Genes to Cells

Article	Citations
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DNMT1 can induce primary germ layer differentiation through de novo DNA methylation	25
Issue Information	25
Cellular and molecular mechanisms of asymmetric stem cell division in tissue homeostasis	17
Dynamics of actomyosin filaments in the contractile ring revealed by ultrastructural analysis	16
GTP‐dependent regulation of heterochromatin fluctuations at subtelomeric regions in Saccharomyces cerevisiae	15
A novel transcription factor Sdr1 involving sulfur depletion response in fission yeast	13
Histone H3.3 chaperone HIRA renders stress‐responsive genes poised for prospective lethal stresses in acquired tolerance	12
CdsA, a CDP‐diacylglycerol synthase involved in phospholipid and glycolipid MPIase biosynthesis, possesses multiple initiation codons	12
A simple, rapid, and efficient method for generating multigene‐knockout culture cells by the CRISPR/Cas9 system	11
“The 10th International MDM2 Workshop”: Opening up new avenues for MDM2 and p53 research, the First International MDM2 Workshop in Asia	11
Luciferase‐based quantification of membrane fusion induced by SARS‐CoV‐2 S protein	11
The 33rd International Conference on Arabidopsis Research (ICAR2023)	11
Neonatal Fc receptor is a functional receptor for classical human astrovirus	10
HIF1α Plays a Crucial Role in the Development of TFE3–Rearranged Renal Cell Carcinoma by Orchestrating a Metabolic Shift Toward Fatty Acid Synthesis	9
A Transition From Interindividual Uniformity to Diversity in Appearance and Transcriptional Features at Midlife in Caenorhabditis elegans	9
Correction to “The Protein Kinase aPKC as Well as the Small GTPases RhoA and Cdc42 Regulates Neutrophil Chemotaxis Partly by Recruiting the ROCK Kinase to the Leading	9
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The HAT Inhibitor ISOX‐DUAL Diminishes Ischemic Areas in a Mouse Model of Oxygen‐Induced Retinopathy	7
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Daidara: A gigantic Gypsy LTR retrotransposon lineage in the springtail Allacma fusca genome	7
Identification ofksg1mutation showing long‐lived phenotype in fission yeast	7
The iron chelator deferriferrichrysin induces paraptosis via extracellular signal‐related kinase activation in cancer cells	7

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Notch signaling pathway suppresses mRNA expression of hexokinase 2 under nutrient‐poor conditions in U87‐MG glioma cells	6
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N‐terminal Ago‐binding domain of GW182 contains a tryptophan‐rich region that confer binding to the CCR4–NOT complex	6
T‐cell receptor repertoire analysis of CD4‐positive T cells from blood and an affected organ in an autoimmune mouse model	6
Identification of genes contributing to attenuation of rat model of galactose‐induced cataract by pyruvate	6
Maternal epigenetic factors in embryonic and postnatal development	6
N‐(3,4‐dimethoxyphenethyl)‐6‐methyl‐2,3,4,9‐tetrahydro‐1H‐carbazol‐1‐amine inhibits bladder cancer progression by suppressing YAP1/TAZ	6
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Interferon‐Dependent Expression of the Human STAT1 Gene Requires a Distal Regulatory Region Located Approximately 6 kb Upstream for Its Autoregulatory System	6
The scaffold protein IQGAP1 promotes reorientation of epithelial cell polarity at the two‐cell stage for cystogenesis	6
Brain‐derived neurotrophic factor (BDNF) downregulates mRNA levels of suppressor of cancer cell invasion (SCAI) variants in cortical neurons	6
Pathogen challenge in Arabidopsis cotyledons induces enhanced disease resistance at newly formed rosette leaves via sustained upregulation of WRKY70	6
Loss of Caenorhabditis elegans homologue of human MOB4 compromises life span, health life span and thermotolerance	6
Issue Information	6
ATP2B4 is an essential gene for epidermal growth factor‐induced macropinocytosis in A431 cells	6
Author Index	5
