oncology clinical practices	9
Beyond compliance with the 21st Century Cures Act Rule: a patient controlled electronic health information export application programming interface	9
Information displays for automated surveillance algorithms of in-hospital patient deterioration: a scoping review	9
SDoH-GPT: using large language models to extract social determinants of health	9
Primary care physicians’ electronic health record proficiency and efficiency behaviors and time interacting with electronic health records: a quantile regression analysis	9
Generating synthetic mixed discrete-continuous health records with mixed sum-product networks	9
Taiyi: a bilingual fine-tuned large language model for diverse biomedical tasks	9
Characterizing the macrostructure of electronic health record work using raw audit logs: an unsupervised action embeddings approach	9
Large language models in biomedicine and health: current research landscape and future directions	9
Generalizable pipeline for constructing HIV risk prediction models across electronic health record systems	9
Diagnostic accuracy of deep learning using speech samples in depression: a systematic review and meta-analysis	9
The effectiveness of a noninterruptive alert to increase prescription of take-home naloxone in emergency departments	9
Effectiveness of clinical dashboards as audit and feedback or clinical decision support tools on medication use and test ordering: a systematic review of randomized controlled trials	9
Improved intrahospital transport time via proximity-based staff assignments	9
Advancing a learning health system through biomedical and health informatics	9
Global Health Informatics: the state of research and lessons learned	9
Integrating real-world data from Brazil and Pakistan into the OMOP common data model and standardized health analytics framework to characterize COVID-19 in the Global South	9