Journal of Applied Genetics

Article	Citations
Genetic diversity and population structure of Uganda cassava germplasm	29
Experimental and in silico analysis of LINC01279 expression in tumor of patients with breast cancer	23
Genetic analysis of novel resistance sources and genome-wide association mapping identified novel QTLs for resistance to Zymoseptoria tritici, the causal agent of septoria tritici blotch in wheat	21
A simple and unified protocol to purify all seven Escherichia coli RNA polymerase sigma factors	21
The molecular puzzle of autoinflammatory skin diseases—a review of chosen conditions	20
Antibiotic resistance and its correlation with biofilm formation and virulence genes in Klebsiella pneumoniae isolated from wounds	18
Complementarity of biomarker screening and genetic analyses based on the case of an attenuated multiple sulfatase deficiency	17
Genetic diversity and selection signatures in sheep breeds	16
Circular RNA circ_0000119 promotes cervical cancer cell growth and migration via miR-433-3p/PAK2 axis	15
In search of the relationship between the rye polyamine oxidase (PAO) gene and resistance to powdery mildew (PM)	15
Genetic and genomic characterization followed by single-step genomic evaluation of withers height in German Warmblood horses	15
Strigolactone insensitivity affects differential shoot and root transcriptome in barley	13
Spinocerebellar ataxia 27B (SCA27B)—a systematic review and a case report of a Polish family	13
Telomere length variation does not correspond with the growth disturbances in the rainbow trout (Oncorhynchus mykiss)	13
Multi-trait stability index in the selection of high-yielding and stable barley genotypes	12
Genome-wide identification of genetic determinants for gall midge resistance in rice using genic markers	12
Commentary on “Poor evidence for host-dependent regular RNA editing in the transcriptome of SARS-CoV-2”	12
MicroRNA in lung cancer—a novel potential way for early diagnosis and therapy	12
Mutations within gene XNR_2147 for TetR-like protein enhance lincomycin resistance and endogenous specialized metabolism of Streptomyces albus J1074	12
High expression of ACKR1 predicts a good prognosis and suppresses sarcoma cell progression via regulating the tumor immune microenvironment	12
An updated molecular toolkit for genomics-assisted breeding of waxy sorghum [Sorghum bicolor (L.) Moench]	12
Correction to: Diallel analysis of common bean (Phaseolus vulgaris L.) genotypes for seed dietary fibre, carbohydrate, calcium and phosphorus contents	12
Uncovering the role of aquaporin and chromobox family members as potential biomarkers in head and neck squamous cell carcinoma via integrative multiomics and in silico approach	12
Field response and molecular screening of European wheat germplasm against powdery mildew at the Himalayan region of Pakistan	12
Genetic analysis of common bean (Phaseolus vulgaris L.) genotypes for root traits, yield components and seed yield	11

Structure and functions of a multireplicon genome of Antarctic Psychrobacter sp. ANT_H3: characterization of the genetic modules suitable for the construction of the plasmid-vectors for cold-active ba	11
Polymorphic insertions of DcSto miniature inverted-repeat transposable elements reveal genetic diversity structure within the cultivated carrot	11
Carfilzomib resistance in multiple myeloma: A comparative metabolomic analysis	11
Heritability of chronic thermal tolerance and genetic correlations with growth traits in the Pacific oyster (Crassostrea gigas)	10
Identification of novel biallelic mutations in CFAP53 associated with fetal situs inversus totalis and literature review	10
Deciphering early responsive signature genes in rice blast disease: an integrated temporal transcriptomic study	9
QTL mapping for adult plant resistance to wheat stripe rust in M96-5 × Guixie 3 wheat population	9
Bioherbicidal potential of Bacillus altitudinis D30202 on Avena fatua L.: a whole-genome sequencing analysis	9
Up-regulated mRNA expression of VEGFA receptors (FLT1 and KDR) in placentas after assisted reproductive technology fertilization	8
