Journal of Applied Genetics

Article	Citations
A simple and unified protocol to purify all seven Escherichia coli RNA polymerase sigma factors	31
The molecular puzzle of autoinflammatory skin diseases—a review of chosen conditions	23
Circular RNA circ_0000119 promotes cervical cancer cell growth and migration via miR-433-3p/PAK2 axis	23
Complementarity of biomarker screening and genetic analyses based on the case of an attenuated multiple sulfatase deficiency	23
Genetic analysis of novel resistance sources and genome-wide association mapping identified novel QTLs for resistance to Zymoseptoria tritici, the causal agent of septoria tritici blotch in wheat	20
Genetic diversity and population structure of Uganda cassava germplasm	18
In search of the relationship between the rye polyamine oxidase (PAO) gene and resistance to powdery mildew (PM)	18
Experimental and in silico analysis of LINC01279 expression in tumor of patients with breast cancer	18
Genetic and genomic characterization followed by single-step genomic evaluation of withers height in German Warmblood horses	18
Spinocerebellar ataxia 27B (SCA27B)—a systematic review and a case report of a Polish family	16
Strigolactone insensitivity affects differential shoot and root transcriptome in barley	15
Antibiotic resistance and its correlation with biofilm formation and virulence genes in Klebsiella pneumoniae isolated from wounds	15
Genetic diversity and selection signatures in sheep breeds	14
Field response and molecular screening of European wheat germplasm against powdery mildew at the Himalayan region of Pakistan	14
Mutations within gene XNR_2147 for TetR-like protein enhance lincomycin resistance and endogenous specialized metabolism of Streptomyces albus J1074	13
Correction to: Diallel analysis of common bean (Phaseolus vulgaris L.) genotypes for seed dietary fibre, carbohydrate, calcium and phosphorus contents	13
High expression of ACKR1 predicts a good prognosis and suppresses sarcoma cell progression via regulating the tumor immune microenvironment	13
Genome-wide identification of genetic determinants for gall midge resistance in rice using genic markers	13
MicroRNA in lung cancer—a novel potential way for early diagnosis and therapy	13
Genetic analysis of common bean (Phaseolus vulgaris L.) genotypes for root traits, yield components and seed yield	12
Uncovering the role of aquaporin and chromobox family members as potential biomarkers in head and neck squamous cell carcinoma via integrative multiomics and in silico approach	12
Deciphering early responsive signature genes in rice blast disease: an integrated temporal transcriptomic study	12
Multi-trait stability index in the selection of high-yielding and stable barley genotypes	12
Identification of novel biallelic mutations in CFAP53 associated with fetal situs inversus totalis and literature review	12
Commentary on “Poor evidence for host-dependent regular RNA editing in the transcriptome of SARS-CoV-2”	12

An updated molecular toolkit for genomics-assisted breeding of waxy sorghum [Sorghum bicolor (L.) Moench]	11
Polymorphic insertions of DcSto miniature inverted-repeat transposable elements reveal genetic diversity structure within the cultivated carrot	11
Structure and functions of a multireplicon genome of Antarctic Psychrobacter sp. ANT_H3: characterization of the genetic modules suitable for the construction of the plasmid-vectors for cold-active ba	11
Carfilzomib resistance in multiple myeloma: A comparative metabolomic analysis	11
Bioherbicidal potential of Bacillus altitudinis D30202 on Avena fatua L.: a whole-genome sequencing analysis	11
Heritability of chronic thermal tolerance and genetic correlations with growth traits in the Pacific oyster (Crassostrea gigas)	10
Correction to: Complete chloroplast genome sequence of Camellia sinensis: genome structure, adaptive evolution, and phylogenetic relationships	8
Identification of trait-associated microRNA modules in liver transcriptome of pig fed with PUFAs-enriched supplementary diet	8
TGFα-EGFR pathway in breast carcinogenesis, association with WWOX expression and estrogen activation	8
MiR-1976 affects lung squamous cell carcinoma development by targeting NCAPH	8
