Genes to Cells

Article	Citations
	51
Issue Information	31
HIF1α Plays a Crucial Role in the Development of TFE3–Rearranged Renal Cell Carcinoma by Orchestrating a Metabolic Shift Toward Fatty Acid Synthesis	22
Correction to “The Protein Kinase aPKC as Well as the Small GTPases RhoA and Cdc42 Regulates Neutrophil Chemotaxis Partly by Recruiting the ROCK Kinase to the Leading	18
Luciferase‐based quantification of membrane fusion induced by SARS‐CoV‐2 S protein	16
The 33rd International Conference on Arabidopsis Research (ICAR2023)	15
Dynamics of actomyosin filaments in the contractile ring revealed by ultrastructural analysis	13
GTP‐dependent regulation of heterochromatin fluctuations at subtelomeric regions in Saccharomyces cerevisiae	12
“The 10th International MDM2 Workshop”: Opening up new avenues for MDM2 and p53 research, the First International MDM2 Workshop in Asia	11
A Transition From Interindividual Uniformity to Diversity in Appearance and Transcriptional Features at Midlife in Caenorhabditis elegans	11
Histone H3.3 chaperone HIRA renders stress‐responsive genes poised for prospective lethal stresses in acquired tolerance	11
CdsA, a CDP‐diacylglycerol synthase involved in phospholipid and glycolipid MPIase biosynthesis, possesses multiple initiation codons	10
	9
DNMT1 can induce primary germ layer differentiation through de novo DNA methylation	9
Cellular and molecular mechanisms of asymmetric stem cell division in tissue homeostasis	9
Issue Information	9
A novel transcription factor Sdr1 involving sulfur depletion response in fission yeast	9
A simple, rapid, and efficient method for generating multigene‐knockout culture cells by the CRISPR/Cas9 system	9
Neonatal Fc receptor is a functional receptor for classical human astrovirus	9
The iron chelator deferriferrichrysin induces paraptosis via extracellular signal‐related kinase activation in cancer cells	8
Issue Information	8
The HAT Inhibitor ISOX‐DUAL Diminishes Ischemic Areas in a Mouse Model of Oxygen‐Induced Retinopathy	8
Issue Information	8
Daidara: A gigantic Gypsy LTR retrotransposon lineage in the springtail Allacma fusca genome	8
Notch signaling pathway suppresses mRNA expression of hexokinase 2 under nutrient‐poor conditions in U87‐MG glioma cells	7

T‐cell receptor repertoire analysis of CD4‐positive T cells from blood and an affected organ in an autoimmune mouse model	7
Transcriptional Regulation of the Interferon Alpha‐Inducible Protein‐27 Like 2b by the Peroxisome Proliferator‐Activated Receptor γ in Fatty Liver Disease	7
	7
ATP2B4 is an essential gene for epidermal growth factor‐induced macropinocytosis in A431 cells	7
Issue Information	7
N‐(3,4‐dimethoxyphenethyl)‐6‐methyl‐2,3,4,9‐tetrahydro‐1H‐carbazol‐1‐amine inhibits bladder cancer progression by suppressing YAP1/TAZ	7
Issue Information	7
	7
TOB Proteins Repress Translation via the CCR4–NOT Deadenylase Complex Independent of Deadenylation	7
Maternal epigenetic factors in embryonic and postnatal development	6
Pathogen challenge in Arabidopsis cotyledons induces enhanced disease resistance at newly formed rosette leaves via sustained upregulation of WRKY70	6
N‐terminal Ago‐binding domain of GW182 contains a tryptophan‐rich region that confer binding to the CCR4–NOT complex	6
BACH1 regulates erythrophagocytosis and iron‐recycling in β‐thalassemia	6
Identification of genes contributing to attenuation of rat model of galactose‐induced cataract by pyruvate	6
TIE1 Promotes Primary Tumor Growth by Inhibiting Apoptosis and Activating the AKT ‐ p70S6K	6
Brain‐derived neurotrophic factor (BDNF) downregulates mRNA levels of suppressor of cancer cell invasion (SCAI) variants in cortical neurons	6
TCR Repertoire Analysis Quantifies Effect of Irradiation on Homeostasis of iNKT Cell Development in the Thymus of Mice	5