Squamous cell carcinoma‐derived G‐CSF promotes tumor growth and metastasis in mice through neutrophil recruitment and tumor cell proliferation, associated with poor prognosis of the patient	5
Long Noncoding RNA CCDC26 Interacts With Vimentin, HNRNPC, CBX1, and CBX5 Proteins in Multiple Intracellular Compartments of Myeloid Leukemia Cells	5
Importin α2 association with chromatin: Direct DNA binding via a novel DNA‐binding domain	5
Mrc1Claspin is essential for heterochromatin maintenance in Schizosaccharomyces pombe	5
Necdin: A purposive integrator of molecular interaction networks for mammalian neuron vitality	5
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WDR74‐Mediated Ribosome Biogenesis and Proteome Dynamics During Mouse Preimplantation Development	5
BACH1 regulates erythrophagocytosis and iron‐recycling in β‐thalassemia	5
Megakaryocyte maturation involves activation of the adaptive unfolded protein response	5
Effect of volatile fatty acids on adipocyte differentiation in bovine dedifferentiated fat (DFAT) cells in vitro	5
Lumicrine signaling: Extracellular regulation of sperm maturation in the male reproductive tract lumen	5
Issue Information	4
Visualizing looping of two endogenous genomic loci using synthetic zinc‐finger proteins with anti‐FLAG and anti‐HA frankenbodies in living cells	4
Defects in the H3t Gene Cause an Increase in Leydig Cells With Impaired Spermatogenesis in Mice	4
Protein degradation by a component of the chaperonin‐linked protease ClpP	4
Blockade of the interaction between BMP9 and endoglin on erythroid progenitors promotes erythropoiesis in mice	4
Multiple pathways and independent functional pools in insulin granule exocytosis	4
Regulation of Gut Starvation Responses Through DrosophilaNP3253 Neurons	4
Elimination of physiological senescent cutaneous cells in a novel p16‐dependent senolytic mouse model impacts lipid metabolism in skin aging	4
XRCC1 counteracts poly(ADP ribose)polymerase (PARP) poisons, olaparib and talazoparib, and a clinical alkylating agent, temozolomide, by promoting the removal of trapped PARP1 fr	4
Isolation of planarian viable cells using fluorescence‐activated cell sorting for advancing single‐cell transcriptome analysis	4
Bcat1 is controlled by Tsc2/mTORC1 pathway at expression levels and its deficiency together with Bcat2 inactivation suppresses the growth of a Tsc2−/− tumor cel	4
Glucolipids and lipoteichoic acids affect the activity of SigI, an alternative sigma factor, and WalKR, an essential two‐component system, in Bacillus subtilis	4
Image Analysis Characterizes Phenotypic Variation in the Growth of Mushroom‐Forming Fungus Schizophyllum commune	4
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Chromosomal rearrangements associated with SMC5/6 deficiency in DNA replication	3
The structure–function analysis of Obg‐like GTPase proteins along the evolutionary tree from bacteria to humans	3
The cell type‐specific ER membrane protein UGS148 is not essential in mice	3
Generation of Odorant Receptor‐QF2 Knock‐In Drivers for Improved Analysis of Olfactory Circuits in Drosophila	3
Fission yeast Ish1 and Les1 interact with each other in the lumen of the nuclear envelope	3

RNF213‐Dependent EGFR and HER2 Activation Regulates Specific Downstream Signaling Pathways in Human Cancer Cells	3
Meeting report: AT workshop 2023—A platform for discussing cutting‐edge science in DNA damage signaling, repair, and human disorders	3
Corrigendum	3
Lineage tracing using Wnt2b‐2A‐CreERT2 knock‐in mice reveals the contributions of Wnt2b‐expressing cells to novel subpopulations of mesothelial/epicardial cell lineages during mouse deve	3
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Absence of ULK1 decreases AMPK activity in the kidney, leading to chronic kidney disease progression	3
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Rapamycin Abrogates Aggregation of Human α‐Synuclein Expressed in Fission Yeast via an Autophagy‐Independent Mechanism	3
Long‐term sorbitol consumption affects the hippocampus and alters cognitive function in aged mice	3