Identifying key genes and functionally enriched pathways in acute myeloid leukemia by weighted gene co-expression network analysis	8
Bioinformatics screening of prognostic immune-related genes in renal clear cell carcinoma	8
Identification of trait-associated microRNA modules in liver transcriptome of pig fed with PUFAs-enriched supplementary diet	8
Endophytic fungal communities of Calicotome spinosa—an important medicinal plant of Tizi-Ouzou (Algeria)	7
Association of ACE and AGTR1 variants with retinopathy of prematurity: a case–control study and meta-analysis	7
Identification of potential biomarkers for melanoma cancer (black tumor) using bioinformatics strategy: a study based on GEO and SRA datasets	7
TGFα-EGFR pathway in breast carcinogenesis, association with WWOX expression and estrogen activation	7
MiR-1976 affects lung squamous cell carcinoma development by targeting NCAPH	7
Oat species and interspecific amphiploids show predominance of diploid nuclei in the syncytial endosperm	7
Genetic analysis of purple pigmentation in rice seed and vegetative parts — implications on developing high-yielding purple rice (Oryza sativa L.)	7
Correction to: Complete chloroplast genome sequence of Camellia sinensis: genome structure, adaptive evolution, and phylogenetic relationships	7
Elucidating the transcriptomic response of adult-derived mHypoA-2/12 mouse hypothalamic neuron cell line to cannabidiol (CBD) exposure	7
Exploring genomic inbreeding and selection signatures in a commercial Brangus herd through functional annotation	6
Are head and neck versus abdominal paragangliomas driven by different single nucleotide events?	6
Variants of the CASP9 gene as candidate markers for primary response to anti-TNF therapy in Crohn’s disease patients	6
What, how, and why? – anti-EHEC phages and their application potential in medicine and food industry	6
From cytogenetics to cytogenomics: a new era in the diagnosis of chromosomal abnormalities in domestic animals	6
Rare T-box variants in adult pulmonary arterial hypertension with congenital heart disease	6
Comprehensive bioinformatics analysis reveals the oncogenic role of FoxM1 and its impact on prognosis, immune microenvironment, and drug sensitivity in osteosarcoma	6
MicroRNA bioinformatics in precision oncology: an integrated pipeline from NGS to AI-based target discovery	6
Cellular and molecular changes in mucopolysaccharidosis-plus syndrome caused by a homozygous c.599G > C (p.Arg200Pro) variant of the VPS33A gene	5
Oligogenic risk score for Gilles de la Tourette syndrome reveals a genetic continuum of tic disorders	5
Giardia fibrillarin: a bioinformatics exploration of sequence and structure	5
Investigation of the biofilm formation in extra-intestinal pathogenic Escherichia coli ST131 strains and its correlation with the presence of fimH, afa, and kpsMSTII genes	5
Identification of a migracytosis and angiogenesis-associated lncRNAs signature in immunotherapy in breast cancer	5
Identification of subtropical breeding lines for ideal plant architecture in maize through multiple selection indices	5
GGE biplot analysis for cane yield and sugar yield in advanced clones of sugarcane (Saccharum sp. complex)	5
NADPH oxidase 4-mediating oxidative stress contributes to endometriosis	5
Haplotypes affecting stillbirth and fertility in Icelandic Dairy Cattle	5
Blood-based microRNA profiling unveils complex molecular dynamics in breast cancer	5
Novel FOXP2 variant associated with speech and language dysfunction in a Chinese family and literature review	5
Single-cell integrated transcriptomics reveals the role of keratinocytes in head and neck squamous cell carcinoma	5
Separating gene clustering in the rare mucopolysaccharidosis disease	5
The mitogenomes characterization of two Peltigera species (Peltigera elisabethae and Peltigera polydactylon) and comparative mitogenomic analyses of six Peltigera	4
Transcriptome profiling and metabolic pathway analysis towards reliable biomarker discovery in early-stage lung cancer	4