Endophytic fungal communities of Calicotome spinosa—an important medicinal plant of Tizi-Ouzou (Algeria)	8
Bioinformatics screening of prognostic immune-related genes in renal clear cell carcinoma	8
Identifying key genes and functionally enriched pathways in acute myeloid leukemia by weighted gene co-expression network analysis	7
Genetic analysis of purple pigmentation in rice seed and vegetative parts — implications on developing high-yielding purple rice (Oryza sativa L.)	7
NADPH oxidase 4-mediating oxidative stress contributes to endometriosis	7
Elucidating the transcriptomic response of adult-derived mHypoA-2/12 mouse hypothalamic neuron cell line to cannabidiol (CBD) exposure	7
Association of ACE and AGTR1 variants with retinopathy of prematurity: a case–control study and meta-analysis	7
Identification of potential biomarkers for melanoma cancer (black tumor) using bioinformatics strategy: a study based on GEO and SRA datasets	7
Variants of the CASP9 gene as candidate markers for primary response to anti-TNF therapy in Crohn’s disease patients	7
Rare co-existence of 15q26 deletion syndrome and lymphangioleiomyomatosis: diagnostic and therapeutic challenge	7
Up-regulated mRNA expression of VEGFA receptors (FLT1 and KDR) in placentas after assisted reproductive technology fertilization	7
Rare T-box variants in adult pulmonary arterial hypertension with congenital heart disease	7
QTL mapping for adult plant resistance to wheat stripe rust in M96-5 × Guixie 3 wheat population	7
Oat species and interspecific amphiploids show predominance of diploid nuclei in the syncytial endosperm	6
From cytogenetics to cytogenomics: a new era in the diagnosis of chromosomal abnormalities in domestic animals	6
Comprehensive bioinformatics analysis reveals the oncogenic role of FoxM1 and its impact on prognosis, immune microenvironment, and drug sensitivity in osteosarcoma	6
MicroRNA bioinformatics in precision oncology: an integrated pipeline from NGS to AI-based target discovery	6
Exploring genomic inbreeding and selection signatures in a commercial Brangus herd through functional annotation	6
Are head and neck versus abdominal paragangliomas driven by different single nucleotide events?	6
Further evidence for a wide phenotypic and mutational spectrum of Cohen syndrome: case report and literature review	6
What, how, and why? – anti-EHEC phages and their application potential in medicine and food industry	6
Single-cell integrated transcriptomics reveals the role of keratinocytes in head and neck squamous cell carcinoma	5
Identification of quantitative trait loci for in vitro plant regeneration from leaf microexplants in cucumber (Cucumis sativus L.)	5
Oligogenic risk score for Gilles de la Tourette syndrome reveals a genetic continuum of tic disorders	5
GGE biplot analysis for cane yield and sugar yield in advanced clones of sugarcane (Saccharum sp. complex)	5
Cellular and molecular changes in mucopolysaccharidosis-plus syndrome caused by a homozygous c.599G > C (p.Arg200Pro) variant of the VPS33A gene	5
Investigation of the biofilm formation in extra-intestinal pathogenic Escherichia coli ST131 strains and its correlation with the presence of fimH, afa, and kpsMSTII genes	5
Identification of a migracytosis and angiogenesis-associated lncRNAs signature in immunotherapy in breast cancer	5
Identification of subtropical breeding lines for ideal plant architecture in maize through multiple selection indices	5
Bioinformatics to analyze the differentially expressed genes in different degrees of Alzheimer’s disease and their roles in progress of the disease	5
Novel FOXP2 variant associated with speech and language dysfunction in a Chinese family and literature review	5
Haplotypes affecting stillbirth and fertility in Icelandic Dairy Cattle	5
Separating gene clustering in the rare mucopolysaccharidosis disease	5
Giardia fibrillarin: a bioinformatics exploration of sequence and structure	5
Strigolactones modulate jasmonate-dependent transcriptional reprogramming during wound signalling in Arabidopsis	5
Application of a custom NGS gene panel revealed a high diagnostic utility for molecular testing of hereditary ataxias	5
The role of the CEBPB gene in porcine adipogenesis: a study using CRISPR/Cas9-edited mesenchymal stem cells	5
