OOIR: Observatory of International Research

Papers

(The median citation count of DNA Research is 3. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2022-01-01 to 2026-01-01.)

Article	Citations
Chromosome-level genome assembly of the medicinal insect Blaps rhynchopetera using Nanopore and Hi-C technologies	58
Chromosomal-level genome assembly of the orchid tree Bauhinia variegata (Leguminosae; Cercidoideae) supports the allotetraploid origin hypothesis of Bauhinia	41
Near-complete telomere-to-telomere de novo genome assembly in Egyptian clover (Trifolium alexandrinum)	33
Comparative genomics of native plasmids from plant pathogenic Gammaproteobacteria	32
A chromosome-level genome assembly of the pollinating fig wasp Valisia javana	27
Thin-diaPASEF: diaPASEF for maximizing proteome coverage in single-shot proteomics	23
Functional landscape of genome-wide postzygotic somatic mutations between monozygotic twins	21
The haplotype-phased genome assembly facilitated the deciphering of the bud dormancy-related QTLs in Prunus mume	20
A haplotype-resolved reference genome of a long-distance migratory bat, Pipistrellus nathusii (Keyserling & Blasius, 1839)	20
Hybrid genome assembly of the widespread bat Rhinolophus lepidus provides insights into susceptibility to SARS-CoV-2 infection and climate change threat	20
Characterization of transcriptome changes in saline stress adaptation on Leuciscus merzbacheri using PacBio Iso-Seq and RNA-Seq	20
Genome assembly of the pioneer speciesPlantago majorL. (Plantaginaceae) provides insight into its global distribution and adaptation to metal-contaminated soil	19
Genome assembly of Genji firefly (Nipponoluciola cruciata) reveals novel luciferase-like luminescent proteins without peroxisome targeting signal	19
Hybrid de novo genome assembly of the sexually dimorphic Lady Amherst’s pheasant	18
Improved assembly and annotation of the sesame genome	17
Chromosome-level genome assembly and annotation of the black sea urchin Arbacia lixula (Linnaeus, 1758)	17
Genome and transcriptome analyses reveal genes involved in the formation of fine ridges on petal epidermal cells in Hibiscus trionum	17
De novo whole-genome assembly in an interspecific hybrid table grape, ‘Shine Muscat’	16
The methanogen core and pangenome: conservation and variability across biology’s growth temperature extremes	16
The chromosome-scale genome of Kobresia myosuroides sheds light on karyotype evolution and recent diversification of a dominant herb group on the Qinghai-Tibet Plateau	15
Satellite DNAs rising from the transposon graveyards	15
Nearly T2T, phased genome assemblies of corals reveal haplotype diversity and the evolutionary process of gene expansion	14
Draft genome sequence and tissue expression panel of Pacific saury (Cololabis saira)	13
Chromosome-scale assembly of barley cv. ‘Haruna Nijo’ as a resource for barley genetics	12
The burst of satellite DNA in Leptidea wood white butterflies and their putative role in karyotype evolution	12