Application of a custom NGS gene panel revealed a high diagnostic utility for molecular testing of hereditary ataxias	4
DNA ligase IV mutations confer shorter lifespan and increased sensitivity to nutrient stress in Drosophila melanogaster	4
Urofacial (Ochoa) syndrome with a founder pathogenic variant in the HPSE2 gene: a case report and mutation origin	4
RNA-Seq transcriptome profiling of Nile rat livers reveals novel insights on the anti-diabetic mechanisms of Water-Soluble Palm Fruit Extract	4
Using machine learning and partial dependence to evaluate robustness of best linear unbiased prediction (BLUP) for phenotypic values	4
Genetic variation of Cerastium alpinum L. from Babia Góra, a critically endangered species in Poland	4

Strigolactones modulate jasmonate-dependent transcriptional reprogramming during wound signalling in Arabidopsis	4
Development of novel gene-based markers for waxy1 gene and their validation for exploitation in molecular breeding for enhancement of amylopectin in maize	4
Bioinformatics to analyze the differentially expressed genes in different degrees of Alzheimer’s disease and their roles in progress of the disease	4
Integration of genome-wide association studies reveal loci associated with salt tolerance score of rice at the seedling stage	4
Genome-wide identification and characterization of glutathione S-transferase gene family in Musa acuminata L. AAA group and gaining an insight to their role in banana fruit development	4
Identification of eQTLs and differential gene expression associated with fetal programming in beef cattle	4
Integrative multiomics and weighted network approach reveals the prognostic role of RPS7 in lung squamous cell carcinoma pathogenesis	4
Identification of Laportea bulbifera using the complete chloroplast genome as a potentially effective super-barcode	4
The effect of library preparation protocol on the efficiency of heteroplasmy detection in mitochondrial DNA using two massively parallel sequencing Illumina systems	4
Identification of quantitative trait loci for in vitro plant regeneration from leaf microexplants in cucumber (Cucumis sativus L.)	4
Review of applications of artificial intelligence (AI) methods in crop research	4
Epidemiology of Streptococcus pyogenes upper respiratory tract infections in Poland (2003–2017)	4
QTL mapping of Fusarium ear rot resistance using genotyping by target sequencing (GBTS) in maize	4
Discovery of genomic regions associated with resistance to late wilt disease caused by Harpophora maydis (Samra, Sabet and Hing) in maize (Zea mays L.)	4
Effect of copper and silver ions on sequence and DNA methylation changes in triticale regenerants gained via somatic embryogenesis	4
Long non-coding RNA variability in porcine skeletal muscle	3
Different mRNAs encoding identical proteins: how and why?	3
Usefulness of alien sterilizing cytoplasms for the hybrid breeding of triticale (xTriticosecale Wittmack): preliminary results	3
Discovery of core genes and intercellular communication role in osteosarcoma	3
Congenital coenzyme Q5-linked pathology: causal genetic association, core phenotype, and molecular mechanism	3
Correction to: Unjustly forgotten scientist Wacław Mayzel (1847–1916)—co‑discoverer of somatic mitosis	3
Expanding TBCE-related phenotype—novel variant causing rigid spine, eosinophilia, neutropenia, and nocturnal hypoxemia	3
Comparative transcriptome and adaptive evolution analysis on the main liver and attaching liver of Pareuchiloglanis macrotrema	3
ZNF26-Associated Genes as Prognostic Signatures in Colorectal Cancer with Broad Therapeutic Implications	3
Masquerading as lymphoma: the accelerated phase of Chediak–Higashi syndrome and its novel mutation	3
Molecular background of Leber congenital amaurosis in a Polish cohort of patients—novel variants discovered by NGS	3
Genomic Profiling Reveals Immune-Related Gene Differences in Lung Cancer Patients Stratified by PD1/PDL1 Expression: Implications for Immunotherapy Efficacy	3
Application of OpenArray RT-qPCR for identification of microRNA expression signatures of lower extremity artery disease	3
