Journal of Microbiology

Article	Citations
Introducing EzAAI: a pipeline for high throughput calculations of prokaryotic average amino acid identity	163
UBCG2: Up-to-date bacterial core genes and pipeline for phylogenomic analysis	89
Potential of Bacillus velezensis as a probiotic in animal feed: a review	49
Linking the gut microbiota to persistent symptoms in survivors of COVID-19 after discharge	43
Dissection of plant microbiota and plant-microbiome interactions	35
Devosia rhizoryzae sp. nov., and Devosia oryziradicis sp. nov., novel plant growth promoting members of the genus Devosia, isolated from the rhizosphere of rice plants	34
Omics in gut microbiome analysis	33
Prokaryotic DNA methylation and its functional roles	33
Raloxifene as a treatment option for viral infections	32
GABA-producing Lactobacillus plantarum inhibits metastatic properties and induces apoptosis of 5-FU-resistant colorectal cancer cells via GABAB receptor signaling	29
The effects of cigarettes and alcohol on intestinal microbiota in healthy men	27
Development of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) thermal inactivation method with preservation of diagnostic sensitivity	27
Gain and loss of antibiotic resistant genes in multidrug resistant bacteria: One Health perspective	25
Anti-inflammatory and anti-oxidative effect of Korean propolis on Helicobacter pylori-induced gastric damage in vitro	24
Description of Microbacterium luteum sp. nov., Microbacterium cremeum sp. nov., and Microbacterium atlanticum sp. nov., three novel C50 carotenoid producing bacteria	24
Lactobacillus plantarum-derived metabolites sensitize the tumor-suppressive effects of butyrate by regulating the functional expression of SMCT1 in 5-FU-resistant colorectal cancer cells	23
Rediscovery of antimicrobial peptides as therapeutic agents	23
Description of Nocardioides piscis sp. nov., Sphingomonas piscis sp. nov. and Sphingomonas sinipercae sp. nov., isolated from the intestine of fish species Odontobutis interrupta (Korean spotted sleep	23
Leucobacter coleopterorum sp. nov., Leucobacter insecticola sp. nov., and Leucobacter viscericola sp. nov., isolated from the intestine of the diving beetles, Cybister brevis and Cybister lewisianus,	21
SARS-CoV-2-mediated evasion strategies for antiviral interferon pathways	21
Intervention with kimchi microbial community ameliorates obesity by regulating gut microbiota	20
A study of P release from Fe-P and Ca-P via the organic acids secreted by Aspergillus niger	20
Current status and perspectives on vaccine development against dengue virus infection	20
Short-term effects of returning granulated straw on soil microbial community and organic carbon fractions in dryland farming	19
A comprehensive review of SARS-CoV-2 genetic mutations and lessons from animal coronavirus recombination in one health perspective	19

Phytochemicals for the treatment of COVID-19	19
Nanoparticle and virus-like particle vaccine approaches against SARS-CoV-2	19
Melatonin attenuates microbiota dysbiosis of jejunum in short-term sleep deprived mice	19
Recent advances in the development of β-lactamase inhibitors	18
The rapid adaptation of SARS-CoV-2–rise of the variants: transmission and resistance	17
Brevibacterium limosum sp. nov., Brevibacterium pigmenatum sp. nov., and Brevibacterium atlanticum sp. nov., three novel dye decolorizing actinobacteria isolated from ocean sediments	17
The synergy effect of arbuscular mycorrhizal fungi symbiosis and exogenous calcium on bacterial community composition and growth performance of peanut (Arachis hypogaea L.) in saline alkali soil	17
Overview of bioinformatic methods for analysis of antibiotic resistome from genome and metagenome data	16
Different distribution patterns of microorganisms between aquaculture pond sediment and water	16
Microbial phenomics linking the phenotype to function: The potential of Raman spectroscopy	16
The quorum sensing regulator OpaR is a repressor of polar flagellum genes in Vibrio parahaemolyticus	16