Genome analysis of five recently described species of the CUG-Ser clade uncoversCandida theaeas a new hybrid lineage with pathogenic potential in theCandida parapsilosisspecies complex	12
The genome of Pleurosigma provides insights into the evolutionary adaptations of pelagic diatoms	11
Chromosome-level assembly and annotation of the Xyrichtys novacula (Linnaeus, 1758) genome	11
Chromosome-level assembly, annotation and phylome of Pelobates cultripes, the western spadefoot toad	11
Mituru Takanami, 1929–2022	11
The genome sequence and demographic history of Przewalskia tangutica (Solanaceae), an endangered alpine plant on the Qinghai–Tibet Plateau	11
Chromosome-level genome of a leaf vegetableGlebionis coronariaprovides insights into the biosynthesis of monoterpenoids contributing to its special aroma	10
Chromosome-level genome assembly of Pontederia cordata L. provides insights into its rapid adaptation and variation of flower colours	10
Unravelling the genomic features, phylogeny and genetic basis of tooth ontogenesis in Characiformes through analysis of four genomes	9
Chromosomal DNA sequences of the Pacific saury genome: versatile resources for fishery science and comparative biology	9
Dynamic integration and evolutionary trajectory of endogenous IHHNV elements in crustacean genomes	8
Population genetic analysis based on the polymorphisms mediated by transposons in the genomes of pig	7
Chromosome-level genome assembly of Lilford’s wall lizard, Podarcis lilfordi (Günther, 1874) from the Balearic Islands (Spain)	7
Life inside a bag: multiomics insights into the bagworm species Eumeta crameri	7
Genome assembly and transcriptomic analyses of the repeatedly rejuvenating jellyfish Turritopsis dohrnii	7
Characterization of proteogenomic signatures of differentiation of CD4+ T cell subsets	7
The genome ofLyophyllum shimejiprovides insight into the initial evolution of ectomycorrhizal fungal genomes	7
A high-quality genome assembly of Annona squamosa (custard apple) provides functional insights into an emerging fruit crop	6
Chromosome-level genome assembly of Phrynocephalus forsythii using third-generation DNA sequencing and Hi-C analysis	6
Genome assembly of the temporary socially parasitic spiny ant Polyrhachis lamellidens and its host Camponotus japonicus	6
Chromosome-scale haplotype-phased genome assemblies of the male and female lines of wild asparagus ( Asparagus kiusianus ), a dioecious plant species	6
Patterns and drivers of genome-wide codon usage bias in the fungal order Sordariales	6
Inventory of ATP-binding cassette proteins inLithospermum erythrorhizonas a model plant producing divergent secondary metabolites	6
Comparative genomics of endophytic fungi Apiospora malaysiana with related ascomycetes indicates adaptation attuned to lifestyle choices with potential sustainable cellulolytic activity	5
Chromosome-level genome assembly of the endangered plant Tetraena mongolica	5
Genome assembly and insights into globally invasive Red-vented Bulbul ( Pycnonotus cafer )	5
GINGER: an integrated method for high-accuracy prediction of gene structure in higher eukaryotes at the gene and exon level	5
Chromosome-scale genome assembly of acerola ( Malpighia emarginata DC.)	5
Can classical statistics and deep learning converge on explainable, causally driven target discovery?	5
The chromosome-level genome of Chinese indicine cattle breed provides insights into bovine adaptation and immunity	5
Integrative transcriptomic analysis reveals alternative splicing complexity and transcriptomic diversity in porcine placentas across altitudes	5
Assessing genetic diversity and geographical differentiation in a global collection of wild soybean (Glycine soja Sieb. et Zucc.) and assigning a mini-core collection	5
Correction to: Chromosome-level genome assembly of the medicinal insect Blaps rhynchopetera using Nanopore and Hi-C technologies	5
Chromosome-level genome of butterflyfish unveils genomic features of unique colour patterns and morphological traits	4
Epigenetic control of tetrapyrrole biosynthesis by m4C DNA methylation in a cyanobacterium	4
Detection of tandem repeats in the Capsicum annuum genome	4
Churros: a Docker-based pipeline for large-scale epigenomic analysis	4
Chromosome-level genome assembly and demographic history of Euryodendron excelsum in monotypic genus endemic to China	4
MIG-seq is an effective method for high-throughput genotyping in wheat (Triticum spp.)	4
Genome survey and evolutionary analysis of 8 Lamprotula species: SSR profiling, mitochondrial characterization, and population dynamics inference	4
Telomere-to-telomere genome assembly of an allotetraploid pernicious weed, Echinochloa phyllopogon	4
Chromosome-level genome assembly of an endangered plant Prunus mongolica using PacBio and Hi-C technologies	4
Self-grafting-induced epigenetic changes leading to drought stress tolerance in tomato plants	4
A fully phased, chromosome-scale genome of sugar beet line FC309 enables the discovery of Fusarium yellows resistance QTL	4
Universal Surface Biotinylation: a simple, versatile and cost-effective sample multiplexing method for single-cell RNA-seq analysis	3
Propagation path of a flowering cherry ( Cerasus × yedoensis ) cultivar ‘Somei-Yoshino’ traced by somatic	3
A chromosomal-scale reference genome of the New World Screwworm,Cochliomyia hominivorax	3
Evolution of the viral genomes of SARS-CoV-2 in association with the changes in local condition: a genomic epidemiological study of a suburban city of Japan	3
Correction to: Mituru Takanami, 1929–2022	3
Chromosome-scale genome assembly of Sauvagesia rhodoleuca (Ochnaceae) provides insights into its genome evolution and demographic history	3

Chromosome-level genome assembly of the yeast Lodderomyces beijingensis reveals the genetic nature of metabolic adaptations and identifies subtelomeres as hotspots for amplification of mating t	3
A contiguous de novo genome assembly of sugar beet EL10 ( Beta vulgaris L.)	3
Strain-level dissection of complex rhizoplane and soil bacterial communities using single-cell genomics and metagenomics	3
The genome of a globally invasive passerine, the common myna, Acridotheres tristis	3
Assessment of metagenomic workflows using a newly constructed human gut microbiome mock community	3