Development of novel gene-based markers for waxy1 gene and their validation for exploitation in molecular breeding for enhancement of amylopectin in maize	4
Integration of genome-wide association studies reveal loci associated with salt tolerance score of rice at the seedling stage	4
Genome-wide identification and characterization of glutathione S-transferase gene family in Musa acuminata L. AAA group and gaining an insight to their role in banana fruit development	4

Identification of eQTLs and differential gene expression associated with fetal programming in beef cattle	4
FGFR3 and FGFR4 overexpression in juvenile nasopharyngeal angiofibroma: impact of smoking history and implications for personalized management	4
Blood-based microRNA profiling unveils complex molecular dynamics in breast cancer	4
Transcriptome profiling and metabolic pathway analysis towards reliable biomarker discovery in early-stage lung cancer	4
Integrative multiomics and weighted network approach reveals the prognostic role of RPS7 in lung squamous cell carcinoma pathogenesis	4
Identification of Laportea bulbifera using the complete chloroplast genome as a potentially effective super-barcode	4
RNA-Seq transcriptome profiling of Nile rat livers reveals novel insights on the anti-diabetic mechanisms of Water-Soluble Palm Fruit Extract	4
Correction to: Unjustly forgotten scientist Wacław Mayzel (1847–1916)—co‑discoverer of somatic mitosis	4
The mitogenomes characterization of two Peltigera species (Peltigera elisabethae and Peltigera polydactylon) and comparative mitogenomic analyses of six Peltigera	4
The effect of library preparation protocol on the efficiency of heteroplasmy detection in mitochondrial DNA using two massively parallel sequencing Illumina systems	4
Epidemiology of Streptococcus pyogenes upper respiratory tract infections in Poland (2003–2017)	4
Urofacial (Ochoa) syndrome with a founder pathogenic variant in the HPSE2 gene: a case report and mutation origin	4
Review of applications of artificial intelligence (AI) methods in crop research	4
Using machine learning and partial dependence to evaluate robustness of best linear unbiased prediction (BLUP) for phenotypic values	4
Effect of copper and silver ions on sequence and DNA methylation changes in triticale regenerants gained via somatic embryogenesis	4
Genetic variation of Cerastium alpinum L. from Babia Góra, a critically endangered species in Poland	4
The genetic basis of cold tolerance in cucumber (Cucumis sativus L.)—the latest developments and perspectives	3
Discovery of core genes and intercellular communication role in osteosarcoma	3
Genome-wide association study uncovers the genetic loci for yield-related traits in waxy rice	3
Long non-coding RNA variability in porcine skeletal muscle	3
ZNF26-Associated Genes as Prognostic Signatures in Colorectal Cancer with Broad Therapeutic Implications	3
Evaluation of the taxonomic classification tools and visualizers for metagenomic analysis using the Oxford nanopore sequence database	3
Correction to: Featured lncRNA‑based signature for discriminating prognosis and progression of hepatocellular carcinoma	3
Utilization of doubled haploid breeding approach in introgression of QTL/gene(s) for parental line improvement of hybrid rice	3
Different mRNAs encoding identical proteins: how and why?	3
Comparative transcriptome and adaptive evolution analysis on the main liver and attaching liver of Pareuchiloglanis macrotrema	3
Genomic Profiling Reveals Immune-Related Gene Differences in Lung Cancer Patients Stratified by PD1/PDL1 Expression: Implications for Immunotherapy Efficacy	3
Congenital coenzyme Q5-linked pathology: causal genetic association, core phenotype, and molecular mechanism	3
QTL mapping of Fusarium ear rot resistance using genotyping by target sequencing (GBTS) in maize	3
Anthropogenic hybridization and its influence on the adaptive potential of the Sardinian wild boar (Sus scrofa meridionalis)	3
Genome-wide association study of seedling leaf rust resistance in European winter wheat cultivars	3
CALR—mutant myeloproliferative neoplasms: insights from next-generation sequencing	3
Inheritance of physiological and biochemical attributes using numerical and graphical approaches of line × tester in Praecitrullus fistulosus	3