INT6/eIF3e represses E‐cadherin expression through HIF2α in lung carcinoma A549 cells	3
Growth and division mode plasticity is dependent on cell density in marine‐derived black yeasts	3
Issue Information	3
ZomB is essential for chemotaxis of Vibrio alginolyticus by the rotational direction control of the polar flagellar motor	3
Correction to ‘The role of transcriptional coactivator TRAP220 in myelomonocytic differentiation’	3
Epithelial miR‐215 negatively modulates Th17‐dominant inflammation by inhibiting CXCL12 production in the small intestine	3
The 6th international cell senescence association conference	3
Glioma cells remotely promote erythropoiesis as a self‐expanding strategy of cancer stem cells	3
Pkd2, mutations linking to autosomal dominant polycystic kidney disease, localizes to the endoplasmic reticulum and regulates calcium signaling in fission yeast	3
Characteristics of Global Methylation Changes in F1 Mice Sperm DNA Induced by Gestational Arsenic Exposure Are Re‐Established in F2 Somatic Cells but Not in F2	2
The hibernation promoting factor of Betaproteobacteria Comamonas testosteroni cannot induce 100S ribosome formation but stabilizes 70S ribosomal particles	2
GM‐CSF‐producing CCR2+CCR6+ Th17 cells are pathogenic in dextran sodium sulfate‐induced colitis model in mice	2
Egg components reverse the atrophy induced by injury in skeletal muscles	2
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Iron‐Dependent JMJD1A‐Mediated Demethylation of H3K9me2 Regulates Gene Expression During Adipogenesis in a Spatial Genome Organization‐Dependent Manner	2
Mapping of the regions implicated in nuclear localization of multi‐functional DNA repair endonuclease XPF‐ERCC1	2
Search for putative gene regulatory motifs in CAHS3, linked to anhydrobiosis in a tardigrade Ramazzottius varieornatus, in vivo and in silico	2
Analysis of the responsiveness to antiandrogens in multiple breast cancer cell lines	2
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Dilp8 and its candidate receptor, Drl, are involved in the transdetermination of the Drosophila imaginal disc	2
The histone H3K36 demethylase Fbxl11 plays pivotal roles in the development of retinal late‐born cell types	2
Swimming Into Future Breakthroughs From Kyoto, Japan: Report of the 18th International Zebrafish Conference (IZFC2024)	2
CD41+ extracellular vesicles produced by avian thrombocytes contain microRNAs	2
Premature gray hair development in the interbrow region owing to the loss of maxillary first molars in young mice	2
Effect of Retinal on Dictyostelium Cells During Development	2
Interleukin‐3‐dependent potentiation of IgE responsiveness in mouse basophils	2
Issue Information	2
Advantages of Mutant Generation by Genome Rearrangements of Non‐Conventional Yeast via Direct Nuclease Transfection	2
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Regulation of constant cell elongation and Sfm pili synthesis in Escherichia coli via two active forms of FimZ orphan response regulator	2
Lineage tracing identifies in vitro microglia‐to‐neuron conversion by NeuroD1 expression	2
Isoliquiritigenin inhibits NLRP3 inflammasome activation with CAPS mutations by suppressing caspase‐1 activation and mutated NLRP3 aggregation	2
Extracellular α‐synuclein impairs sphingosine 1‐phosphate receptor type 3 (S1PR3)‐regulated lysosomal delivery of cathepsin D in HeLa cells	2
Activation of Evolutionarily Young Endogenous Retroviruses Is Implicated in COVID‐19 Immunopathology	2
The interaction between the import carrier Hikeshi and HSP70 is modulated by heat, facilitating the nuclear import of HSP70 under heat stress conditions	2
Ectopic expression of matrix metalloproteinases and filopodia extension via JNK activation are involved in the invasion of blood tumor cells in Drosophila mxc mutant	2
Loss of a single Zn finger, but not that of two Zn fingers, of GATA3 drives skin inflammation	2
Severe ethanol stress inhibits yeast proteasome activity at moderate temperatures but not at low temperatures	2