Correction to “An Upstream RUN X3 Enhancer, eR	5
Long Noncoding RNA CCDC26 Interacts With Vimentin, HNRNPC, CBX1, and CBX5 Proteins in Multiple Intracellular Compartments of Myeloid Leukemia Cells	5
Isolation of planarian viable cells using fluorescence‐activated cell sorting for advancing single‐cell transcriptome analysis	5
Squamous cell carcinoma‐derived G‐CSF promotes tumor growth and metastasis in mice through neutrophil recruitment and tumor cell proliferation, associated with poor prognosis of the patient	5
The scaffold protein IQGAP1 promotes reorientation of epithelial cell polarity at the two‐cell stage for cystogenesis	5
WDR74‐Mediated Ribosome Biogenesis and Proteome Dynamics During Mouse Preimplantation Development	5
	5
Protein degradation by a component of the chaperonin‐linked protease ClpP	5
Mrc1Claspin is essential for heterochromatin maintenance in Schizosaccharomyces pombe	5
Interferon‐Dependent Expression of the Human STAT1 Gene Requires a Distal Regulatory Region Located Approximately 6 kb Upstream for Its Autoregulatory System	5
Megakaryocyte maturation involves activation of the adaptive unfolded protein response	5
	5
Lumicrine signaling: Extracellular regulation of sperm maturation in the male reproductive tract lumen	5
Fission yeast Ish1 and Les1 interact with each other in the lumen of the nuclear envelope	4
	4
	4
Pkd2, mutations linking to autosomal dominant polycystic kidney disease, localizes to the endoplasmic reticulum and regulates calcium signaling in fission yeast	4
Issue Information	4
Image Analysis Characterizes Phenotypic Variation in the Growth of Mushroom‐Forming Fungus Schizophyllum commune	4
Elimination of physiological senescent cutaneous cells in a novel p16‐dependent senolytic mouse model impacts lipid metabolism in skin aging	4
Regulation of Gut Starvation Responses Through DrosophilaNP3253 Neurons	4
Bcat1 is controlled by Tsc2/mTORC1 pathway at expression levels and its deficiency together with Bcat2 inactivation suppresses the growth of a Tsc2−/− tumor cel	4
Lobe‐Less, a Long Noncoding RNA That Regulates Drosophila	4
Lineage tracing using Wnt2b‐2A‐CreERT2 knock‐in mice reveals the contributions of Wnt2b‐expressing cells to novel subpopulations of mesothelial/epicardial cell lineages during mouse deve	4
Chromosomal rearrangements associated with SMC5/6 deficiency in DNA replication	4
Meeting report: AT workshop 2023—A platform for discussing cutting‐edge science in DNA damage signaling, repair, and human disorders	4
Issue Information	4
Glucolipids and lipoteichoic acids affect the activity of SigI, an alternative sigma factor, and WalKR, an essential two‐component system, in Bacillus subtilis	4
Defects in the H3t Gene Cause an Increase in Leydig Cells With Impaired Spermatogenesis in Mice	4
XRCC1 counteracts poly(ADP ribose)polymerase (PARP) poisons, olaparib and talazoparib, and a clinical alkylating agent, temozolomide, by promoting the removal of trapped PARP1 fr	4
The structure–function analysis of Obg‐like GTPase proteins along the evolutionary tree from bacteria to humans	4
Long‐term sorbitol consumption affects the hippocampus and alters cognitive function in aged mice	4
INT6/eIF3e represses E‐cadherin expression through HIF2α in lung carcinoma A549 cells	4

	4
Multiple pathways and independent functional pools in insulin granule exocytosis	4
Swimming Into Future Breakthroughs From Kyoto, Japan: Report of the 18th International Zebrafish Conference (IZFC2024)	3
The histone H3K36 demethylase Fbxl11 plays pivotal roles in the development of retinal late‐born cell types	3
Rapamycin Abrogates Aggregation of Human α‐Synuclein Expressed in Fission Yeast via an Autophagy‐Independent Mechanism	3
The 6th international cell senescence association conference	3