Multiplex PCR assay for the simultaneous identification of race specific and non-specific leaf resistance genes in wheat (Triticum aestivum L.)	3
Exploring microRNA signatures in pediatric non-infectious uveitis: meta-analysis and molecular profiling of patient samples	3
Genetic analysis of autosomal dominant polycystic kidney disease in Iranian families: a combined Sanger and next-generation sequencing study	3
Reconciling the debate on deamination on viral RNA	3
Diversity of genome size, endopolyploidy and SCoT markers in 20 Trigonella (Fabaceae) species	3
Association of the BoLA-DRB3*12:01 allele with resistance to bovine leukosis virus infection in Crioula Lageana cattle	3
Application of OpenArray RT-qPCR for identification of microRNA expression signatures of lower extremity artery disease	3
Genetic variations in NFKB1 signaling molecules: implications for acute lymphoblastic leukemia in Saudi Arabia	3
Gene therapy as an innovative approach to the treatment of hemophilia B—a review	3
Genome-wide identification and expression profiling of the MYC gene family in Triticum monococcum L. subsp. aegilopoides with a focus on the red glume mutant	3
Correction to: The effect of library preparation protocol on the efficiency of heteroplasmy detection in mitochondrial DNA using two massively parallel sequencing Illumina systems	3
Usefulness of alien sterilizing cytoplasms for the hybrid breeding of triticale (xTriticosecale Wittmack): preliminary results	3
Masquerading as lymphoma: the accelerated phase of Chediak–Higashi syndrome and its novel mutation	3
Expanding TBCE-related phenotype—novel variant causing rigid spine, eosinophilia, neutropenia, and nocturnal hypoxemia	3
Experimental evaluation of effectiveness of genomic selection for resistance to northern corn leaf blight in maize	2
Comparative genome analysis of endophytic Bacillus amyloliquefaciens MR4: a potential biocontrol agent isolated from wild medicinal plant root tissue	2
Pharmacogenetic study of CES1 gene and enalapril efficacy	2
Genetic mapping of the Fusarium head blight resistance gene in wheat Guixie 3	2
Correction to: Separating gene clustering in the rare mucopolysaccharidosis disease	2
Genetic and phenotypic parameters for sexual precocity and parasite resistance traits in Nellore cattle	2
Evidence for parent-of-origin effects in autism spectrum disorder: a narrative review	2
Expanding the knowledge about Thauvin-Robinet-Faivre syndrome: a case report with novel clinical findings and review of the literature	2
Screening and investigating the regulatory mechanisms of oxidative stress-related biomarkers in thoracic aortic aneurysms	2
Antibiotic resistance, phylogenetic typing, and virulence genes profile analysis of uropathogenic Escherichia coli isolated from patients in southern Iraq	2
An explanation for the decreased severity of liver malfunction in Niemann-Pick C1 disease with age	2
Transcriptomic analysis of inhibitory effects of isothiazolone antimicrobial agents on Aspergillus amstelodami ZR	2
Transcript level of telomerase reverse-transcriptase (TERT) gene in the rainbow trout (Oncorhynchus mykiss) eggs with different developmental competence for gynogenesis	2
Correction to: The analysis of transcriptomic signature of TNBC—searching for the potential RNA‑based predictive biomarkers to determine the chemotherapy sensitivity	2
Pedigree reconstruction and population structure using SNP markers in Gir cattle	2
Computational analysis of MYC gene variants: structural and functional impact of non-synonymous SNPs	2
Correction to: Identification of significant marker‑trait associations for Fusarium wilt resistance in a genetically diverse core collection of safflower using AFLP and SSR markers	2
Molecular characterization of doublesex and Mab-3 (DMRT) gene family in Ctenopharyngodon idella (grass carp)	2
Somatic and germinal mosaicism of a canonical splicing variant causing limb-girdle muscular dystrophy type 1B	2
Virulence genes, phylogenetic analysis, and antimicrobial resistance of Escherichia coli isolated from urinary tract infection in hospitalized patients and outpatients	2
Transcriptome meta-analysis-based identification of hub transcription factors and RNA-binding proteins potentially orchestrating gene regulatory cascades and crosstalk in response to abiotic stresses	2