Variations of microbial community in Aconitum carmichaeli Debx. rhizosphere soilin a short-term continuous cropping system	16
Ammonia-oxidizing archaea in biological interactions	15
Description of Vagococcus coleopterorum sp. nov., isolated from the intestine of the diving beetle, Cybister lewisianus, and Vagococcus hydrophili sp. nov., isolated from the intestine of the dark div	15
Lactobacillus-derived metabolites enhance the antitumor activity of 5-FU and inhibit metastatic behavior in 5-FU-resistant colorectal cancer cells by regulating claudin-1 expression	15
Fungal diversity in deep-sea sediments from Magellan seamounts environment of the western Pacific revealed by high-throughput Illumina sequencing	14
Production and characterization of melanin pigments derived from Amorphotheca resinae	14
COVID-19 vaccine development based on recombinant viral and bacterial vector systems: combinatorial effect of adaptive and trained immunity	14
Genetic diversity and population structure of the amylolytic yeast Saccharomycopsis fibuligera associated with Baijiu fermentation in China	14
Influences of genetically perturbing synthesis of the typical yellow pigment on conidiation, cell wall integrity, stress tolerance, and cellulase production in Trichoderma reesei	14
Comparative genomics analysis of Pediococcus acidilactici species	13
High-throughput cultivation based on dilution-to-extinction with catalase supplementation and a case study of cultivating acI bacteria from Lake Soyang	13
The human symbiont Bacteroides thetaiotaomicron promotes diet-induced obesity by regulating host lipid metabolism	13
Effects of digested Cheonggukjang on human microbiota assessed by in vitro fecal fermentation	13
Probiotic supplements alleviate gestational diabetes mellitus by restoring the diversity of gut microbiota: a study based on 16S rRNA sequencing	13
Microbial source tracking using metagenomics and other new technologies	13
Aequoribacter fuscus gen. nov., sp. nov., a new member of the family Halieaceae, isolated from coastal seawater	13
Inferences in microbial structural signatures of acne microbiome and mycobiome	13
Oecophyllibacter saccharovorans gen. nov. sp. nov., a bacterial symbiont of the weaver ant Oecophylla smaragdina	13
Performance comparison of fecal preservative and stock solutions for gut microbiome storage at room temperature	12
Two years of COVID-19 pandemic: where are we now?	12
Role of melatonin in murine “restraint stress”-induced dysfunction of colonic microbiota	12
Description of Ornithinimicrobium ciconiae sp. nov., and Ornithinimicrobium avium sp. nov., isolated from the faeces of the endangered and near-threatened birds	12
Endophytic bacterial and fungal microbiota in different cultivars of cassava (Manihot esculenta Crantz)	12
Effects of mycosubtilin homolog algicides from a marine bacterium, Bacillus sp. SY-1, against the harmful algal bloom species Cochlodinium polykrikoides	11
Regulation of the AcrAB efflux system by the quorum-sensing regulator AnoR in Acinetobacter nosocomialis	11
Regulation of gene expression by protein lysine acetylation in Salmonella	11
Bacterial bug-out bags: outer membrane vesicles and their proteins and functions	11
Gene deletion and constitutive expression of the pectate lyase gene 1 (MoPL1) lead to diminished virulence of Magnaporthe oryzae	11
Comparative analysis of type 2 diabetes-associated gut microbiota between Han and Mongolian people	11
Effects of multi-species probiotic supplementation on alcohol metabolism in rats	10
Distinct gut microbiotas between southern elephant seals and Weddell seals of Antarctica	10
Anti-MRSA agent discovery using Caenorhabditis elegans-based high-throughput screening	10
Gold nanoparticle-DNA aptamer-assisted delivery of antimicrobial peptide effectively inhibits Acinetobacter baumannii infection in mice	10
Deep convolutional neural network: a novel approach for the detection of Aspergillus fungi via stereomicroscopy	10
Diversity and composition of microbiota during fermentation of traditional Nuodeng ham	9
