Genes to Cells

Article	Citations
ZomB is essential for chemotaxis of Vibrio alginolyticus by the rotational direction control of the polar flagellar motor	39
GTP‐dependent regulation of heterochromatin fluctuations at subtelomeric regions in Saccharomyces cerevisiae	23
Issue Information	23
Lineage tracing using Wnt2b‐2A‐CreERT2 knock‐in mice reveals the contributions of Wnt2b‐expressing cells to novel subpopulations of mesothelial/epicardial cell lineages during mouse deve	20
	17
GM‐CSF‐producing CCR2+CCR6+ Th17 cells are pathogenic in dextran sodium sulfate‐induced colitis model in mice	15
	15
Meiotic DNA double‐strand break‐independent role of protein phosphatase 4 in Hop1 assembly to promote meiotic chromosome axis formation in budding yeast	13
Issue Information	13
Pbp1 mediates the aberrant expression of genes involved in growth defect of ccr4∆ and pop2∆ mutants in yeast Saccharomyces cerevisiae	12
Issue Information	12
A simple, rapid, and efficient method for generating multigene‐knockout culture cells by the CRISPR/Cas9 system	12
Meeting report: AT workshop 2023—A platform for discussing cutting‐edge science in DNA damage signaling, repair, and human disorders	10
	10
	10
Generating a new mouse model for nuclear PTEN deficiency by a single K13R mutation	10
	9
Pkd2, mutations linking to autosomal dominant polycystic kidney disease, localizes to the endoplasmic reticulum and regulates calcium signaling in fission yeast	9
CdsA, a CDP‐diacylglycerol synthase involved in phospholipid and glycolipid MPIase biosynthesis, possesses multiple initiation codons	9
	9
Interleukin‐3‐dependent potentiation of IgE responsiveness in mouse basophils	9
Issue Information	8
	8
The CRK14 gene encoding a cysteine‐rich receptor‐like kinase is implicated in the regulation of global proliferative arrest in Arabidopsis thaliana	8
Histone H3.3 chaperone HIRA renders stress‐responsive genes poised for prospective lethal stresses in acquired tolerance	8

Dynamics of actomyosin filaments in the contractile ring revealed by ultrastructural analysis	7
Dorsal–lateral clock neurons modulate consolidation and maintenance of long‐term memory in Drosophila	7
Issue Information	7
	7
Issue Information	7
“The 10th International MDM2 Workshop”: Opening up new avenues for MDM2 and p53 research, the First International MDM2 Workshop in Asia	7
Egg components reverse the atrophy induced by injury in skeletal muscles	7
The 33rd International Conference on Arabidopsis Research (ICAR2023)	6
INT6/eIF3e represses E‐cadherin expression through HIF2α in lung carcinoma A549 cells	6
DNMT1 can induce primary germ layer differentiation through de novo DNA methylation	6
	6
Cdc7 kinase is required for postnatal brain development	6
Mutations equivalent to Drosophila mago nashi mutants imply reduction of Magoh protein incorporation into exon junction complex	6
Metastatic potentials classified with hypoxia‐inducible factor 1 downstream genes in pan‐cancer cell lines	5
HIF1α Plays a Crucial Role in the Development of TFE3–Rearranged Renal Cell Carcinoma by Orchestrating a Metabolic Shift Toward Fatty Acid Synthesis	5
The structure–function analysis of Obg‐like GTPase proteins along the evolutionary tree from bacteria to humans	5
Long‐term sorbitol consumption affects the hippocampus and alters cognitive function in aged mice	5
SRPKs Homolog Dsk1 Regulates Homologous Recombination Repair in Schizosaccharomyces pombe	5
A Transition From Interindividual Uniformity to Diversity in Appearance and Transcriptional Features at Midlife in Caenorhabditis elegans	5
Biochemical propensity mapping for structural and functional anatomy of importin α IBB domain	5
Dose‐dependent effects of histone methyltransferase NSD2 on site‐specific double‐strand break repair	5
Sulforaphane Induces Transient Reactive Oxygen Species‐Mediated DNA Damage in HeLa Cells	5
A novel transcription factor Sdr1 involving sulfur depletion response in fission yeast	5
