OOIR: Observatory of International Research

Papers

(The median citation count of DNA Research is 3. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2022-05-01 to 2026-05-01.)

Article	Citations
Chromosome-level genome assembly of the medicinal insect Blaps rhynchopetera using Nanopore and Hi-C technologies	65
Comparative genomics of native plasmids from plant pathogenic Gammaproteobacteria	46
Near-complete telomere-to-telomere de novo genome assembly in Egyptian clover (Trifolium alexandrinum)	43
Thin-diaPASEF: diaPASEF for maximizing proteome coverage in single-shot proteomics	40
A chromosome-level genome assembly of the pollinating fig wasp Valisia javana	28
The haplotype-phased genome assembly facilitated the deciphering of the bud dormancy-related QTLs in Prunus mume	27
Hybrid genome assembly of the widespread bat Rhinolophus lepidus provides insights into susceptibility to SARS-CoV-2 infection and climate change threat	26
A haplotype-resolved reference genome of a long-distance migratory bat, Pipistrellus nathusii (Keyserling & Blasius, 1839)	23
Genome assembly of the pioneer speciesPlantago majorL. (Plantaginaceae) provides insight into its global distribution and adaptation to metal-contaminated soil	20
Functional landscape of genome-wide postzygotic somatic mutations between monozygotic twins	20
Characterization of transcriptome changes in saline stress adaptation on Leuciscus merzbacheri using PacBio Iso-Seq and RNA-Seq	19
Hybrid de novo genome assembly of the sexually dimorphic Lady Amherst’s pheasant	18
Genome assembly of Genji firefly (Nipponoluciola cruciata) reveals novel luciferase-like luminescent proteins without peroxisome targeting signal	18
Genome and transcriptome analyses reveal genes involved in the formation of fine ridges on petal epidermal cells in Hibiscus trionum	17
Chromosome-scale genome assembly of Malcolmia littorea using long-read sequencing and single-pollen genotyping technologies	17
The chromosome-scale genome of Kobresia myosuroides sheds light on karyotype evolution and recent diversification of a dominant herb group on the Qinghai-Tibet Plateau	16
Chromosome-level genome assembly and annotation of the black sea urchin Arbacia lixula (Linnaeus, 1758)	15
The methanogen core and pangenome: conservation and variability across biology’s growth temperature extremes	13
Improved assembly and annotation of the sesame genome	13
Nearly T2T, phased genome assemblies of corals reveal haplotype diversity and the evolutionary process of gene expansion	12
Satellite DNAs rising from the transposon graveyards	12
The genome sequence and demographic history of Przewalskia tangutica (Solanaceae), an endangered alpine plant on the Qinghai–Tibet Plateau	12
De novo whole-genome assembly in an interspecific hybrid table grape, ‘Shine Muscat’	12
The burst of satellite DNA in Leptidea wood white butterflies and their putative role in karyotype evolution	11
Draft genome sequence and tissue expression panel of Pacific saury (Cololabis saira)	11

