OOIR: Observatory of International Research

Papers

(The TQCC of Journal of Microbiology is 9. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-05-01 to 2024-05-01.)

Article	Citations
Introducing EzAAI: a pipeline for high throughput calculations of prokaryotic average amino acid identity	163
UBCG2: Up-to-date bacterial core genes and pipeline for phylogenomic analysis	89
Potential of Bacillus velezensis as a probiotic in animal feed: a review	49
Linking the gut microbiota to persistent symptoms in survivors of COVID-19 after discharge	43
Dissection of plant microbiota and plant-microbiome interactions	35
Devosia rhizoryzae sp. nov., and Devosia oryziradicis sp. nov., novel plant growth promoting members of the genus Devosia, isolated from the rhizosphere of rice plants	34
Omics in gut microbiome analysis	33
Prokaryotic DNA methylation and its functional roles	33
Raloxifene as a treatment option for viral infections	32
GABA-producing Lactobacillus plantarum inhibits metastatic properties and induces apoptosis of 5-FU-resistant colorectal cancer cells via GABAB receptor signaling	29
The effects of cigarettes and alcohol on intestinal microbiota in healthy men	27
Development of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) thermal inactivation method with preservation of diagnostic sensitivity	27
Gain and loss of antibiotic resistant genes in multidrug resistant bacteria: One Health perspective	25
Anti-inflammatory and anti-oxidative effect of Korean propolis on Helicobacter pylori-induced gastric damage in vitro	24
Description of Microbacterium luteum sp. nov., Microbacterium cremeum sp. nov., and Microbacterium atlanticum sp. nov., three novel C50 carotenoid producing bacteria	24
Lactobacillus plantarum-derived metabolites sensitize the tumor-suppressive effects of butyrate by regulating the functional expression of SMCT1 in 5-FU-resistant colorectal cancer cells	23
Rediscovery of antimicrobial peptides as therapeutic agents	23
Description of Nocardioides piscis sp. nov., Sphingomonas piscis sp. nov. and Sphingomonas sinipercae sp. nov., isolated from the intestine of fish species Odontobutis interrupta (Korean spotted sleep	23
Leucobacter coleopterorum sp. nov., Leucobacter insecticola sp. nov., and Leucobacter viscericola sp. nov., isolated from the intestine of the diving beetles, Cybister brevis and Cybister lewisianus,	21
SARS-CoV-2-mediated evasion strategies for antiviral interferon pathways	21
Intervention with kimchi microbial community ameliorates obesity by regulating gut microbiota	20
A study of P release from Fe-P and Ca-P via the organic acids secreted by Aspergillus niger	20
Current status and perspectives on vaccine development against dengue virus infection	20
Short-term effects of returning granulated straw on soil microbial community and organic carbon fractions in dryland farming	19
A comprehensive review of SARS-CoV-2 genetic mutations and lessons from animal coronavirus recombination in one health perspective	19