Genome-wide association study uncovers the genetic loci for yield-related traits in waxy rice	3
Correction to: Telomere length variation does not correspond with the growth disturbances in the rainbow trout (Oncorhynchus mykiss)	3
FGFR3 and FGFR4 overexpression in juvenile nasopharyngeal angiofibroma: impact of smoking history and implications for personalized management	3
Anthropogenic hybridization and its influence on the adaptive potential of the Sardinian wild boar (Sus scrofa meridionalis)	3
Gene therapy as an innovative approach to the treatment of hemophilia B—a review	3
Exploring microRNA signatures in pediatric non-infectious uveitis: meta-analysis and molecular profiling of patient samples	3
Reconciling the debate on deamination on viral RNA	3
The genetic basis of cold tolerance in cucumber (Cucumis sativus L.)—the latest developments and perspectives	3
Genome-wide association study of seedling leaf rust resistance in European winter wheat cultivars	3
Association of the BoLA-DRB3*12:01 allele with resistance to bovine leukosis virus infection in Crioula Lageana cattle	3
Diversity of genome size, endopolyploidy and SCoT markers in 20 Trigonella (Fabaceae) species	3
Utilization of doubled haploid breeding approach in introgression of QTL/gene(s) for parental line improvement of hybrid rice	3
Development of a prognostic model for personalized prediction of colon adenocarcinoma (COAD) patient outcomes using methylation-driven genes	2
Pivotal role of biallelic frequency analysis in identifying copy number alterations using genome-wide methods in tumors with a high level of aneuploidy	2
Transcriptomic analysis of inhibitory effects of isothiazolone antimicrobial agents on Aspergillus amstelodami ZR	2
SNP-based high-density linkage map construction and QTL mapping of black spot disease resistance in Chinese sand pear	2
Comparative genome analysis of endophytic Bacillus amyloliquefaciens MR4: a potential biocontrol agent isolated from wild medicinal plant root tissue	2
Correction to: The analysis of transcriptomic signature of TNBC—searching for the potential RNA‑based predictive biomarkers to determine the chemotherapy sensitivity	2
Genetic implications of PSMA expression variability in breast cancer subtypes with a focus on triple-negative breast cancer	2
Experimental evaluation of effectiveness of genomic selection for resistance to northern corn leaf blight in maize	2
Correction to: Genome‑wide post‑transcriptional regulation of bovine mammary gland response to Streptococcus uberis	2
Inheritance of physiological and biochemical attributes using numerical and graphical approaches of line × tester in Praecitrullus fistulosus	2
Evaluation of the taxonomic classification tools and visualizers for metagenomic analysis using the Oxford nanopore sequence database	2
Genetic analysis of autosomal dominant polycystic kidney disease in Iranian families: a combined Sanger and next-generation sequencing study	2
An explanation for the decreased severity of liver malfunction in Niemann-Pick C1 disease with age	2
The basis of mink susceptibility to SARS-CoV-2 infection	2
Transcriptome meta-analysis-based identification of hub transcription factors and RNA-binding proteins potentially orchestrating gene regulatory cascades and crosstalk in response to abiotic stresses	2
Pharmacogenetic study of CES1 gene and enalapril efficacy	2
Computational analysis of MYC gene variants: structural and functional impact of non-synonymous SNPs	2
Antibiotic resistance, phylogenetic typing, and virulence genes profile analysis of uropathogenic Escherichia coli isolated from patients in southern Iraq	2
Factors affecting clinical manifestation of chromosomal imbalance in carriers of segmental autosomal mosaicism: differential impact of gender	2
Molecular characterization of doublesex and Mab-3 (DMRT) gene family in Ctenopharyngodon idella (grass carp)	2
Transcript level of telomerase reverse-transcriptase (TERT) gene in the rainbow trout (Oncorhynchus mykiss) eggs with different developmental competence for gynogenesis	2