The genome of Pleurosigma provides insights into the evolutionary adaptations of pelagic diatoms	10
Chromosome-level assembly, annotation and phylome of Pelobates cultripes, the western spadefoot toad	9
Mituru Takanami, 1929–2022	9
Chromosome-level assembly and annotation of the Xyrichtys novacula (Linnaeus, 1758) genome	9
Chromosomal DNA sequences of the Pacific saury genome: versatile resources for fishery science and comparative biology	8
Chromosome-level genome of a leaf vegetableGlebionis coronariaprovides insights into the biosynthesis of monoterpenoids contributing to its special aroma	8
Dynamic integration and evolutionary trajectory of endogenous IHHNV elements in crustacean genomes	8
Chromosome-level genome assembly of Pontederia cordata L. provides insights into its rapid adaptation and variation of flower colours	8
Characterization of proteogenomic signatures of differentiation of CD4+ T cell subsets	8
Unravelling the genomic features, phylogeny and genetic basis of tooth ontogenesis in Characiformes through analysis of four genomes	8
Life inside a bag: multiomics insights into the bagworm species Eumeta crameri	7
The genome ofLyophyllum shimejiprovides insight into the initial evolution of ectomycorrhizal fungal genomes	7
Population genetic analysis based on the polymorphisms mediated by transposons in the genomes of pig	7
Chromosome-level genome assembly of Phrynocephalus forsythii using third-generation DNA sequencing and Hi-C analysis	7
Genome assembly and transcriptomic analyses of the repeatedly rejuvenating jellyfish Turritopsis dohrnii	7
A high-quality genome assembly of Annona squamosa (custard apple) provides functional insights into an emerging fruit crop	6
Genome assembly of the temporary socially parasitic spiny ant Polyrhachis lamellidens and its host Camponotus japonicus	6
Patterns and drivers of genome-wide codon usage bias in the fungal order Sordariales	6
Chromosome-scale genome assembly of acerola ( Malpighia emarginata DC.)	6
Inventory of ATP-binding cassette proteins inLithospermum erythrorhizonas a model plant producing divergent secondary metabolites	6
Chromosome-level genome assembly of Lilford’s wall lizard, Podarcis lilfordi (Günther, 1874) from the Balearic Islands (Spain)	6
Assessing genetic diversity and geographical differentiation in a global collection of wild soybean (Glycine soja Sieb. et Zucc.) and assigning a mini-core collection	6
Correction to: Chromosome-level genome assembly of the medicinal insect Blaps rhynchopetera using Nanopore and Hi-C technologies	5
Silver chimaera genome highlights lineage-specific sex chromosome and opsin gene evolution in holocephalans	5
GINGER: an integrated method for high-accuracy prediction of gene structure in higher eukaryotes at the gene and exon level	5
Chromosome-level genome of butterflyfish unveils genomic features of unique colour patterns and morphological traits	5
Chromosome-level genome assembly and demographic history of Euryodendron excelsum in monotypic genus endemic to China	5
Chromosome-level genome assembly of the endangered plant Tetraena mongolica	5
Genome assembly and insights into globally invasive Red-vented Bulbul ( Pycnonotus cafer )	5
The chromosome-level genome of Chinese indicine cattle breed provides insights into bovine adaptation and immunity	5
Chromosome-level genome assembly of an endangered plant Prunus mongolica using PacBio and Hi-C technologies	5
Integrative transcriptomic analysis reveals alternative splicing complexity and transcriptomic diversity in porcine placentas across altitudes	5
Comparative genomics of endophytic fungi Apiospora malaysiana with related ascomycetes indicates adaptation attuned to lifestyle choices with potential sustainable cellulolytic activity	5
Can classical statistics and deep learning converge on explainable, causally driven target discovery?	5
Epigenetic control of tetrapyrrole biosynthesis by m4C DNA methylation in a cyanobacterium	5
Genome survey and evolutionary analysis of 8 Lamprotula species: SSR profiling, mitochondrial characterization, and population dynamics inference	4
Churros: a Docker-based pipeline for large-scale epigenomic analysis	4
Correction to: Mituru Takanami, 1929–2022	4
A fully phased, chromosome-scale genome of sugar beet line FC309 enables the discovery of Fusarium yellows resistance QTL	4
Detection of tandem repeats in the Capsicum annuum genome	4
Evolution of the viral genomes of SARS-CoV-2 in association with the changes in local condition: a genomic epidemiological study of a suburban city of Japan	4
Self-grafting-induced epigenetic changes leading to drought stress tolerance in tomato plants	4
Telomere-to-telomere genome assembly of an allotetraploid pernicious weed, Echinochloa phyllopogon	4
Chromosome-level genome assembly of the Gerbera ( Gerbera hybrida ) using HiFi long-read and Hi-C technologies	4
A contiguous de novo genome assembly of sugar beet EL10 ( Beta vulgaris L.)	4
Assessment of metagenomic workflows using a newly constructed human gut microbiome mock community	3
Chromosome-level genome assembly of the yeast Lodderomyces beijingensis reveals the genetic nature of metabolic adaptations and identifies subtelomeres as hotspots for amplification of mating t	3
Strain-level dissection of complex rhizoplane and soil bacterial communities using single-cell genomics and metagenomics	3
Propagation path of a flowering cherry ( Cerasus × yedoensis ) cultivar ‘Somei-Yoshino’ traced by somatic	3
Construction of prediction models for growth traits of soybean cultivars based on phenotyping in diverse genotype and environment combinations	3

A high-quality, haplotype-phased genome reconstruction reveals unexpected haplotype diversity in a pearl oyster	3
The genome of a globally invasive passerine, the common myna, Acridotheres tristis	3
Universal Surface Biotinylation: a simple, versatile and cost-effective sample multiplexing method for single-cell RNA-seq analysis	3
Giant linear plasmids in Mycobacterium avium harbour a tRNA array unit	3
A chromosomal-scale reference genome of the New World Screwworm,Cochliomyia hominivorax	3
Chromosome-scale genome assembly of Sauvagesia rhodoleuca (Ochnaceae) provides insights into its genome evolution and demographic history	3