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Biochemical propensity mapping for structural and functional anatomy of importin α IBB domain	2
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Generation of Monosomy 21q Human iPS Cells by CRISPR/Cas9‐Mediated Interstitial Megabase Deletion	2
Effects of VEGFA and ANGPT2 Antibodies on the Activation of Microglia in the Early Stages of Streptozotocin‐Induced Pathogenesis of Diabetic Retinopathy	2
Identification and characterization of novel proteins associated with CHD4	2
Improved anti‐solid tumor response by humanized anti‐podoplanin chimeric antigen receptor transduced human cytotoxic T cells in an animal model	2
CD271 promotes proliferation and migration in bladder cancer	2
Overexpression of JNK‐associated leucine zipper protein induces chromosomal instability through interaction with dynein light intermediate chain 1	2
Turnover of EDEM1, an ERAD‐enhancing factor, is mediated by multiple degradation routes	2
Issue Information	2
The Depletion of TRAIP Results in the Retention of PCNA on Chromatin During Mitosis Leads to Inhibiting DNA Replication Initiation	2
Mouse transient receptor potential melastatin 2 (TRPM2) isoform 7 attenuates full‐length mouse TRPM2 activity through reductions in its expression by targeting it to ER‐associated d	2
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Improvement of Targeting Efficiency by Promoter Replacement of Markers in Integration Vectors	1
Ror1 promotes PPARα‐mediated fatty acid metabolism in astrocytes	1
Intranasal Sendai virus‐based SARS‐CoV‐2 vaccine using a mouse model	1
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ACAGT‐007a, an anti‐cancer compound that modulates ERK MAPK signaling, induces nuclear enrichment of phosphorylated ERK in T3M4 pancreatic cancer cells	1
Let's enjoy the heated “Debate Forum” (Gekiron Colosseo) at Makuhari Messe: A report of the 45th Annual Meeting of the Molecular Biology Society of Japan (MBSJ2022)	1
Cryo‐EM Structures of Native Chromatin Units From Human Cells	1
Meflin/ISLR is a marker of adipose stem and progenitor cells in mice and humans that suppresses white adipose tissue remodeling and fibrosis	1
Development of luminescent probes for real‐time detection of the CDK/PP2A balance during the cell cycle	1
Rcn1, the fission yeast homolog of human DSCR1, regulates arsenite tolerance independently from calcineurin	1
An N‐terminal and ankyrin repeat domain interactome of Shank3 identifies the protein complex with the splicing regulator Nono in mice	1
Nondomain biopolymers: Flexible molecular strategies to acquire biological functions	1
Ubiquitin proteasome system in circadian rhythm and sleep homeostasis: Lessons from Drosophila	1
Meta‐analysis of gonadal transcriptome provides novel insights into sex change mechanism across protogynous fishes	1
Reconstruction of artificial nuclei with nuclear import activity in living mouse oocytes	1
The repertoire of G‐protein‐coupled receptor variations in the Japanese population 54KJPN	1
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A zinc‐finger protein Moc3 functions as a transcription activator to promote RNAi‐dependent constitutive heterochromatin establishment in fission yeast	1

Heat shock‐induced heme oxygenase‐1 expression in a mouse hepatoma cell line is dependent on HSF1 and modified by NRF2 and BACH1	1
Mulberry fruit extract alleviates the intracellular amyloid‐β oligomer‐induced cognitive disturbance and oxidative stress in Alzheimer’s disease model mice	1
LincRNA‐p21 exon 1 expression correlates with Cdkn1a expression in vivo	1
Volume Index	1
Chimera RNA transcribed from integrated HPV18 genome with adjacent host genomic region promotes oncogenic gene expression through condensate formation	1
Generation of inducible mitophagy mice	1
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Structural basis of Irgb6 inactivation by Toxoplasma gondii through the phosphorylation of switch I	1
Transcription of damage‐induced RNA in Arabidopsis was frequently initiated from DSB loci within the genic regions	1