Development of a prognostic model for personalized prediction of colon adenocarcinoma (COAD) patient outcomes using methylation-driven genes	2
Unraveling the genetic diversity, population structure, and stability for yield-related traits of rice genotypes in mid-hills of northeastern India	2
HO-CR and HOLL-CR: new forms of winter oilseed rape (Brassica napus L.) with altered fatty acid composition and resistance to selected pathotypes of Plasmodiophora brassicae (clubroot)	2
Prediction ability for growth and maternal traits using SNP arrays based on different marker densities in Nellore cattle using the ssGBLUP	2
Correction to: Genome‑wide post‑transcriptional regulation of bovine mammary gland response to Streptococcus uberis	2
SNP-based high-density linkage map construction and QTL mapping of black spot disease resistance in Chinese sand pear	2
Factors affecting clinical manifestation of chromosomal imbalance in carriers of segmental autosomal mosaicism: differential impact of gender	2
Molecular background of Leber congenital amaurosis in a Polish cohort of patients—novel variants discovered by NGS	2
Novel DNA methylation biomarkers for early diagnosis of oral tongue squamous cell carcinoma (OTSCC)	2
Comparing Bayesian models for the genetic evaluation of oocytes and embryo counts in Dairy Gir cattle	2
Population WGS-based spinal muscular atrophy carrier screening in a cohort of 1076 healthy Polish individuals	2
Establishment of a cloning-free CRISPR/Cas9 protocol to generate large deletions in the bovine MDBK cell line	2

Genome size and gas chromatography-mass spectrometry (GC–MS) analysis of field-grown and in vitro regenerated Pluchea lanceolata plants	2
Identification of significant marker-trait associations for Fusarium wilt resistance in a genetically diverse core collection of safflower using AFLP and SSR markers	2
Genetic implications of PSMA expression variability in breast cancer subtypes with a focus on triple-negative breast cancer	2
Pivotal role of biallelic frequency analysis in identifying copy number alterations using genome-wide methods in tumors with a high level of aneuploidy	2
lncRNA MIAT promotes luminal B breast cancer cell proliferation, migration, and invasion in vitro	2
High amylopectin in waxy maize synergistically affects seed germination and seedling vigour over traditional maize genotypes	2
Complete chloroplast genome sequence of Camellia sinensis: genome structure, adaptive evolution, and phylogenetic relationships	2
The basis of mink susceptibility to SARS-CoV-2 infection	2
Highly diverse phenotypes of mucopolysaccharidosis type IIIB sibling patients: effects of an additional mutation in the AUTS2 gene	2
The forerunners and successful partnerships behind the BioNTech mRNA vaccine	1
SARS-CoV-2 continuously optimizes its codon usage to adapt to human lung environment	1
Characterization of spelt wheat (Triticum spelta L.) genotypes using DArTseq technology	1
In silico approach for the identification of tRNA-derived small non-coding RNAs in SARS-CoV infection	1
Characterization of runs of Homozygosity revealed genomic inbreeding and patterns of selection in indigenous sahiwal cattle	1
Is it possible to select body weight without compromising carcass traits and reproductive efficiency in Caracu cattle?	1
Interfungal antagonism between Trichoderma and Fusarium proliferatum — metabolomic and DNA-based analyses	1
Misdiagnosis in mucopolysaccharidoses	1
Brown trout in Oder estuary tributaries: genetic structure, stocking, and admixture	1
NGS sequencing reveals the cause of hearing loss in a group of Polish patients with an isolated, non-DFNB1 hearing loss	1
Association of polymorphisms of antioxidants (GSTM1/T1) and inflammation-related genes (CXCL8, IL-33, and IL-6) with chronic obstructive pulmonary disease (COPD)	1
DNA methylation dysregulation patterns in the 1p36 region instability	1
Correction to: Combining MTI‑31 with RAD001 inhibits tumor growth and invasion of kidney cancer by activating autophagy	1
DNA sequence features underlying large-scale duplications and deletions in human	1
Genetic analysis of milk minerals in dairy cattle: a review	1
