DNA Research

Papers
(The median citation count of DNA Research is 3. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2022-08-01 to 2026-08-01.)
ArticleCitations
Chromosome-level genome assembly of the medicinal insect Blaps rhynchopetera using Nanopore and Hi-C technologies67
Near-complete telomere-to-telomere de novo genome assembly in Egyptian clover (Trifolium alexandrinum)50
Comparative genomics of native plasmids from plant pathogenic Gammaproteobacteria47
Thin-diaPASEF: diaPASEF for maximizing proteome coverage in single-shot proteomics33
Functional landscape of genome-wide postzygotic somatic mutations between monozygotic twins28
A haplotype-resolved reference genome of a long-distance migratory bat, Pipistrellus nathusii (Keyserling & Blasius, 1839)27
Hybrid genome assembly of the widespread bat Rhinolophus lepidus provides insights into susceptibility to SARS-CoV-2 infection and climate change threat25
Characterization of transcriptome changes in saline stress adaptation on Leuciscus merzbacheri using PacBio Iso-Seq and RNA-Seq21
The haplotype-phased genome assembly facilitated the deciphering of the bud dormancy-related QTLs in Prunus mume21
Genome assembly of the pioneer speciesPlantago majorL. (Plantaginaceae) provides insight into its global distribution and adaptation to metal-contaminated soil19
Chromosome-scale genome assembly of Malcolmia littorea using long-read sequencing and single-pollen genotyping technologies17
Hybrid de novo genome assembly of the sexually dimorphic Lady Amherst’s pheasant17
The chromosome-scale genome of Kobresia myosuroides sheds light on karyotype evolution and recent diversification of a dominant herb group on the Qinghai-Tibet Plateau17
Genome assembly of Genji firefly (Nipponoluciola cruciata) reveals novel luciferase-like luminescent proteins without peroxisome targeting signal17
De novo whole-genome assembly in an interspecific hybrid table grape, ‘Shine Muscat’15
Genome and transcriptome analyses reveal genes involved in the formation of fine ridges on petal epidermal cells in Hibiscus trionum14
Chromosome-level genome assembly and annotation of the black sea urchin Arbacia lixula (Linnaeus, 1758)13
The methanogen core and pangenome: conservation and variability across biology’s growth temperature extremes13
Improved assembly and annotation of the sesame genome13
The genome sequence and demographic history of Przewalskia tangutica (Solanaceae), an endangered alpine plant on the Qinghai–Tibet Plateau12
The genome of Pleurosigma provides insights into the evolutionary adaptations of pelagic diatoms12
Draft genome sequence and tissue expression panel of Pacific saury (Cololabis saira)12
Nearly T2T, phased genome assemblies of corals reveal haplotype diversity and the evolutionary process of gene expansion12
Satellite DNAs rising from the transposon graveyards12
The burst of satellite DNA in Leptidea wood white butterflies and their putative role in karyotype evolution10
Mituru Takanami, 1929–20229
Enrichment-Free Deep Proteomics Enables Proteome-Scale Analysis of Methionine Oxidation8
Unravelling the genomic features, phylogeny and genetic basis of tooth ontogenesis in Characiformes through analysis of four genomes8
The genome of a keystone predator: adaptive innovations in Charonia tritonis drive specialized predation and coral reef resilience8
Chromosome-level genome assembly of Pontederia cordata L. provides insights into its rapid adaptation and variation of flower colours8
Chromosome-level assembly and annotation of the Xyrichtys novacula (Linnaeus, 1758) genome8
Chromosome-level genome of a leaf vegetableGlebionis coronariaprovides insights into the biosynthesis of monoterpenoids contributing to its special aroma8
Characterization of proteogenomic signatures of differentiation of CD4+ T cell subsets7
Life inside a bag: multiomics insights into the bagworm species Eumeta crameri7
Population genetic analysis based on the polymorphisms mediated by transposons in the genomes of pig7
Dynamic integration and evolutionary trajectory of endogenous IHHNV elements in crustacean genomes7
Genome assembly and transcriptomic analyses of the repeatedly rejuvenating jellyfish Turritopsis dohrnii7
Chromosomal DNA sequences of the Pacific saury genome: versatile resources for fishery science and comparative biology7
Chromosome-level genome assembly of Lilford’s wall lizard, Podarcis lilfordi (Günther, 1874) from the Balearic Islands (Spain)7
Patterns and drivers of genome-wide codon usage bias in the fungal order Sordariales6
