OOIR: Observatory of International Research

Papers

(The H4-Index of Genome Research is 42. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-04-01 to 2025-04-01.)

Article	Citations
De novo reconstruction of satellite repeat units from sequence data	303
Identification of the shortest species-specific oligonucleotide sequences	209
Proxy panels enable privacy-aware outsourcing of genotype imputation	161
Spatially resolved whole transcriptome profiling in human and mouse tissue using Digital Spatial Profiling	121
Comparative genomics ofCryptosporidium parvumreveals the emergence of an outbreak-associated population in Europe and its spread to the United States	113
Short arms of human acrocentric chromosomes and the completion of the human genome sequence	109
Erratum: A butterfly pan-genome reveals that a large amount of structural variation underlies the evolution of chromatin accessibility	87
Inferring and comparing metabolism across heterogeneous sets of annotated genomes using AuCoMe	81
Extremely fast construction and querying of compacted and colored de Bruijn graphs with GGCAT	77
A butterfly pan-genome reveals that a large amount of structural variation underlies the evolution of chromatin accessibility	76
Evaluation ofN⁶-methyldeoxyadenosine antibody-based genomic profiling in eukaryotes	76
Genome-wide analysis of plant miRNA action clarifies levels of regulatory dynamics across developmental contexts	67
Accurate fusion transcript identification from long- and short-read isoform sequencing at bulk or single-cell resolution	65
Evolutionarily new genes in humans with disease phenotypes reveal functional enrichment patterns shaped by adaptive innovation and sexual selection	64
The role of transposon activity in shapingcis-regulatory element evolution after whole-genome duplication	64
Leveraging protein language models for accurate multiple sequence alignments	62
Atypical epigenetic and small RNA control of degenerated transposons and their fragments in clonally reproducingSpirodela polyrhiza	62
Ancient dog introgression into the Iberian wolf genome may have facilitated adaptation to human-dominated landscapes	62
Allele-specific RNAN⁶-methyladenosine modifications reveal functional genetic variants in human tissues	60
GenomeMUSter mouse genetic variation service enables multitrait, multipopulation data integration and analysis	59
Accurate transcriptome-wide identification and quantification of alternative polyadenylation from RNA-seq data with APAIQ	58
A Bayesian framework to study tumor subclone–specific expression by combining bulk DNA and single-cell RNA sequencing data	57
Genomic architecture constrained placental mammal X Chromosome evolution	56
Gene by environment interaction mouse model reveals a functional role for 5-hydroxymethylcytosine in neurodevelopmental disorders	56
Genomic environments scale the activities of diverse core promoters	55

Aberrant homeodomain–DNA cooperative dimerization underlies distinct developmental defects in two dominantCRXretinopathy models	54
Telomere-to-telomere assembly by preserving contained reads	54
Dynamic dysregulation of retrotransposons in neurodegenerative diseases at the single-cell level	51
Complete genomes of Asgard archaea reveal diverse integrated and mobile genetic elements	51
High-fidelity, large-scale targeted profiling of microsatellites	50
Factors impacting target-enriched long-read sequencing of resistomes and mobilomes	49
Estrogen receptor 1 chromatin profiling in human breast tumors reveals high inter-patient heterogeneity with enrichment of risk SNPs and enhancer activity at most-conserved regions	48
A scalable adaptive quadratic kernel method for interpretable epistasis analysis in complex traits	48
Comprehensive identification of genomic and environmental determinants of phenotypic plasticity in maize	46
Measuring X-Chromosome inactivation skew for X-linked diseases with adaptive nanopore sequencing	46
Mosaic loss of Chromosome Y in aged human microglia	44
Probing the eukaryotic microbes of ruminants with a deep-learning classifier and comprehensive protein databases	44
An optimized protocol for quality control of gene therapy vectors using nanopore direct RNA sequencing	44
Enabling tradeoffs in privacy and utility in genomic data Beacons and summary statistics	43
Defining the separation landscape of topological domains for decoding consensus domain organization of the 3D genome	43
The genomic basis of evolutionary differentiation among honey bees	42
Integration site–dependent HIV-1 promoter activity shapes host chromatin conformation	42
Dynamic DNAN⁶-adenine methylation (6mA) governs the encystment process, showcased in the unicellular eukaryotePseudocohnilembus persalinus	42
Single-nucleus transcriptomic mapping uncovers targets for traumatic brain injury	42