NF-κB/ROS and ERK pathways regulate NLRP3 inflammasome activation in Listeria monocytogenes infected BV2 microglia cells	9
Coronavirus enzyme inhibitors-experimentally proven natural compounds from plants	9
Screening of small molecules attenuating biofilm formation of Acinetobacter baumannii by inhibition of ompA promoter activity	9
Characterization of a novel dsRNA mycovirus of Trichoderma atroviride NFCF377 reveals a member of “Fusagraviridae” with changes in antifungal activity of the host fungus	9

Development of a real-time loop-mediated isothermal amplification method for the detection of severe fever with thrombocytopenia syndrome virus	9
Chitosan-chelated zinc modulates cecal microbiota and attenuates inflammatory response in weaned rats challenged with Escherichia coli	9
Application of computational approaches to analyze metagenomic data	9
Simultaneous detection of Salmonella spp., Pseudomonas aeruginosa, Bacillus cereus, and Escherichia coli O157:H7 in environmental water using PMA combined with mPCR	9
Biosynthesis of adipic acid in metabolically engineered Saccharomyces cerevisiae	9
Metaviromics coupled with phage-host identification to open the viral ‘black box’	9
The inner membrane protein LapB is required for adaptation to cold stress in an LpxC-independent manner	8
Ganoderma boninense mycelia for phytochemicals and secondary metabolites with antibacterial activity	8
Pathogenomics of Streptococcus ilei sp. nov., a newly identified pathogen ubiquitous in human microbiome	8
Pikeienuella piscinae gen. nov., sp. nov., a novel genus in the family Rhodobacteraceae	8
Detection of colistin-resistant populations prior to antibiotic exposure in KPC-2-producing Klebsiella pneumoniae clinical isolates	8
T cell responses to SARS-CoV-2 in humans and animals	8
Salicibibacter cibarius sp. nov. and Salicibibacter cibi sp. nov., two novel species of the family Bacillaceae isolated from kimchi	8
Inhibitory effects of piceatannol on human cytomegalovirus (hCMV) in vitro	8
Transmissibility and pathogenicity of SARS-CoV-2 variants in animal models	8
Lysobacter arenosi sp. nov. and Lysobacter solisilvae sp. nov. isolated from soil	8
Influence of dragon bamboo with different planting patterns on microbial community and physicochemical property of soil on sunny and shady slopes	8
The comparison of microbial communities in thyroid tissues from thyroid carcinoma patients	8
Biophysical characterization of antibacterial compounds derived from pathogenic fungi Ganoderma boninense	8
Effect of exopolysaccharides of Paenibacillus polymyxa rhizobacteria on physiological and morphological variables of wheat seedlings	7
Omp16, a conserved peptidoglycan-associated lipoprotein, is involved in Brucella virulence in vitro	7
Phosphate sugar isomerases and their potential for rare sugar bioconversion	7
Mst1/2-ALK promotes NLRP3 inflammasome activation and cell apoptosis during Listeria monocytogenes infection	7
Erratum to: Aeromicrobium endophyticum sp. nov., an endophytic actinobacterium isolated from reed (Phragmites australis)	7
Direct current exerts electricidal and bioelectric effects on Porphyromonas gingivalis biofilms partially via promoting oxidative stress and antibiotic transport	7
The osmotic stress response operon betIBA is under the functional regulation of BetI and the quorum-sensing regulator AnoR in Acinetobacter nosocomialis	6
Assessment of Cre-lox and CRISPR-Cas9 as tools for recycling of multiple-integrated selection markers in Saccharomyces cerevisiae	6
Caspase-3 inhibitor inhibits enterovirus D68 production	6
Effect of biostimulation and bioaugmentation on hydrocarbon degradation and detoxification of diesel-contaminated soil: a microcosm study	6
Raman spectroscopy reveals alteration of spore compositions under different nutritional conditions in Lysinibacillus boronitolerans YS11	6
Antiviral effects of human placenta hydrolysate (Laennec®) against SARS-CoV-2 in vitro and in the ferret model	6
Genetic linkage map construction and quantitative trait loci mapping of agronomic traits in Gloeostereum incarnatum	6