The genome ofLyophyllum shimejiprovides insight into the initial evolution of ectomycorrhizal fungal genomes6
Chromosome-level genome assembly of Phrynocephalus forsythii using third-generation DNA sequencing and Hi-C analysis6
Genome assembly of the temporary socially parasitic spiny ant Polyrhachis lamellidens and its host Camponotus japonicus5
Chromosome-level genome assembly of the endangered plant Tetraena mongolica5
Correction to: Chromosome-level genome assembly of the medicinal insect Blaps rhynchopetera using Nanopore and Hi-C technologies5
A high-quality genome assembly of Annona squamosa (custard apple) provides functional insights into an emerging fruit crop5
Chromosome-scale genome assembly of acerola ( Malpighia emarginata DC.)5
Integrative transcriptomic analysis reveals alternative splicing complexity and transcriptomic diversity in porcine placentas across altitudes5
GINGER: an integrated method for high-accuracy prediction of gene structure in higher eukaryotes at the gene and exon level5
PFGPred: a stack ensemble classifier for the identification of fusion genes in plants5
Silver chimaera genome highlights lineage-specific sex chromosome and opsin gene evolution in holocephalans5
Genome assembly and insights into globally invasive Red-vented Bulbul ( Pycnonotus cafer )5
Assessing genetic diversity and geographical differentiation in a global collection of wild soybean (Glycine soja Sieb. et Zucc.) and assigning a mini-core collection5
Chromosome-level genome of butterflyfish unveils genomic features of unique colour patterns and morphological traits4
Detection of tandem repeats in the Capsicum annuum genome4
A contiguous de novo genome assembly of sugar beet EL10 ( Beta vulgaris L.)4
A fully phased, chromosome-scale genome of sugar beet line FC309 enables the discovery of Fusarium yellows resistance QTL4
Comparative genomics of endophytic fungi Apiospora malaysiana with related ascomycetes indicates adaptation attuned to lifestyle choices with potential sustainable cellulolytic activity4
Chromosome-level genome assembly of an endangered plant Prunus mongolica using PacBio and Hi-C technologies4
Can classical statistics and deep learning converge on explainable, causally driven target discovery?4
Genome survey and evolutionary analysis of 8 Lamprotula species: SSR profiling, mitochondrial characterization, and population dynamics inference4
Chromosome-level genome assembly of the Gerbera ( Gerbera hybrida ) using HiFi long-read and Hi-C technologies4
Epigenetic control of tetrapyrrole biosynthesis by m4C DNA methylation in a cyanobacterium4
Self-grafting-induced epigenetic changes leading to drought stress tolerance in tomato plants4
The chromosome-level genome of Chinese indicine cattle breed provides insights into bovine adaptation and immunity4
Churros: a Docker-based pipeline for large-scale epigenomic analysis4
Telomere-to-telomere genome assembly of an allotetraploid pernicious weed, Echinochloa phyllopogon4
Chromosome-level genome assembly and demographic history of Euryodendron excelsum in monotypic genus endemic to China4
Strain-level dissection of complex rhizoplane and soil bacterial communities using single-cell genomics and metagenomics3
Propagation path of a flowering cherry ( Cerasus × yedoensis ) cultivar ‘Somei-Yoshino’ traced by somatic 3
SIEVEseq: Unified differential expression, variability, and skewness analyses using RNA-Seq data3
Giant linear plasmids in Mycobacterium avium harbour a tRNA array unit3
A chromosomal-scale reference genome of the New World Screwworm,Cochliomyia hominivorax3
Chromosome-scale genome assembly of Sauvagesia rhodoleuca (Ochnaceae) provides insights into its genome evolution and demographic history3
Chromosome-level genome assembly of the yeast Lodderomyces beijingensis reveals the genetic nature of metabolic adaptations and identifies subtelomeres as hotspots for amplification of mating t3
A high-quality, haplotype-phased genome reconstruction reveals unexpected haplotype diversity in a pearl oyster3
Metagenomic Thermometer3
Evolution of the viral genomes of SARS-CoV-2 in association with the changes in local condition: a genomic epidemiological study of a suburban city of Japan3
The genome of a globally invasive passerine, the common myna, Acridotheres tristis3
Correction to: Mituru Takanami, 1929–20223
ZSCAN4-binding motif—TGCACAC is conserved and enriched in CA/TG microsatellites in both mouse and human genomes3
Assessment of metagenomic workflows using a newly constructed human gut microbiome mock community3
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