Processing of DNA Topoisomerase II – DNA –Prote	3
Correction to “C‐Terminus of the Sgf73 Subunit of SAGA and SLIK is Important for Retention in the	3
Correction to “The Meeting Report on the Fifth International Conference of the Chromosomal SMC Complexes”	3
Loss of a single Zn finger, but not that of two Zn fingers, of GATA3 drives skin inflammation	3
Premature gray hair development in the interbrow region owing to the loss of maxillary first molars in young mice	3
Severe ethanol stress inhibits yeast proteasome activity at moderate temperatures but not at low temperatures	3
Turnover of EDEM1, an ERAD‐enhancing factor, is mediated by multiple degradation routes	3
Corrigendum	3
The Depletion of TRAIP Results in the Retention of PCNA on Chromatin During Mitosis Leads to Inhib	3
Correction to ‘The role of transcriptional coactivator TRAP220 in myelomonocytic differentiation’	3
Epsin 3 Promotes Cellular Senescence Through Reactive Oxygen Species‐Mediated Induction of DNA Damage	3
Mouse transient receptor potential melastatin 2 (TRPM2) isoform 7 attenuates full‐length mouse TRPM2 activity through reductions in its expression by targeting it to ER‐associated d	3
RNF213‐Dependent EGFR and HER2 Activation Regulates Specific Downstream Signaling Pathways in Human Cancer Cells	3
Functional Differences Between SIRPα Splice Isoforms	3
Absence of ULK1 decreases AMPK activity in the kidney, leading to chronic kidney disease progression	3
Epithelial miR‐215 negatively modulates Th17‐dominant inflammation by inhibiting CXCL12 production in the small intestine	3
Generation of Odorant Receptor‐QF2 Knock‐In Drivers for Improved Analysis of Olfactory Circuits in Drosophila	3
Quantitative Imaging Analysis of Internal Structural Complexity in Mouse Heart Organoids; Comparison to Mouse Embryonic Hearts	3
The TAP / NXF1 ‐Binding Region of HuD Is Requir	3
CD41+ extracellular vesicles produced by avian thrombocytes contain microRNAs	3
	3
	3
Issue Information	2
Advantages of Mutant Generation by Genome Rearrangements of Non‐Conventional Yeast via Direct Nuclease Transfection	2
Knockdown of Cav2.2 Calcium Channel in Macrophages Aggravates Colitis Induced by Dextran Sodium Sulfate	2
Analysis of the responsiveness to antiandrogens in multiple breast cancer cell lines	2
Mapping of the regions implicated in nuclear localization of multi‐functional DNA repair endonuclease XPF‐ERCC1	2
Issue Information	2
	2
Characteristics of Global Methylation Changes in F1 Mice Sperm DNA Induced by Gestational Arsenic Exposure Are Re‐Established in F2 Somatic Cells but Not in F2	2
Search for putative gene regulatory motifs in CAHS3, linked to anhydrobiosis in a tardigrade Ramazzottius varieornatus, in vivo and in silico	2
Activation of Evolutionarily Young Endogenous Retroviruses Is Implicated in COVID‐19 Immunopathology	2
Regulation of constant cell elongation and Sfm pili synthesis in Escherichia coli via two active forms of FimZ orphan response regulator	2
Improved anti‐solid tumor response by humanized anti‐podoplanin chimeric antigen receptor transduced human cytotoxic T cells in an animal model	2
Correction to “Transcriptional Regulation of the Interferon Alpha‐Inducible Protein‐27 Like 2b by the Peroxisome Proliferator‐Activated Receptor γ in Fatty Liver Disease”	2
	2
Cryo‐EM Structures of Native Chromatin Units From Human Cells	2
Lineage tracing identifies in vitro microglia‐to‐neuron conversion by NeuroD1 expression	2
GM‐CSF‐producing CCR2+CCR6+ Th17 cells are pathogenic in dextran sodium sulfate‐induced colitis model in mice	2
Extracellular α‐synuclein impairs sphingosine 1‐phosphate receptor type 3 (S1PR3)‐regulated lysosomal delivery of cathepsin D in HeLa cells	2
	2
	2
The interaction between the import carrier Hikeshi and HSP70 is modulated by heat, facilitating the nuclear import of HSP70 under heat stress conditions	2