The effects of deletion of cellobiohydrolase genes on carbon source-dependent growth and enzymatic lignocellulose hydrolysis in Trichoderma reesei	6
Potato tillage method is associated with soil microbial communities, soil chemical properties, and potato yield	6
Insights into the immune responses of SARS-CoV-2 in relation to COVID-19 vaccines	6
Promoter exchange of the cryptic nonribosomal peptide synthetase gene for oligopeptide production in Aspergillus oryzae	6
Activity of Lactobacillus crispatus isolated from vaginal microbiota against Mycobacterium tuberculosis	6
Characterization and bioefficacy of green nanosilver particles derived from fungicide-tolerant Tricho-fusant for efficient biocontrol of stem rot (Sclerotium rolfsii Sacc.) in groundnut (Arachis hypog	6
Envelope-Stress Sensing Mechanism of Rcs and Cpx Signaling Pathways in Gram-Negative Bacteria	6
Characterization of a novel phage depolymerase specific to Escherichia coli O157:H7 and biofilm control on abiotic surfaces	6
Potential roles of condensin in genome organization and beyond in fission yeast	6
A mucin-responsive hybrid two-component system controls Bacteroides thetaiotaomicron colonization and gut homeostasis	5
Salmonella Typhimurium ST313 isolated in Brazil revealed to be more invasive and inflammatory in murine colon compared to ST19 strains	5
Vibrio vulnificus PlpA facilitates necrotic host cell death induced by the pore forming MARTX toxin	5
Silver Nanoparticles Modified with Polygonatum sibiricum Polysaccharide Improve Biocompatibility and Infected Wound Bacteriostasis	5
Omics-based microbiome analysis in microbial ecology: from sequences to information	5
Rhizosphere Microbial Community and Metabolites of Susceptible and Resistant Tobacco Cultivars to Bacterial Wilt	5
Similarities and differences between 6S RNAs from Bradyrhizobium japonicum and Sinorhizobium meliloti	5
The effect of the HRB linker of Newcastle disease virus fusion protein on the fusogenic activity	5
Changes in the microbial community of Litopenaeus vannamei larvae and rearing water during different growth stages after disinfection treatment of hatchery water	5
Bacterial Crosstalk via Antimicrobial Peptides on the Human Skin: Therapeutics from a Sustainable Perspective	5
Phosphorylation of tegument protein pp28 contributes to trafficking to the assembly compartment in human cytomegalovirus infection	5
Gut Lactobacillus and Probiotics Lactobacillus lactis/rhamnosis Ameliorate Liver Fibrosis in Prevention and Treatment	5
WasC, a WASP family protein, is involved in cell adhesion and migration through regulation of F-actin polymerization in Dictyostelium	5
Coordinated regulation of interferon and inflammasome signaling pathways by SARS-CoV-2 proteins	5
Effects of rehydration on physiological and transcriptional responses of a water-stressed rhizobium	4
Minor and major circRNAs in virus and host genomes	4
Epidemiological Characteristics of Norovirus Outbreaks in Shenyang from 2017 to 2021	4
Middle East Respiratory Syndrome coronavirus vaccine development: updating clinical studies using platform technologies	4
Agromyces laixinhei sp. nov. isolated from bat feces in China	4
Paenibacillus lycopersici sp. nov. and Paenibacillus rhizovicinus sp. nov., isolated from the rhizosphere of tomato (Solanum lycopersicum)	4
Recent Advances in CRISPR-Cas Technologies for Synthetic Biology	4
Effects of Continuous Straw Returning on Soil Functional Microorganisms and Microbial Communities	4
The putative sensor histidine kinase VadJ coordinates development and sterigmatocystin production in Aspergillus nidulans	4
Azohydromonas aeria sp. nov., isolated from air	4
Trans-acting regulators of ribonuclease activity	4
Influence of Microbiota on Vaccine Effectiveness: “Is the Microbiota the Key to Vaccine-induced Responses?”	4
Temperature Matters: Bacterial Response to Temperature Change	4
Iron interferes with quorum sensing-mediated cooperation in Pseudomonas aeruginosa by affecting the expression of ppyR and mexT, in addition to rhlR	4
