DNA Research

Papers
(The median citation count of DNA Research is 3. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-08-01 to 2025-08-01.)
ArticleCitations
Chromosomal-level genome assembly of the orchid tree Bauhinia variegata (Leguminosae; Cercidoideae) supports the allotetraploid origin hypothesis of Bauhinia42
Chromosome-level genome assembly of the medicinal insect Blaps rhynchopetera using Nanopore and Hi-C technologies34
A chromosome-level genome assembly of the pollinating fig wasp Valisia javana31
Near-complete telomere-to-telomere de novo genome assembly in Egyptian clover (Trifolium alexandrinum)26
Comparative genomics of native plasmids from plant pathogenic Gammaproteobacteria25
Thin-diaPASEF: diaPASEF for maximizing proteome coverage in single-shot proteomics24
Hybrid genome assembly of the widespread bat Rhinolophus lepidus provides insights into susceptibility to SARS-CoV-2 infection and climate change threat20
A haplotype-resolved reference genome of a long-distance migratory bat, Pipistrellus nathusii (Keyserling & Blasius, 1839)19
Characterization of transcriptome changes in saline stress adaptation on Leuciscus merzbacheri using PacBio Iso-Seq and RNA-Seq18
The haplotype-phased genome assembly facilitated the deciphering of the bud dormancy-related QTLs in Prunus mume18
Genome assembly of Genji firefly (Nipponoluciola cruciata) reveals novel luciferase-like luminescent proteins without peroxisome targeting signal18
Functional landscape of genome-wide postzygotic somatic mutations between monozygotic twins18
Genome assembly of the pioneer speciesPlantago majorL. (Plantaginaceae) provides insight into its global distribution and adaptation to metal-contaminated soil18
Hybrid de novo genome assembly of the sexually dimorphic Lady Amherst’s pheasant17
Chromosome-level genome assembly and annotation of the black sea urchin Arbacia lixula (Linnaeus, 1758)17
Improved assembly and annotation of the sesame genome17
The methanogen core and pangenome: conservation and variability across biology’s growth temperature extremes17
The chromosome-scale genome of Kobresia myosuroides sheds light on karyotype evolution and recent diversification of a dominant herb group on the Qinghai-Tibet Plateau16
Transcriptomes and DNA methylomes in apomictic cells delineate nucellar embryogenesis initiation in citrus16
Genome and transcriptome analyses reveal genes involved in the formation of fine ridges on petal epidermal cells in Hibiscus trionum16
De novowhole-genome assembly in an interspecific hybrid table grape, ‘Shine Muscat’16
Genome-wide identification and characterization of Fur-binding sites in the cyanobacteria Synechocystis sp. PCC 6803 and PCC 671415
Chromosome-level assembly, annotation and phylome of Pelobates cultripes, the western spadefoot toad15
Chromosome-scale assembly of barley cv. ‘Haruna Nijo’ as a resource for barley genetics14
The burst of satellite DNA in Leptidea wood white butterflies and their putative role in karyotype evolution14
Genome analysis of five recently described species of the CUG-Ser clade uncoversCandida theaeas a new hybrid lineage with pathogenic potential in theCandida parapsilosisspecies complex14
The genome sequence and demographic history of Przewalskia tangutica (Solanaceae), an endangered alpine plant on the Qinghai–Tibet Plateau13
Chromosome-level genome assembly of Pontederia cordata L. provides insights into its rapid adaptation and variation of flower colours13
Draft genome sequence and tissue expression panel of Pacific saury (Cololabis saira)13
Nearly T2T, phased genome assemblies of corals reveal haplotype diversity and the evolutionary process of gene expansion13
Mituru Takanami, 1929–202212
Dynamic integration and evolutionary trajectory of endogenous IHHNV elements in crustacean genomes11
Chromosome-level assembly and annotation of the Xyrichtys novacula (Linnaeus, 1758) genome11
Unravelling the genomic features, phylogeny and genetic basis of tooth ontogenesis in Characiformes through analysis of four genomes11
Genome sequencing and analysis of two early-flowering cherry (Cerasus × kanzakura) varieties, ‘Kawazu-zakura’ and ‘Atami-zakura’11
Chromosome-level genome of a leaf vegetableGlebionis coronariaprovides insights into the biosynthesis of monoterpenoids contributing to its special aroma11
Characterization of proteogenomic signatures of differentiation of CD4+ T cell subsets10
Long-read metagenomics of multiple displacement amplified DNA of low-biomass human gut phageomes by SACRA pre-processing chimeric reads9
Chromosomal DNA sequences of the Pacific saury genome: versatile resources for fishery science and comparative biology9
Chromosome-level genome assembly of Lilford’s wall lizard, Podarcis lilfordi (Günther, 1874) from the Balearic Islands (Spain)9
Genome assembly and transcriptomic analyses of the repeatedly rejuvenating jellyfish Turritopsis dohrnii9
Chromosome-level genome assembly of Phrynocephalus forsythii using third-generation DNA sequencing and Hi-C analysis9