Correction to: Parentage‑based tagging and parentage analyses of stocked sea trout in Vistula River commercial catches	1
Exploring the role of circRNA-miRNA-mRNA interactions in cervical cancer progression: insights into HPV status and potential therapeutic approaches	1
Circulating miRNA as potential biomarkers for diabetes mellitus type 2: should we focus on searching for sex differences?	1
Integrative analysis of homologous recombination repair patterns unveils prognostic signatures and immunotherapeutic insights in breast cancer	1
Investigating the genetic profile of familial atypical cystic fibrosis patients (DeltaF508-CFTR) with neonatal biliary atresia	1
Non-mosaic X monosomy (77,X) in a female dog with signs of virilization	1
Occurrence of mammary gland tumours in male dogs and its weak association with development of testicular tumours: a review	1
Comparative genomic analysis of Stenotrophomonas maltophilia unravels their genetic variations and versatility trait	1
Prognostic biomarker MICAL2 and associates with proliferation, migration and immune infiltration in pancreatic adenocarcinoma	1
Analysis of nutritional composition in opaque2- and crtRB1-based single- and double-biofortified super sweet corn	1
The use of weighted multiple linear regression to estimate QTL × QTL × QTL interaction effects of winter wheat (Triticum aestivum L.) doubled-haploid lines	1
Prevalence of intronic repeat expansions in the RFC1 gene in Polish patients with cerebellar syndrome	1
Reevaluating the total genotype score: a practical perspective from applied sport science	1
Genetic and molecular mechanisms underlying the male sterility in rice	1
QTL analysis of sorghum grain traits based on high-density genetic map	1
Dog–human translational genomics: state of the art and genomic resources	1
Exploring the pathogenic mechanism of RNH1 in colorectal cancer based on eQTL, Multi-omics and deep learning	1
A standardized protocol for genetically stable artificial seed production of Ficus religiosa L. using ISSR fingerprinting	1
High frequency of hotspot mutation in PTPN11 gene among Moroccan patients with Noonan syndrome	1
Functional analysis of HvSNAC1 in stomatal dynamics and drought adaptation	1
HOXA9 versus HOXB9; particular focus on their controversial role in tumor pathogenesis	1
Genome-wide identification and characterization of ABC transporter superfamily in the legume Cajanus cajan	1
Polymorphism of the HMGA2 gene in Polish children and adolescents with short stature and diverse growth hormone secretion	1
Correction to: Unraveling the genetic basis of MODY: insights from next‑generation sequencing	1
Identification of SNP markers associated with yield in winter oilseed rape (Brassica napus L.) hybrids	1
Familial hyponatremia conditioned by the R137C mutation with constitutive activation of the vasopressin receptor	1
Gene therapy strategies in ophthalmology—an overview of current developments and future prospects	1
Genome properties of key oil palm (Elaeis guineensis Jacq.) breeding populations	1
Comparative karyotype analysis of the red brocket deer (M. americana sensu lato and M. rufa) complex: evidence of drastic chromosomal evolution and implications on speciation process	1
Cannabidiol (CBD) modulates the transcriptional profile of ethanol-exposed human dermal fibroblast cells	1
Genome-wide post-transcriptional regulation of bovine mammary gland response to Streptococcus uberis	1
Development of a novel gene expression panel for the characterization of MSCs for increased biological safety	1
In silico and in vitro analysis of the impact of single substitutions within EXO-motifs on Hsa-MiR-1246 intercellular transfer in breast cancer cell	1
Modern therapies of nonsmall cell lung cancer	1
Molecular complexity of diffuse large B-cell lymphoma: a molecular perspective and therapeutic implications	1
Total impact of oxidative stress genes on cardiovascular events—a 7-year follow-up study	1
Integrating ferroptosis-related genes (FRGs) and prognostic models to enhance UCEC outcome prediction and therapeutic insights	1
Gene-edited cells: novel allogeneic gene/cell therapy for epidermolysis bullosa	1
Hfq influences ciprofloxacin accumulation in Escherichia coli independently of ompC and ompF post-transcriptional regulation	1