Function of Rhs proteins in porcine extraintestinal pathogenic Escherichia coli PCN033	4
Characterization of staphylococcal endolysin LysSAP33 possessing untypical domain composition	4
Rab27b regulates extracellular vesicle production in cells infected with Kaposi’s sarcoma-associated herpesvirus to promote cell survival and persistent infection	4
Erratum to: Description of Vagococcus coleopterorum sp. nov., isolated from the intestine of the diving beetle, Cybister lewisianus, and Vagococcus hydrophili sp. nov., isolated from the intestine of	4
Manganese Transporter Proteins in Salmonella enterica serovar Typhimurium	4
The cytoplasmic loops of AgrC contribute to the quorum-sensing activity of Staphylococcus aureus	4
Proteomic analysis reveals the temperature-dependent presence of extracytoplasmic peptidases in the biofilm exoproteome of Listeria monocytogenes EGD-e	4
CXCL12/CXCR4 Axis is Involved in the Recruitment of NK Cells by HMGB1 Contributing to Persistent Airway Inflammation and AHR During the Late Stage of RSV Infection	4
Response of sheep rumen fermentation and microbial communities to feed infected with the endophyte Epichloë gansuensis as evaluated with rumen-simulating technology	4
The role of Jacalin-related lectin gene AOL_s00083g511 in the development and pathogenicity of the nematophagous fungus Arthrobotrys oligospora	3
The relationship between bacterial diversity and organic carbon mineralization in soft rock and sand compound soil	3

Heterologous Production and Structure Determination of a New Lanthipeptide Sinosporapeptin Using a Cryptic Gene Cluster in an Actinobacterium Sinosporangium siamense	3
The type II histidine triad protein HtpsC facilitates invasion of epithelial cells by highly virulent Streptococcus suis serotype 2	3
Protective and pathogenic role of humoral responses in COVID-19	3
Vaginal Microbiome Dysbiosis is Associated with the Different Cervical Disease Status	3
Isolation and characterization of tick-borne Roseomonas haemaphysalidis sp. nov. and rodent-borne Roseomonas marmotae sp. nov.	3
Meiotic prophase roles of Pds5 in recombination and chromosome condensation in budding yeast	3
CagL polymorphisms between East Asian and Western Helicobacter pylori are associated with different abilities to induce IL-8 secretion	3
Crystal structure of human LC8 bound to a peptide from Ebola virus VP35	3
Metformin Regulates Gut Microbiota Abundance to Suppress M2 Skewing of Macrophages and Colorectal Tumorigenesis in Mice	3
Molecular characterization of Hsf1 as a master regulator of heat shock response in the thermotolerant methylotrophic yeast Ogataea parapolymorpha	3
Analyses of DNA double-strand break repair pathways in tandem arrays of HXT genes of Saccharomyces cerevisiae	3
Functional characterization of HigBA toxin-antitoxin system in an Arctic bacterium, Bosea sp. PAMC 26642	3
Soil water content as a critical factor for stable bacterial community structure and degradative activity in maritime Antarctic soil	3
The “Cins” of Our Fathers: Rejuvenated Interest in Colicins to Combat Drug Resistance	3
Functional and structural characterization of Deinococcus radiodurans R1 MazEF toxin-antitoxin system, Dr0416-Dr0417	3
Stenotrophomonas maltophilia outer membrane protein A induces epithelial cell apoptosis via mitochondrial pathways	3
Evolutionary analysis and protein family classification of chitin deacetylases in Cryptococcus neoformans	3
Molecular characterization of the Saccharomycopsis fibuligera ATF genes, encoding alcohol acetyltransferase for volatile acetate ester formation	3
Isolation of a novel strain, Sphingorhabdus sp. YGSMI21 and characterization of its enantioselective epoxide hydrolase activity	3
The small RNA RsaF regulates the expression of secreted virulence factors in Staphylococcus aureus Newman	3
Adenosylhomocysteinase like 1 interacts with nonstructural 5A and regulates hepatitis C virus propagation	3
Incomplete autophagy promotes the replication of Mycoplasma hyopneumoniae	3