OOIR: Observatory of International Research

Papers

(The TQCC of Journal of Applied Genetics is 3. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-08-01 to 2025-08-01.)

Article	Citations
Antibiotic resistance and its correlation with biofilm formation and virulence genes in Klebsiella pneumoniae isolated from wounds	27
A simple and unified protocol to purify all seven Escherichia coli RNA polymerase sigma factors	23
Experimental and in silico analysis of LINC01279 expression in tumor of patients with breast cancer	19
Genetic diversity and population structure of Uganda cassava germplasm	18
In search of the relationship between the rye polyamine oxidase (PAO) gene and resistance to powdery mildew (PM)	17
Genetic diversity and selection signatures in sheep breeds	16
Complementarity of biomarker screening and genetic analyses based on the case of an attenuated multiple sulfatase deficiency	16
Spinocerebellar ataxia 27B (SCA27B)—a systematic review and a case report of a Polish family	15
Genetic analysis of novel resistance sources and genome-wide association mapping identified novel QTLs for resistance to Zymoseptoria tritici, the causal agent of septoria tritici blotch in wheat	15
Circular RNA circ_0000119 promotes cervical cancer cell growth and migration via miR-433-3p/PAK2 axis	14
Strigolactone insensitivity affects differential shoot and root transcriptome in barley	14
Commentary on “Poor evidence for host-dependent regular RNA editing in the transcriptome of SARS-CoV-2”	13
Mutations within gene XNR_2147 for TetR-like protein enhance lincomycin resistance and endogenous specialized metabolism of Streptomyces albus J1074	13
Genetic and genomic characterization followed by single-step genomic evaluation of withers height in German Warmblood horses	13
Telomere length variation does not correspond with the growth disturbances in the rainbow trout (Oncorhynchus mykiss)	12
High expression of ACKR1 predicts a good prognosis and suppresses sarcoma cell progression via regulating the tumor immune microenvironment	12
Uncovering the role of aquaporin and chromobox family members as potential biomarkers in head and neck squamous cell carcinoma via integrative multiomics and in silico approach	12
Genome-wide identification of genetic determinants for gall midge resistance in rice using genic markers	12
Bioherbicidal potential of Bacillus altitudinis D30202 on Avena fatua L.: a whole-genome sequencing analysis	11
Deciphering early responsive signature genes in rice blast disease: an integrated temporal transcriptomic study	11
Field response and molecular screening of European wheat germplasm against powdery mildew at the Himalayan region of Pakistan	11
Identification of novel biallelic mutations in CFAP53 associated with fetal situs inversus totalis and literature review	11
MicroRNA in lung cancer—a novel potential way for early diagnosis and therapy	11
Structure and functions of a multireplicon genome of Antarctic Psychrobacter sp. ANT_H3: characterization of the genetic modules suitable for the construction of the plasmid-vectors for cold-active ba	11
Correction to: Diallel analysis of common bean (Phaseolus vulgaris L.) genotypes for seed dietary fibre, carbohydrate, calcium and phosphorus contents	11