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Mutational analysis of Mei5, a subunit of Mei5‐Sae3 complex, in Dmc1‐mediated recombination during yeast meiosis	1
Gene trapping reveals a new transcriptionally active genome element: The chromosome‐specific clustered trap region	1
DNA double‐strand breaks regulate the cleavage‐independent release of Rec8‐cohesin during yeast meiosis	1
Staphylococcal superantigen‐like protein 3 triggers murine mast cell adhesion by binding to CD43 and augments mast cell activation	1
Hypoxia stabilizes the H2O2‐producing oxidase Nox4 in cardiomyocytes via suppressing autophagy‐related lysosomal degradation	1
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Corrigendum	1
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The 12th 3R + 3C International Symposium: A Meeting for Research Into DNA Replication, Repair, and Recombination, as Well as Chromatin, Chromosomes, and the Cell Cycle	1
Planar cell polarity protein Vangl2 and its interacting protein Ap2m1 regulate dendritic branching in cortical neurons	1
The Impact of the DNA Topoisomerase IIβ C‐Terminal Region on the Selective Degradation Induced by ICRF‐193 Treatment	1
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Potential of HMGB‐inhibitory oligodeoxynucleotide ISM ODN to neutrophil recruitment in mouse model of hepatitis	1
Chromosome‐dependent aneuploid formation in Spo11‐less meiosis	1
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Cryo‐EM Analysis of a Unique Subnucleosome Containing Centromere‐Specific Histone Variant CENP‐A	1
C9orf10/Ossa regulates the bone metastasis of established lung adenocarcinoma cell subline H322L‐BO4 in a mouse model	1
A nuclear pore complex‐associated regulation of SUMOylation in meiosis	1
Identification of responsible amino acid residues in staphylococcal superantigen‐like 12 for the activation of mast cells	1
Replacement of owl monkey centromere satellite by a newly evolved variant was a recent and rapid process	1
Functional Analysis of Adhesion GPCR Latrophilin 2 (ADGRL2) in MDA‐MB‐231 Human Breast Cancer Cells	1
Changes in brain proteasome dynamics associated with aging	1
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Subacute exposure to bisphenol F diglycidyl‐ether induces chronic dermatitis characterized by psoriasis‐like skin inflammation in mice	1
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Differential dependence on microbiota of IL‐23/IL‐22‐dependent gene expression between the small‐ and large‐intestinal epithelia	0
Mutations equivalent to Drosophila mago nashi mutants imply reduction of Magoh protein incorporation into exon junction complex	0
Switching defective/sucrose non‐fermenting chromatin remodeling complex coordinates meiotic gene activation via promoter remodeling and Meiosin activation in female germline	0
Metastatic potentials classified with hypoxia‐inducible factor 1 downstream genes in pan‐cancer cell lines	0
Roles of the second messenger c‐di‐GMP in bacteria: Focusing on the topics of flagellar regulation and Vibrio spp.	0
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Domain analysis of Drosophila Blimp‐1 reveals the importance of its repression function and instability in determining pupation timing	0
SET‐NUP214 and MLL cooperatively regulate the promoter activity of the HoxA10 gene	0
Role of Wnt5b‐Ror1 signaling in the proliferation of pancreatic ductal adenocarcinoma cells	0
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Attempts for deriving extended pluripotent stem cells from common marmoset embryonic stem cells	0
Acidic growth conditions stabilize the ribosomal RNA gene cluster and extend lifespan through noncoding transcription repression	0
Machine learning approach identifies prominent codons from different degenerate groups influencing gene expression in bacteria	0
Protease inhibitory activity of secretory leukocyte protease inhibitor ameliorates murine experimental colitis by protecting the intestinal epithelial barrier	0