Phytochemicals for the treatment of COVID-19	19
Nanoparticle and virus-like particle vaccine approaches against SARS-CoV-2	19
Melatonin attenuates microbiota dysbiosis of jejunum in short-term sleep deprived mice	19
Recent advances in the development of β-lactamase inhibitors	18
The synergy effect of arbuscular mycorrhizal fungi symbiosis and exogenous calcium on bacterial community composition and growth performance of peanut (Arachis hypogaea L.) in saline alkali soil	17
The rapid adaptation of SARS-CoV-2–rise of the variants: transmission and resistance	17
Brevibacterium limosum sp. nov., Brevibacterium pigmenatum sp. nov., and Brevibacterium atlanticum sp. nov., three novel dye decolorizing actinobacteria isolated from ocean sediments	17
Variations of microbial community in Aconitum carmichaeli Debx. rhizosphere soilin a short-term continuous cropping system	16
Overview of bioinformatic methods for analysis of antibiotic resistome from genome and metagenome data	16
Different distribution patterns of microorganisms between aquaculture pond sediment and water	16
Microbial phenomics linking the phenotype to function: The potential of Raman spectroscopy	16
The quorum sensing regulator OpaR is a repressor of polar flagellum genes in Vibrio parahaemolyticus	16
Ammonia-oxidizing archaea in biological interactions	15
Description of Vagococcus coleopterorum sp. nov., isolated from the intestine of the diving beetle, Cybister lewisianus, and Vagococcus hydrophili sp. nov., isolated from the intestine of the dark div	15
Lactobacillus-derived metabolites enhance the antitumor activity of 5-FU and inhibit metastatic behavior in 5-FU-resistant colorectal cancer cells by regulating claudin-1 expression	15
Fungal diversity in deep-sea sediments from Magellan seamounts environment of the western Pacific revealed by high-throughput Illumina sequencing	14
Production and characterization of melanin pigments derived from Amorphotheca resinae	14
COVID-19 vaccine development based on recombinant viral and bacterial vector systems: combinatorial effect of adaptive and trained immunity	14
Genetic diversity and population structure of the amylolytic yeast Saccharomycopsis fibuligera associated with Baijiu fermentation in China	14
Influences of genetically perturbing synthesis of the typical yellow pigment on conidiation, cell wall integrity, stress tolerance, and cellulase production in Trichoderma reesei	14
Comparative genomics analysis of Pediococcus acidilactici species	13
High-throughput cultivation based on dilution-to-extinction with catalase supplementation and a case study of cultivating acI bacteria from Lake Soyang	13
The human symbiont Bacteroides thetaiotaomicron promotes diet-induced obesity by regulating host lipid metabolism	13
Effects of digested Cheonggukjang on human microbiota assessed by in vitro fecal fermentation	13
Probiotic supplements alleviate gestational diabetes mellitus by restoring the diversity of gut microbiota: a study based on 16S rRNA sequencing	13
Microbial source tracking using metagenomics and other new technologies	13
Aequoribacter fuscus gen. nov., sp. nov., a new member of the family Halieaceae, isolated from coastal seawater	13
Inferences in microbial structural signatures of acne microbiome and mycobiome	13
Oecophyllibacter saccharovorans gen. nov. sp. nov., a bacterial symbiont of the weaver ant Oecophylla smaragdina	13
Performance comparison of fecal preservative and stock solutions for gut microbiome storage at room temperature	12
Two years of COVID-19 pandemic: where are we now?	12
Role of melatonin in murine “restraint stress”-induced dysfunction of colonic microbiota	12
Description of Ornithinimicrobium ciconiae sp. nov., and Ornithinimicrobium avium sp. nov., isolated from the faeces of the endangered and near-threatened birds	12
Endophytic bacterial and fungal microbiota in different cultivars of cassava (Manihot esculenta Crantz)	12
Comparative analysis of type 2 diabetes-associated gut microbiota between Han and Mongolian people	11
Effects of mycosubtilin homolog algicides from a marine bacterium, Bacillus sp. SY-1, against the harmful algal bloom species Cochlodinium polykrikoides	11
Regulation of the AcrAB efflux system by the quorum-sensing regulator AnoR in Acinetobacter nosocomialis	11
Regulation of gene expression by protein lysine acetylation in Salmonella	11
Bacterial bug-out bags: outer membrane vesicles and their proteins and functions	11
Gene deletion and constitutive expression of the pectate lyase gene 1 (MoPL1) lead to diminished virulence of Magnaporthe oryzae	11
Deep convolutional neural network: a novel approach for the detection of Aspergillus fungi via stereomicroscopy	10
Effects of multi-species probiotic supplementation on alcohol metabolism in rats	10
Distinct gut microbiotas between southern elephant seals and Weddell seals of Antarctica	10
Anti-MRSA agent discovery using Caenorhabditis elegans-based high-throughput screening	10
Gold nanoparticle-DNA aptamer-assisted delivery of antimicrobial peptide effectively inhibits Acinetobacter baumannii infection in mice	10
Diversity and composition of microbiota during fermentation of traditional Nuodeng ham	9
NF-κB/ROS and ERK pathways regulate NLRP3 inflammasome activation in Listeria monocytogenes infected BV2 microglia cells	9
Coronavirus enzyme inhibitors-experimentally proven natural compounds from plants	9
Screening of small molecules attenuating biofilm formation of Acinetobacter baumannii by inhibition of ompA promoter activity	9
Characterization of a novel dsRNA mycovirus of Trichoderma atroviride NFCF377 reveals a member of “Fusagraviridae” with changes in antifungal activity of the host fungus	9

Development of a real-time loop-mediated isothermal amplification method for the detection of severe fever with thrombocytopenia syndrome virus	9
Chitosan-chelated zinc modulates cecal microbiota and attenuates inflammatory response in weaned rats challenged with Escherichia coli	9
Application of computational approaches to analyze metagenomic data	9
Simultaneous detection of Salmonella spp., Pseudomonas aeruginosa, Bacillus cereus, and Escherichia coli O157:H7 in environmental water using PMA combined with mPCR	9
Biosynthesis of adipic acid in metabolically engineered Saccharomyces cerevisiae	9
Metaviromics coupled with phage-host identification to open the viral ‘black box’	9