Polymorphic insertions of DcSto miniature inverted-repeat transposable elements reveal genetic diversity structure within the cultivated carrot	10
Heritability of chronic thermal tolerance and genetic correlations with growth traits in the Pacific oyster (Crassostrea gigas)	10
Identifying key genes and functionally enriched pathways in acute myeloid leukemia by weighted gene co-expression network analysis	10
QTL mapping for adult plant resistance to wheat stripe rust in M96-5 × Guixie 3 wheat population	10
Association of ACE and AGTR1 variants with retinopathy of prematurity: a case–control study and meta-analysis	10
Elucidating the transcriptomic response of adult-derived mHypoA-2/12 mouse hypothalamic neuron cell line to cannabidiol (CBD) exposure	9
Identification of trait-associated microRNA modules in liver transcriptome of pig fed with PUFAs-enriched supplementary diet	9
Correction to: Complete chloroplast genome sequence of Camellia sinensis: genome structure, adaptive evolution, and phylogenetic relationships	9
Bioinformatics screening of prognostic immune-related genes in renal clear cell carcinoma	9
TGFα-EGFR pathway in breast carcinogenesis, association with WWOX expression and estrogen activation	8
Genetic analysis of purple pigmentation in rice seed and vegetative parts — implications on developing high-yielding purple rice (Oryza sativa L.)	8
Up-regulated mRNA expression of VEGFA receptors (FLT1 and KDR) in placentas after assisted reproductive technology fertilization	8
Endophytic fungal communities of Calicotome spinosa—an important medicinal plant of Tizi-Ouzou (Algeria)	8
Rare T-box variants in adult pulmonary arterial hypertension with congenital heart disease	7
NADPH oxidase 4-mediating oxidative stress contributes to endometriosis	7
Oat species and interspecific amphiploids show predominance of diploid nuclei in the syncytial endosperm	7
Identification of potential biomarkers for melanoma cancer (black tumor) using bioinformatics strategy: a study based on GEO and SRA datasets	7
From cytogenetics to cytogenomics: a new era in the diagnosis of chromosomal abnormalities in domestic animals	7
Variants of the CASP9 gene as candidate markers for primary response to anti-TNF therapy in Crohn’s disease patients	7
Detection of candidate gene networks involved in resistance to Sclerotinia sclerotiorum in soybean	7
MiR-1976 affects lung squamous cell carcinoma development by targeting NCAPH	7
Investigation of the biofilm formation in extra-intestinal pathogenic Escherichia coli ST131 strains and its correlation with the presence of fimH, afa, and kpsMSTII genes	6
What, how, and why? – anti-EHEC phages and their application potential in medicine and food industry	6
Single-cell integrated transcriptomics reveals the role of keratinocytes in head and neck squamous cell carcinoma	6
Exploring genomic inbreeding and selection signatures in a commercial Brangus herd through functional annotation	6
Identification of a migracytosis and angiogenesis-associated lncRNAs signature in immunotherapy in breast cancer	6
Separating gene clustering in the rare mucopolysaccharidosis disease	6
Are head and neck versus abdominal paragangliomas driven by different single nucleotide events?	6
Comprehensive bioinformatics analysis reveals the oncogenic role of FoxM1 and its impact on prognosis, immune microenvironment, and drug sensitivity in osteosarcoma	6
Haplotypes affecting stillbirth and fertility in Icelandic Dairy Cattle	6
Blood-based microRNA profiling unveils complex molecular dynamics in breast cancer	5
Application of a custom NGS gene panel revealed a high diagnostic utility for molecular testing of hereditary ataxias	5
Bioinformatics to analyze the differentially expressed genes in different degrees of Alzheimer’s disease and their roles in progress of the disease	5
DNA ligase IV mutations confer shorter lifespan and increased sensitivity to nutrient stress in Drosophila melanogaster	5
Identification of quantitative trait loci for in vitro plant regeneration from leaf microexplants in cucumber (Cucumis sativus L.)	5
GGE biplot analysis for cane yield and sugar yield in advanced clones of sugarcane (Saccharum sp. complex)	5
Identification of subtropical breeding lines for ideal plant architecture in maize through multiple selection indices	5
Giardia fibrillarin: a bioinformatics exploration of sequence and structure	5
Oligogenic risk score for Gilles de la Tourette syndrome reveals a genetic continuum of tic disorders	5
Novel FOXP2 variant associated with speech and language dysfunction in a Chinese family and literature review	5
Transcriptome profiling and metabolic pathway analysis towards reliable biomarker discovery in early-stage lung cancer	4
Epidemiology of Streptococcus pyogenes upper respiratory tract infections in Poland (2003–2017)	4
Application of OpenArray RT-qPCR for identification of microRNA expression signatures of lower extremity artery disease	4
Using machine learning and partial dependence to evaluate robustness of best linear unbiased prediction (BLUP) for phenotypic values	4
Effect of copper and silver ions on sequence and DNA methylation changes in triticale regenerants gained via somatic embryogenesis	4
Development of novel gene-based markers for waxy1 gene and their validation for exploitation in molecular breeding for enhancement of amylopectin in maize	4
Genetic variation of Cerastium alpinum L. from Babia Góra, a critically endangered species in Poland	4
Identification of Laportea bulbifera using the complete chloroplast genome as a potentially effective super-barcode	4
Review of applications of artificial intelligence (AI) methods in crop research	4
Identification of eQTLs and differential gene expression associated with fetal programming in beef cattle	4