Clover: An unbiased method for prioritizing differentially expressed genes using a data‐driven approach	5
Antibiotic effects on gut microbiota modulate diet‐induced metabolic dysfunction‐associated steatohepatitis development in C57BL/6 mice	5
Chromatin remodeling in replication‐uncoupled maintenance DNA methylation and chromosome stability: Insights from ICF syndrome studies	4
Identification and characterization of an enhancer element regulating expression of Cdkn1c (p57 gene)	4
Correction to “The Protein Kinase aPKC as Well as the Small GTPases RhoA and Cdc42 Regulates Neutrophil Chemotaxis Partly by Recruiting the ROCK Kinase to the Leading	4
	4
Luciferase‐based quantification of membrane fusion induced by SARS‐CoV‐2 S protein	4
Corrigendum	4
Chromosomal rearrangements associated with SMC5/6 deficiency in DNA replication	4
Neonatal Fc receptor is a functional receptor for classical human astrovirus	4
Evolution of the Cdk4/6–Cdkn2 system in invertebrates	4
Growth and division mode plasticity is dependent on cell density in marine‐derived black yeasts	4
Cellular and molecular mechanisms of asymmetric stem cell division in tissue homeostasis	4
Vacuolar Sts1 Degradation‐Induced Cytoplasmic Proteasome Translocation Restores Cell Proliferation	4
	4
Mapping of the regions implicated in nuclear localization of multi‐functional DNA repair endonuclease XPF‐ERCC1	4
Machine learning extracts oncogenic‐specific γ‐H2AX foci formation pattern upon genotoxic stress	4
Glioma cells remotely promote erythropoiesis as a self‐expanding strategy of cancer stem cells	3
Mulberry fruit extract alleviates the intracellular amyloid‐β oligomer‐induced cognitive disturbance and oxidative stress in Alzheimer’s disease model mice	3
	3
Cryo‐EM structure and biochemical analyses of the nucleosome containing the cancer‐associated histone H3 mutation E97K	3
Regulation mechanisms of CARMA1–Bcl10–MALT1 complex assembly inferred from the analysis of TRAF6‐deficient cells	3
	3
Issue Information	3
Amphibian thrombocyte‐derived extracellular vesicles, including microRNAs, induce angiogenesis‐related genes in endothelial cells	3
Issue Information	3
Mitochondrial dynamics and degradation in the oleaginous yeast Lipomyces starkeyi	3

Issue Information	3
Differential dependence on microbiota of IL‐23/IL‐22‐dependent gene expression between the small‐ and large‐intestinal epithelia	3
	3
Vrk2 deficiency elicits aggressive behavior in female zebrafish	3
The iron chelator deferriferrichrysin induces paraptosis via extracellular signal‐related kinase activation in cancer cells	3
Transcriptional regulation of adipogenin expression in liver steatosis by hepatic peroxisome proliferator‐activated receptor gamma	3
Chimera RNA transcribed from integrated HPV18 genome with adjacent host genomic region promotes oncogenic gene expression through condensate formation	3
Single‐cell dissection reveals the role of DNA damage response patterns in tumor microenvironment components contributing to colorectal cancer progression and immunotherapy	3
The toxicity of dysregulated Plk1 activity revealed by its suppressor mutations	3
N‐(3,4‐dimethoxyphenethyl)‐6‐methyl‐2,3,4,9‐tetrahydro‐1H‐carbazol‐1‐amine inhibits bladder cancer progression by suppressing YAP1/TAZ	3
Daidara: A gigantic Gypsy LTR retrotransposon lineage in the springtail Allacma fusca genome	3
MiR‐382‐5p suppresses M1 macrophage polarization and inflammatory response in response to bronchopulmonary dysplasia through targeting CDK8: Involving inhibition of STAT1 pathway	3
The structure of POMGNT2 provides new insights into the mechanism to determine the functional O‐mannosylation site on α‐dystroglycan	3
Unbiased prediction of off‐target sites in genome‐edited rice using SITE‐Seq analysis on a web‐based platform	2
The ribonuclease domain function is dispensable for SLFN11 to mediate cell fate decision during replication stress response	2