Screening and investigating the regulatory mechanisms of oxidative stress-related biomarkers in thoracic aortic aneurysms	2
Prediction ability for growth and maternal traits using SNP arrays based on different marker densities in Nellore cattle using the ssGBLUP	2
Genome-wide identification and expression profiling of the MYC gene family in Triticum monococcum L. subsp. aegilopoides with a focus on the red glume mutant	2
Correction to: The effect of library preparation protocol on the efficiency of heteroplasmy detection in mitochondrial DNA using two massively parallel sequencing Illumina systems	2
Novel DNA methylation biomarkers for early diagnosis of oral tongue squamous cell carcinoma (OTSCC)	2
Genetic testing—whether to allow complete freedom? Direct to consumer tests versus genetic tests for medical purposes	2
Virulence genes, phylogenetic analysis, and antimicrobial resistance of Escherichia coli isolated from urinary tract infection in hospitalized patients and outpatients	2
High amylopectin in waxy maize synergistically affects seed germination and seedling vigour over traditional maize genotypes	2
HO-CR and HOLL-CR: new forms of winter oilseed rape (Brassica napus L.) with altered fatty acid composition and resistance to selected pathotypes of Plasmodiophora brassicae (clubroot)	2
Complete chloroplast genome sequence of Camellia sinensis: genome structure, adaptive evolution, and phylogenetic relationships	2
Correction to: Identification of significant marker‑trait associations for Fusarium wilt resistance in a genetically diverse core collection of safflower using AFLP and SSR markers	2
Highly diverse phenotypes of mucopolysaccharidosis type IIIB sibling patients: effects of an additional mutation in the AUTS2 gene	2
Genome size and gas chromatography-mass spectrometry (GC–MS) analysis of field-grown and in vitro regenerated Pluchea lanceolata plants	2
Evidence for parent-of-origin effects in autism spectrum disorder: a narrative review	2
Unraveling the genetic diversity, population structure, and stability for yield-related traits of rice genotypes in mid-hills of northeastern India	2
Pedigree reconstruction and population structure using SNP markers in Gir cattle	2
Multiplex PCR assay for the simultaneous identification of race specific and non-specific leaf resistance genes in wheat (Triticum aestivum L.)	2
Correction to: Featured lncRNA‑based signature for discriminating prognosis and progression of hepatocellular carcinoma	2
CALR—mutant myeloproliferative neoplasms: insights from next-generation sequencing	2

lncRNA MIAT promotes luminal B breast cancer cell proliferation, migration, and invasion in vitro	2
DNA sequence features underlying large-scale duplications and deletions in human	1
SARS-CoV-2 continuously optimizes its codon usage to adapt to human lung environment	1
Correction to: Combining MTI‑31 with RAD001 inhibits tumor growth and invasion of kidney cancer by activating autophagy	1
QTL analysis of sorghum grain traits based on high-density genetic map	1
A standardized protocol for genetically stable artificial seed production of Ficus religiosa L. using ISSR fingerprinting	1
Genetic mapping of the Fusarium head blight resistance gene in wheat Guixie 3	1
High frequency of hotspot mutation in PTPN11 gene among Moroccan patients with Noonan syndrome	1
Hfq influences ciprofloxacin accumulation in Escherichia coli independently of ompC and ompF post-transcriptional regulation	1
Functional analysis of HvSNAC1 in stomatal dynamics and drought adaptation	1
Establishment of a cloning-free CRISPR/Cas9 protocol to generate large deletions in the bovine MDBK cell line	1
Misdiagnosis in mucopolysaccharidoses	1
Somatic and germinal mosaicism of a canonical splicing variant causing limb-girdle muscular dystrophy type 1B	1
Comparing Bayesian models for the genetic evaluation of oocytes and embryo counts in Dairy Gir cattle	1
Non-mosaic X monosomy (77,X) in a female dog with signs of virilization	1