Iron‐Dependent JMJD1A‐Mediated Demethylation of H3K9me2 Regulates Gene Expression During Adipogenesis in a Spatial Genome Organization‐Dependent Manner	2
Issue Information	2
Ectopic expression of matrix metalloproteinases and filopodia extension via JNK activation are involved in the invasion of blood tumor cells in Drosophila mxc mutant	2
Effect of Retinal on Dictyostelium Cells During Development	2
Intranasal Sendai virus‐based SARS‐CoV‐2 vaccine using a mouse model	2
Issue Information	2
Issue Information	2
The hibernation promoting factor of Betaproteobacteria Comamonas testosteroni cannot induce 100S ribosome formation but stabilizes 70S ribosomal particles	2
Egg components reverse the atrophy induced by injury in skeletal muscles	2
Dilp8 and its candidate receptor, Drl, are involved in the transdetermination of the Drosophila imaginal disc	2
Interleukin‐3‐dependent potentiation of IgE responsiveness in mouse basophils	2
Overexpression of JNK‐associated leucine zipper protein induces chromosomal instability through interaction with dynein light intermediate chain 1	2
	2
Isoliquiritigenin inhibits NLRP3 inflammasome activation with CAPS mutations by suppressing caspase‐1 activation and mutated NLRP3 aggregation	2
Biochemical propensity mapping for structural and functional anatomy of importin α IBB domain	2
CD271 promotes proliferation and migration in bladder cancer	2
Generation of Monosomy 21q Human iPS Cells by CRISPR/Cas9‐Mediated Interstitial Megabase Deletion	2
Effects of VEGFA and ANGPT2 Antibodies on the Activation of Microglia in the Early Stages of Streptozotocin‐Induced Pathogenesis of Diabetic Retinopathy	2
Issue Information	2
Combinatorial Analyses of Pre‐ mRNA Splicing‐Defective Mutants Reveal Differential Quantitative Requirements for Shelterin in Distinct Telomere Funct	2
Machine Learning Extracts Radiation Resistant‐Specific EdU Fluorescence Pattern in Cancer Cells	2
Issue Information	1
The Impact of the DNA Topoisomerase IIβ C‐Terminal Region on the Selective Degradation Induced by ICRF‐193 Treatment	1
DNA double‐strand breaks regulate the cleavage‐independent release of Rec8‐cohesin during yeast meiosis	1
An N‐terminal and ankyrin repeat domain interactome of Shank3 identifies the protein complex with the splicing regulator Nono in mice	1
Mutational analysis of Mei5, a subunit of Mei5‐Sae3 complex, in Dmc1‐mediated recombination during yeast meiosis	1
The 12th 3R + 3C International Symposium: A Meeting for Research Into DNA Replication, Repair, and Recombination, as Well as Chromatin, Chromosomes, and the Cell Cycle	1
Publishing in the Open Access and Open Science era	1
Generation of inducible mitophagy mice	1
Transcription of damage‐induced RNA in Arabidopsis was frequently initiated from DSB loci within the genic regions	1
Marsupial genome analysis suggests that satellite DNA formation from walb endogenous retrovirus is an event specific to the red‐necked wallaby	1

Potential of HMGB‐inhibitory oligodeoxynucleotide ISM ODN to neutrophil recruitment in mouse model of hepatitis	1
	1
Identification of responsible amino acid residues in staphylococcal superantigen‐like 12 for the activation of mast cells	1
	1
Talk Until You Drop: Lively Discussions at the 7th International Conference on Plant Vascular Biology 2025 in Osaka	1
Staphylococcal superantigen‐like protein 3 triggers murine mast cell adhesion by binding to CD43 and augments mast cell activation	1
Meflin/ISLR is a marker of adipose stem and progenitor cells in mice and humans that suppresses white adipose tissue remodeling and fibrosis	1
Chromosome‐dependent aneuploid formation in Spo11‐less meiosis	1
Structural basis of Irgb6 inactivation by Toxoplasma gondii through the phosphorylation of switch I	1