Ubiquitination‐dependent and ‐independent repression of target genes by SETDB1 reveal a context‐dependent role for its methyltransferase activity during adipogenesis	2
	2
Potential negative effect of total parenteral nutrition on the human circadian clock	2
The fly brain lands in Tokyo: A report on the 3rd Asia Pacific Drosophila Neurobiology Conference	2
Correction to ‘The role of transcriptional coactivator TRAP220 in myelomonocytic differentiation’	2
Stimulatory role of nectin‐4 and p95‐ErbB2 in multilayered T47D cell proliferation	2
Potential of HMGB‐inhibitory oligodeoxynucleotide ISM ODN to neutrophil recruitment in mouse model of hepatitis	2
Wnt 2022 EMBO | the Company of Biologists workshop and Yamada conference	2
Intranasal Sendai virus‐based SARS‐CoV‐2 vaccine using a mouse model	2
Meflin defines mesenchymal stem cells and/or their early progenitors with multilineage differentiation capacity	2
	2
Immunotherapy‐induced reprogramming of cancer‐associated fibroblasts can promote tumor progression	2
Autonomous and intercellular chemokine signaling elicited from mesenchymal stem cells regulates migration of undifferentiated gastric cancer cells	2
ACAGT‐007a, an anti‐cancer compound that modulates ERK MAPK signaling, induces nuclear enrichment of phosphorylated ERK in T3M4 pancreatic cancer cells	2
Issue Information	2
Issue Information	2
EGL‐4/PKG regulates the role of an interneuron in a chemotaxis circuit of C. elegans through mediating integration of sensory signals	2
	2
Inhibition of lipopolysaccharide‐induced inflammatory responses by 1′‐acetoxychavicol acetate	2
Issue Information	2
Differential effects of the formin inhibitor SMIFH2 on contractility and Ca2+ handling in frog and mouse cardiomyocytes	2
Issue Information	2
IMPDH2 forms spots at branching sites and distal ends of astrocyte stem processes	1
Single‐Cell RNA‐Sequencing of Zebrafish Olfactory Epithelium Identifies Odor‐Responsive Candidate Olfactory Receptors	1
Severe ethanol stress inhibits yeast proteasome activity at moderate temperatures but not at low temperatures	1
The 6th international cell senescence association conference	1
Maternal epigenetic factors in embryonic and postnatal development	1
Epithelial miR‐215 negatively modulates Th17‐dominant inflammation by inhibiting CXCL12 production in the small intestine	1
CD41+ extracellular vesicles produced by avian thrombocytes contain microRNAs	1
	1
Issue Information	1
	1
Analysis method of cellular stress caused by intermediate dose‐rate irradiation using a cell lysate array technique	1
Physiological concentrations of glucocorticoids induce pathological DNA double‐strand breaks	1
Issue Information	1
Mouse transient receptor potential melastatin 2 (TRPM2) isoform 7 attenuates full‐length mouse TRPM2 activity through reductions in its expression by targeting it to ER‐associated d	1
VCP relocalization limits mitochondrial activity, GSH depletion and ferroptosis during starvation in PC3 prostate cancer cells	1
The PKM2 inhibitor shikonin enhances piceatannol‐induced apoptosis of glyoxalase I‐dependent cancer cells	1
Fatty acid preference for beta‐oxidation in mitochondria of murine cultured astrocytes	1
Issue Information	1
The cell type‐specific ER membrane protein UGS148 is not essential in mice	1
Swimming Into Future Breakthroughs From Kyoto, Japan: Report of the 18th International Zebrafish Conference (IZFC2024)	1
Post‐translational modifications of proteins associated with yeast peroxisome membrane: An essential mode of regulatory mechanism	1
BACH1 regulates erythrophagocytosis and iron‐recycling in β‐thalassemia	1
Identification of genes contributing to attenuation of rat model of galactose‐induced cataract by pyruvate	1
Loss of Caenorhabditis elegans homologue of human MOB4 compromises life span, health life span and thermotolerance	1