Integrating a genome-wide association study with transcriptomic data to predict candidate genes and favourable haplotypes influencing Brassica napus seed phytate9
Population genetic analysis based on the polymorphisms mediated by transposons in the genomes of pig9
The genome ofLyophyllum shimejiprovides insight into the initial evolution of ectomycorrhizal fungal genomes9
Inventory of ATP-binding cassette proteins inLithospermum erythrorhizonas a model plant producing divergent secondary metabolites8
Chromosome-scale haplotype-phased genome assemblies of the male and female lines of wild asparagus (Asparagus kiusianus), a dioecious plant species8
A high-quality genome assembly of Annona squamosa (custard apple) provides functional insights into an emerging fruit crop8
Integrative transcriptomic analysis reveals alternative splicing complexity and transcriptomic diversity in porcine placentas across altitudes7
Chromosome-scale genome assembly of acerola (Malpighia emarginata DC.)7
Genome assembly of the temporary socially parasitic spiny ant Polyrhachis lamellidens and its host Camponotus japonicus7
Chromosome-level genome assembly of the endangered plant Tetraena mongolica7
Assessing genetic diversity and geographical differentiation in a global collection of wild soybean (Glycine soja Sieb. et Zucc.) and assigning a mini-core collection6
Correction to: Chromosome-level genome assembly of the medicinal insect Blaps rhynchopetera using Nanopore and Hi-C technologies6
GINGER: an integrated method for high-accuracy prediction of gene structure in higher eukaryotes at the gene and exon level5
Chromosome-level genome assembly and demographic history of Euryodendron excelsum in monotypic genus endemic to China5
Chromosome-level genome of butterflyfish unveils genomic features of unique colour patterns and morphological traits5
Chromosome-level genome assembly of Japanese chestnut (Castanea crenata Sieb. et Zucc.) reveals conserved chromosomal segments in woody rosids5
MIG-seq is an effective method for high-throughput genotyping in wheat (Triticum spp.)5
Comparative genomics of endophytic fungi Apiospora malaysiana with related ascomycetes indicates adaptation attuned to lifestyle choices with potential sustainable cellulolytic activity5
Epigenetic control of tetrapyrrole biosynthesis by m4C DNA methylation in a cyanobacterium5
Chromosome-level genome assembly of an endangered plant Prunus mongolica using PacBio and Hi-C technologies4
Telomere-to-telomere genome assembly of an allotetraploid pernicious weed, Echinochloa phyllopogon4
Self-grafting-induced epigenetic changes leading to drought stress tolerance in tomato plants4
Genomic characterization of four novel bacteriophages infecting the clinical pathogen Klebsiella pneumoniae4
A fully phased, chromosome-scale genome of sugar beet line FC309 enables the discovery of Fusarium yellows resistance QTL4
Detection of tandem repeats in the Capsicum annuum genome4
A high-quality chromosome-level genome of wild Rosa rugosa3
Evolution of the viral genomes of SARS-CoV-2 in association with the changes in local condition: a genomic epidemiological study of a suburban city of Japan3
A chromosomal-scale reference genome of the New World Screwworm,Cochliomyia hominivorax3
Propagation path of a flowering cherry (Cerasus × yedoensis) cultivar ‘Somei-Yoshino’ traced by somatic mutations3
Chromosome-level genome assembly of the yeast Lodderomyces beijingensis reveals the genetic nature of metabolic adaptations and identifies subtelomeres as hotspots for amplification of mating t3
ZSCAN4-binding motif—TGCACAC is conserved and enriched in CA/TG microsatellites in both mouse and human genomes3
Churros: a Docker-based pipeline for large-scale epigenomic analysis3
Universal Surface Biotinylation: a simple, versatile and cost-effective sample multiplexing method for single-cell RNA-seq analysis3
The genome of a globally invasive passerine, the common myna, Acridotheres tristis3
Genome-wide simple sequence repeat markers in potato: abundance, distribution, composition, and polymorphism3
A high-quality, haplotype-phased genome reconstruction reveals unexpected haplotype diversity in a pearl oyster3
Constitutive expression of the global regulator AbrB restores the growth defect of a genome-reduced Bacillus subtilis strain and improves its metabolite production3
A contiguous de novo genome assembly of sugar beet EL10 (Beta vulgaris L.)3
Correction to: Mituru Takanami, 1929–20223
Spatial and single-cell transcriptome analysis reveals changes in gene expression in response to drug perturbation in rat kidney3
Assessment of metagenomic workflows using a newly constructed human gut microbiome mock community3
Metagenomic Thermometer3
Construction of prediction models for growth traits of soybean cultivars based on phenotyping in diverse genotype and environment combinations3
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