Genetic and phenotypic parameters for sexual precocity and parasite resistance traits in Nellore cattle	1
In silico and in vitro analysis of the impact of single substitutions within EXO-motifs on Hsa-MiR-1246 intercellular transfer in breast cancer cell	1
Genetic analysis of milk minerals in dairy cattle: a review	1
Prevalence of intronic repeat expansions in the RFC1 gene in Polish patients with cerebellar syndrome	1
Molecular complexity of diffuse large B-cell lymphoma: a molecular perspective and therapeutic implications	1
DNA methylation dysregulation patterns in the 1p36 region instability	1
In silico approach for the identification of tRNA-derived small non-coding RNAs in SARS-CoV infection	1
Modern therapies of nonsmall cell lung cancer	1
The forerunners and successful partnerships behind the BioNTech mRNA vaccine	1
Correction to: Parentage‑based tagging and parentage analyses of stocked sea trout in Vistula River commercial catches	1
Exploring the role of circRNA-miRNA-mRNA interactions in cervical cancer progression: insights into HPV status and potential therapeutic approaches	1
Comparative karyotype analysis of the red brocket deer (M. americana sensu lato and M. rufa) complex: evidence of drastic chromosomal evolution and implications on speciation process	1
Dog–human translational genomics: state of the art and genomic resources	1
Correction to: Separating gene clustering in the rare mucopolysaccharidosis disease	1
Occurrence of mammary gland tumours in male dogs and its weak association with development of testicular tumours: a review	1
HOXA9 versus HOXB9; particular focus on their controversial role in tumor pathogenesis	1
Identification of significant marker-trait associations for Fusarium wilt resistance in a genetically diverse core collection of safflower using AFLP and SSR markers	1
Genome properties of key oil palm (Elaeis guineensis Jacq.) breeding populations	1
Investigating the genetic profile of familial atypical cystic fibrosis patients (DeltaF508-CFTR) with neonatal biliary atresia	1
Prognostic biomarker MICAL2 and associates with proliferation, migration and immune infiltration in pancreatic adenocarcinoma	1
Gene-edited cells: novel allogeneic gene/cell therapy for epidermolysis bullosa	1
Development of a novel gene expression panel for the characterization of MSCs for increased biological safety	1
Reevaluating the total genotype score: a practical perspective from applied sport science	1
Brown trout in Oder estuary tributaries: genetic structure, stocking, and admixture	1
Is it possible to select body weight without compromising carcass traits and reproductive efficiency in Caracu cattle?	1
Integrating ferroptosis-related genes (FRGs) and prognostic models to enhance UCEC outcome prediction and therapeutic insights	1
Total impact of oxidative stress genes on cardiovascular events—a 7-year follow-up study	1
Population WGS-based spinal muscular atrophy carrier screening in a cohort of 1076 healthy Polish individuals	1
Circulating miRNA as potential biomarkers for diabetes mellitus type 2: should we focus on searching for sex differences?	1
The use of weighted multiple linear regression to estimate QTL × QTL × QTL interaction effects of winter wheat (Triticum aestivum L.) doubled-haploid lines	1
Expanding the knowledge about Thauvin-Robinet-Faivre syndrome: a case report with novel clinical findings and review of the literature	1
Genome-wide post-transcriptional regulation of bovine mammary gland response to Streptococcus uberis	1
Integrative analysis of homologous recombination repair patterns unveils prognostic signatures and immunotherapeutic insights in breast cancer	1
Analytical and numerical comparisons of two methods of estimation of additive × additive × additive interaction of QTL effects	1
Genetic and molecular mechanisms underlying the male sterility in rice	1
Genome-wide identification and characterization of ABC transporter superfamily in the legume Cajanus cajan	1
Correction to: Unraveling the genetic basis of MODY: insights from next‑generation sequencing	1