The 36th International Mammalian Genome Conference: A scientific gathering under the cherry blossoms in Tsukuba	0
Aging‐associated reduction of chromosomal histones in mammalian oocytes	0
Fertilizable Rat Sperm Is Generated in Mice Using Blastocyst Complementation: An Efficient Method for Producing Rats With ES Cell Traits	0
Inhibition of lipopolysaccharide‐induced inflammatory responses by 1′‐acetoxychavicol acetate	0
Visualization of the landscape of the read alignment shape of ATAC‐seq data using Hellinger distance metric	0
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Genetic inhibition of collapsin response mediator protein‐2 phosphorylation ameliorates retinal ganglion cell death in normal‐tension glaucoma models	0
Machine learning extracts oncogenic‐specific γ‐H2AX foci formation pattern upon genotoxic stress	0
Leukemia inhibitory factor shortens primary cilia by upregulating C‐C motif chemokine 2 in human neural stem/progenitor cells	0
Dorsal–lateral clock neurons modulate consolidation and maintenance of long‐term memory in Drosophila	0
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Histone variant H2A.Z plays multiple roles in the maintenance of heterochromatin integrity	0
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RNA–DNA hybrids on protein coding genes are stabilized by loss of RNase H and are associated with DNA damages during S‐phase in fission yeast	0
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Female‐specific mechanisms of meiotic initiation and progression in mammalian oocyte development	0
Alterations of ATG4A and LC3B in neurons derived from Alzheimer's disease patients	0
Heterochromatin Protein Swi6 Suppresses Aberrant Gene Conversion at mat Loci by Adjusting the Balance Between the Two Pathways of Swi2 and Rad57	0
Roles of Pbp1, Mkt1, and Dhh1 in the regulation of gene expression in the medium containing non‐fermentative carbon sources	0
Roles of linker region flanked by transmembrane and peptidoglycan binding region of PomB in energy conversion of the Vibrio flagellar motor	0
Yeast Tor complex 1 phosphorylates eIF4E‐binding protein, Caf20	0
Potential negative effect of total parenteral nutrition on the human circadian clock	0
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Transcriptional features of low‐grade neuroepithelial tumors with the BRAF V600E mutation associated with epileptogenicity	0
Evolution of the Cdk4/6–Cdkn2 system in invertebrates	0
CREG1 improves diet‐induced obesity via uncoupling protein 1‐dependent manner in mice	0
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Evolutionary features of ligands and their receptors via protein–protein interactions and essentiality in primates	0
The role of Zfp352 in the regulation of transient expression of 2‐cell specific genes in mouse embryonic stem cells	0
An Attention‐Based Deep Neural Network Model to Detect Cis‐Regulatory Elements at the Single‐Cell Level From Multi‐Omics Data	0
Wnt10b knockdown promotes UCP1 expression in brown adipose tissue in mice	0
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The optimized priming effect of FGF‐1 and FGF‐2 enhances preadipocyte lineage commitment in human adipose‐derived mesenchymal stem cells	0
Aqueous Two‐Phase System (ATPS)‐Based Spore Isolation in Schizosaccharomyces pombe Requires Isp3‐Dependent Surface Hydrophobicity	0
Accelerated BDNF expression in visceral white adipose tissues following high‐fat diet feeding in mice	0
Formation of multiple flagella caused by a mutation of the flagellar rotor protein FliM in Vibrio alginolyticus	0
Dissection of Behavioral Components and the Role of Omega/Delta Turns for the Chemotaxis of C. elegans	0
The HMG‐box module in FACT is critical for suppressing epigenetic variegation of heterochromatin in fission yeast	0
Identification of TEKTIN1‐expressing multiciliated cells during spontaneous differentiation of non‐human primate embryonic stem cells	0
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RAD18‐ and BRCA1‐dependent pathways promote cellular tolerance to the nucleoside analog ganciclovir	0