Chimera RNA transcribed from integrated HPV18 genome with adjacent host genomic region promotes oncogenic gene expression through condensate formation	1
Reconstruction of artificial nuclei with nuclear import activity in living mouse oocytes	1
A zinc‐finger protein Moc3 functions as a transcription activator to promote RNAi‐dependent constitutive heterochromatin establishment in fission yeast	1
Issue Information	1
Subacute exposure to bisphenol F diglycidyl‐ether induces chronic dermatitis characterized by psoriasis‐like skin inflammation in mice	1
Ubiquitin proteasome system in circadian rhythm and sleep homeostasis: Lessons from Drosophila	1
Hypoxia stabilizes the H2O2‐producing oxidase Nox4 in cardiomyocytes via suppressing autophagy‐related lysosomal degradation	1
	1
The cytosolic lncRNAdutA affects STATa signaling and developmental commitment in Dictyostelium	1
C9orf10/Ossa regulates the bone metastasis of established lung adenocarcinoma cell subline H322L‐BO4 in a mouse model	1
Issue Information	1
	1
Impacts of methotrexate on survival, dendrite development, and synapse formation of cortical neurons	1
Heat shock‐induced heme oxygenase‐1 expression in a mouse hepatoma cell line is dependent on HSF1 and modified by NRF2 and BACH1	1
Let's enjoy the heated “Debate Forum” (Gekiron Colosseo) at Makuhari Messe: A report of the 45th Annual Meeting of the Molecular Biology Society of Japan (MBSJ2022)	1
Cryo‐EM Analysis of a Unique Subnucleosome Containing Centromere‐Specific Histone Variant CENP‐A	1
ACAGT‐007a, an anti‐cancer compound that modulates ERK MAPK signaling, induces nuclear enrichment of phosphorylated ERK in T3M4 pancreatic cancer cells	1
Functional Analysis of Adhesion GPCR Latrophilin 2 (ADGRL2) in MDA‐MB‐231 Human Breast Cancer Cells	1
Ror1 promotes PPARα‐mediated fatty acid metabolism in astrocytes	1
A nuclear pore complex‐associated regulation of SUMOylation in meiosis	1
Development of luminescent probes for real‐time detection of the CDK/PP2A balance during the cell cycle	1
Rcn1, the fission yeast homolog of human DSCR1, regulates arsenite tolerance independently from calcineurin	1
Behavioral screening of sleep‐promoting effects of human intestinal and food‐associated bacteria on Drosophila melanogaster	1
The repertoire of G‐protein‐coupled receptor variations in the Japanese population 54KJPN	1
Changes in brain proteasome dynamics associated with aging	1
Nondomain biopolymers: Flexible molecular strategies to acquire biological functions	1
	1
	1
	1
Improvement of Targeting Efficiency by Promoter Replacement of Markers in Integration Vectors	1
	1
	0
Identification of TEKTIN1‐expressing multiciliated cells during spontaneous differentiation of non‐human primate embryonic stem cells	0
Roles of the second messenger c‐di‐GMP in bacteria: Focusing on the topics of flagellar regulation and Vibrio spp.	0
The optimized priming effect of FGF‐1 and FGF‐2 enhances preadipocyte lineage commitment in human adipose‐derived mesenchymal stem cells	0
Female‐specific mechanisms of meiotic initiation and progression in mammalian oocyte development	0
Quick and affordable DNA cloning by reconstitution of Seamless Ligation Cloning Extract using defined factors	0
CREG1 improves diet‐induced obesity via uncoupling protein 1‐dependent manner in mice	0
HOXB7 induces STAT3‐mediated transformation and lung metastasis in immortalized mammary gland NMuMG cells	0
Inhibition of lipopolysaccharide‐induced inflammatory responses by 1′‐acetoxychavicol acetate	0
	0
Fertilizable Rat Sperm Is Generated in Mice Using Blastocyst Complementation: An Efficient Method for Producing Rats With ES Cell Traits	0
Evolutionary features of ligands and their receptors via protein–protein interactions and essentiality in primates	0
