OOIR: Observatory of International Research

Papers

(The H4-Index of Genome Research is 40. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-10-01 to 2025-10-01.)

Article	Citations
The role of transposon activity in shapingcis-regulatory element evolution after whole-genome duplication	249
Dynamic dysregulation of retrotransposons in neurodegenerative diseases at the single-cell level	192
APOBEC3A drives deaminase mutagenesis in human gastric epithelium	101
Lake Malawi cichlid pangenome graph reveals extensive structural variation driven by transposable elements	96
De novo individualized disease modules reveal the synthetic penetrance of genes and inform personalized treatment regimens	90
A statistical physics approach for disease module detection	74
A chromosome-scale epigenetic map of theHydragenome reveals conserved regulators of cell state	72
Polishing copy number variant calls on exome sequencing data via deep learning	70
Unraveling the palindromic and nonpalindromic motifs of retroviral integration site sequences by statistical mixture models	69
Combinatorial microRNA activity is essential for the transition of pluripotent cells from proliferation into dormancy	67
De novo detection of somatic variants in high-quality long-read single-cell RNA sequencing data	64
Accurate fusion transcript identification from long- and short-read isoform sequencing at bulk or single-cell resolution	62
Measuring X-Chromosome inactivation skew for X-linked diseases with adaptive nanopore sequencing	62
Examining the dynamics of three-dimensional genome organization with multitask matrix factorization	59
Comparing genomic and epigenomic features across species using the WashU Comparative Epigenome Browser	59
De novo reconstruction of satellite repeat units from sequence data	58
Evolutionarily new genes in humans with disease phenotypes reveal functional enrichment patterns shaped by adaptive innovation and sexual selection	55
Comparative genomics ofCryptosporidium parvumreveals the emergence of an outbreak-associated population in Europe and its spread to the United States	54
Transposable element accumulation drives size differences among polymorphic Y Chromosomes in Drosophila	53
An efficient method to identify, date, and describe admixture events using haplotype information	52
Elasmobranch genome sequencing reveals evolutionary trends of vertebrate karyotype organization	52
Rapid SARS-CoV-2 surveillance using clinical, pooled, or wastewater sequence as a sensor for population change	50
A novel approach for in vivo DNA footprinting using short double-stranded cell-free DNA from plasma	50
Spatial Cellular Networks from omics data with SpaCeNet	49
Suv39h-catalyzed H3K9me3 is critical for euchromatic genome organization and the maintenance of gene transcription	48

Long-read genome assembly of the insect model organismTribolium castaneumreveals spread of satellite DNA in gene-rich regions by recurrent burst events	47
Ribosome decision graphs for the representation of eukaryotic RNA translation complexity	47
Functional assays inDrosophilafacilitate classification of variants of uncertain significance associated with rare diseases	46
Tissular chromatin-state cartography based on double-barcoded DNA arrays that capture unloaded PA-Tn5 transposase	46
An optimized toolkit for high-molecular-weight DNA extraction and ultra-long-read nanopore sequencing using glass beads and hexamminecobalt(III) chloride	46
Artificial intelligence and machine learning in cell-free-DNA-based diagnostics	46
Chromatin interaction maps identify oncogenic targets of enhancer duplications in cancer	45
Systematic identification of interchromosomal interaction networks supports the existence of specialized RNA factories	45
Advancing genomic technologies and clinical awareness accelerates discovery of disease-associated tandem repeat sequences	44
Density separation of petrous bone powders for optimized ancient DNA yields	44
Low-frequency somatic copy number alterations in normal human lymphocytes revealed by large-scale single-cell whole-genome profiling	44
Global compositional and functional states of the human gut microbiome in health and disease	42
Corrigendum: A sheep pangenome reveals the spectrum of structural variations and their effects on tail phenotypes	41
Transposable elements drive the evolution of metazoan zinc finger genes	41
Historical RNA expression profiles from the extinct Tasmanian tiger	40