Discovery of genomic regions associated with resistance to late wilt disease caused by Harpophora maydis (Samra, Sabet and Hing) in maize (Zea mays L.)	4
The effect of library preparation protocol on the efficiency of heteroplasmy detection in mitochondrial DNA using two massively parallel sequencing Illumina systems	4
Integrative multiomics and weighted network approach reveals the prognostic role of RPS7 in lung squamous cell carcinoma pathogenesis	4
Genome-wide identification and characterization of glutathione S-transferase gene family in Musa acuminata L. AAA group and gaining an insight to their role in banana fruit development	4
Integration of genome-wide association studies reveal loci associated with salt tolerance score of rice at the seedling stage	4
RNA-Seq transcriptome profiling of Nile rat livers reveals novel insights on the anti-diabetic mechanisms of Water-Soluble Palm Fruit Extract	4
Urofacial (Ochoa) syndrome with a founder pathogenic variant in the HPSE2 gene: a case report and mutation origin	4
The mitogenomes characterization of two Peltigera species (Peltigera elisabethae and Peltigera polydactylon) and comparative mitogenomic analyses of six Peltigera	4
Molecular background of Leber congenital amaurosis in a Polish cohort of patients—novel variants discovered by NGS	3
Comparative transcriptome and adaptive evolution analysis on the main liver and attaching liver of Pareuchiloglanis macrotrema	3
Discovery of core genes and intercellular communication role in osteosarcoma	3
Diversity of genome size, endopolyploidy and SCoT markers in 20 Trigonella (Fabaceae) species	3
Expanding TBCE-related phenotype—novel variant causing rigid spine, eosinophilia, neutropenia, and nocturnal hypoxemia	3
Genome-wide association study of seedling leaf rust resistance in European winter wheat cultivars	3
Reconciling the debate on deamination on viral RNA	3
CALR—mutant myeloproliferative neoplasms: insights from next-generation sequencing	3
Correction to: The effect of library preparation protocol on the efficiency of heteroplasmy detection in mitochondrial DNA using two massively parallel sequencing Illumina systems	3
Exploring microRNA signatures in pediatric non-infectious uveitis: meta-analysis and molecular profiling of patient samples	3
ZNF26-Associated Genes as Prognostic Signatures in Colorectal Cancer with Broad Therapeutic Implications	3
Correction to: Unjustly forgotten scientist Wacław Mayzel (1847–1916)—co‑discoverer of somatic mitosis	3
Utilization of doubled haploid breeding approach in introgression of QTL/gene(s) for parental line improvement of hybrid rice	3
QTL mapping of Fusarium ear rot resistance using genotyping by target sequencing (GBTS) in maize	3
Gene therapy as an innovative approach to the treatment of hemophilia B—a review	3
Genomic Profiling Reveals Immune-Related Gene Differences in Lung Cancer Patients Stratified by PD1/PDL1 Expression: Implications for Immunotherapy Efficacy	3
Correction to: Telomere length variation does not correspond with the growth disturbances in the rainbow trout (Oncorhynchus mykiss)	3
Genetic analysis of autosomal dominant polycystic kidney disease in Iranian families: a combined Sanger and next-generation sequencing study	3
Correction to: Featured lncRNA‑based signature for discriminating prognosis and progression of hepatocellular carcinoma	3
Anthropogenic hybridization and its influence on the adaptive potential of the Sardinian wild boar (Sus scrofa meridionalis)	3
The genetic basis of cold tolerance in cucumber (Cucumis sativus L.)—the latest developments and perspectives	3
FGFR3 and FGFR4 overexpression in juvenile nasopharyngeal angiofibroma: impact of smoking history and implications for personalized management	3
Different mRNAs encoding identical proteins: how and why?	3
Long non-coding RNA variability in porcine skeletal muscle	3
Masquerading as lymphoma: the accelerated phase of Chediak–Higashi syndrome and its novel mutation	3
Congenital coenzyme Q5-linked pathology: causal genetic association, core phenotype, and molecular mechanism	3
Evaluation of the taxonomic classification tools and visualizers for metagenomic analysis using the Oxford nanopore sequence database	3