Mutations equivalent to Drosophila mago nashi mutants imply reduction of Magoh protein incorporation into exon junction complex	0
Issue Information	0
Machine learning extracts oncogenic‐specific γ‐H2AX foci formation pattern upon genotoxic stress	0
Visualization of the landscape of the read alignment shape of ATAC‐seq data using Hellinger distance metric	0
miR ‐205‐5p Promotes Hepatic Fat Accumulation as a Downstream Effector of PPARγ Signaling	0
Domain analysis of Drosophila Blimp‐1 reveals the importance of its repression function and instability in determining pupation timing	0
Alterations of ATG4A and LC3B in neurons derived from Alzheimer's disease patients	0
Issue Information	0
Formation of multiple flagella caused by a mutation of the flagellar rotor protein FliM in Vibrio alginolyticus	0
Evolution of the Cdk4/6–Cdkn2 system in invertebrates	0
Wnt10b knockdown promotes UCP1 expression in brown adipose tissue in mice	0
Accelerated BDNF expression in visceral white adipose tissues following high‐fat diet feeding in mice	0
Dissection of Behavioral Components and the Role of Omega/Delta Turns for the Chemotaxis of C. elegans	0
Genetic inhibition of collapsin response mediator protein‐2 phosphorylation ameliorates retinal ganglion cell death in normal‐tension glaucoma models	0
Issue Information	0
Switching defective/sucrose non‐fermenting chromatin remodeling complex coordinates meiotic gene activation via promoter remodeling and Meiosin activation in female germline	0
Potential negative effect of total parenteral nutrition on the human circadian clock	0
Transcriptomic Regulation by Astrocytic m6A Methylation in the mPFC	0
Leukemia inhibitory factor shortens primary cilia by upregulating C‐C motif chemokine 2 in human neural stem/progenitor cells	0
Dorsal–lateral clock neurons modulate consolidation and maintenance of long‐term memory in Drosophila	0
Roles of linker region flanked by transmembrane and peptidoglycan binding region of PomB in energy conversion of the Vibrio flagellar motor	0
	0
Transcriptional features of low‐grade neuroepithelial tumors with the BRAF V600E mutation associated with epileptogenicity	0
	0
Issue Information	0
An Attention‐Based Deep Neural Network Model to Detect Cis‐Regulatory Elements at the Single‐Cell Level From Multi‐Omics Data	0
	0
The Meeting Report on the VIIth International Workshop on SOX Transcription Factors	0
RAD18‐ and BRCA1‐dependent pathways promote cellular tolerance to the nucleoside analog ganciclovir	0
Machine learning approach identifies prominent codons from different degenerate groups influencing gene expression in bacteria	0
Acidic growth conditions stabilize the ribosomal RNA gene cluster and extend lifespan through noncoding transcription repression	0
Attempts for deriving extended pluripotent stem cells from common marmoset embryonic stem cells	0
Aging‐associated reduction of chromosomal histones in mammalian oocytes	0
RNA–DNA hybrids on protein coding genes are stabilized by loss of RNase H and are associated with DNA damages during S‐phase in fission yeast	0
Differential dependence on microbiota of IL‐23/IL‐22‐dependent gene expression between the small‐ and large‐intestinal epithelia	0
Aqueous Two‐Phase System (ATPS)‐Based Spore Isolation in Schizosaccharomyces pombe Requires Isp3‐Dependent Surface Hydrophobicity	0
Issue Information	0
Corrigendum	0
	0
Role of Wnt5b‐Ror1 signaling in the proliferation of pancreatic ductal adenocarcinoma cells	0
Metastatic potentials classified with hypoxia‐inducible factor 1 downstream genes in pan‐cancer cell lines	0
The role of Zfp352 in the regulation of transient expression of 2‐cell specific genes in mouse embryonic stem cells	0
Stimulatory role of nectin‐4 and p95‐ErbB2 in multilayered T47D cell proliferation	0