Brain‐derived neurotrophic factor (BDNF) downregulates mRNA levels of suppressor of cancer cell invasion (SCAI) variants in cortical neurons	1
Characterization of mouse embryonic fibroblasts derived from Rassf6 knockout mice shows the implication of Rassf6 in the regulation of NF‐κB signaling	1
Reconstruction of artificial nuclei with nuclear import activity in living mouse oocytes	1
N‐terminal Ago‐binding domain of GW182 contains a tryptophan‐rich region that confer binding to the CCR4–NOT complex	1
GPR56 C‐terminal fragment mediates signal received by N‐terminal fragment of another adhesion GPCR Latrophilin1 in neurons	1
The HAT Inhibitor ISOX‐DUAL Diminishes Ischemic Areas in a Mouse Model of Oxygen‐Induced Retinopathy	1
Rapalog‐induced cell adhesion molecule inhibits mesoderm migration in Xenopus embryos by increasing frequency of adhesion to the ectoderm	1
Transcriptomic Regulation by Astrocytic m6A Methylation in the mPFC	1
RNA–DNA hybrids on protein coding genes are stabilized by loss of RNase H and are associated with DNA damages during S‐phase in fission yeast	1
	1
Identification ofksg1mutation showing long‐lived phenotype in fission yeast	1
Quick and affordable DNA cloning by reconstitution of Seamless Ligation Cloning Extract using defined factors	1
Serine‐rich domain of RNPS1 functions in activation of alternative splicing	1
Issue Information	1
The joy of the 11th International Fission Yeast Meeting in Hiroshima (POMBE2023 Hiroshima) after a long wait due to the COVID‐19 pandemic	1
Interferon‐Dependent Expression of the Human STAT1 Gene Requires a Distal Regulatory Region Located Approximately 6 kb Upstream for Its Autoregulatory System	1
Validity of the cell‐extracted proteome as a substrate pool for exploring phosphorylation motifs of kinases	1
Issue Information	1
L3MBTL2 maintains MYCN‐amplified neuroblastoma cell proliferation through silencing NRIP3 and BRME1 genes	1

Rcn1, the fission yeast homolog of human DSCR1, regulates arsenite tolerance independently from calcineurin	1
	1
Identification of responsible amino acid residues in staphylococcal superantigen‐like 12 for the activation of mast cells	1
	1
DHX36 maintains genomic integrity by unwinding G‐quadruplexes	1
Subacute exposure to bisphenol F diglycidyl‐ether induces chronic dermatitis characterized by psoriasis‐like skin inflammation in mice	1
The Impact of the DNA Topoisomerase IIβ C‐Terminal Region on the Selective Degradation Induced by ICRF‐193 Treatment	1
Capsaicin modulates TRPV1, induces β‐defensin expression, and regulates NF‐κB in oral senescent cells and a murine model	1
Issue Information	1
Rapamycin Abrogates Aggregation of Human α‐Synuclein Expressed in Fission Yeast via an Autophagy‐Independent Mechanism	1
Absence of ULK1 decreases AMPK activity in the kidney, leading to chronic kidney disease progression	1
Issue Information	1
	1
Issue Information	1
Gene trapping reveals a new transcriptionally active genome element: The chromosome‐specific clustered trap region	0
Structural basis of Irgb6 inactivation by Toxoplasma gondii through the phosphorylation of switch I	0
Defects in the H3t Gene Cause an Increase in Leydig Cells With Impaired Spermatogenesis in Mice	0
Corrigendum	0
Issue Information	0
Elimination of physiological senescent cutaneous cells in a novel p16‐dependent senolytic mouse model impacts lipid metabolism in skin aging	0
The 36th International Mammalian Genome Conference: A scientific gathering under the cherry blossoms in Tsukuba	0
Issue Information	0
Roles of the second messenger c‐di‐GMP in bacteria: Focusing on the topics of flagellar regulation and Vibrio spp.	0
Issue Information	0
TBK1 inhibitors enhance transfection efficiency by suppressing p62/SQSTM1 phosphorylation	0
14–3‐3γ prevents centrosome duplication by inhibiting NPM1 function	0
SET‐NUP214 and MLL cooperatively regulate the promoter activity of the HoxA10 gene	0
Meflin/ISLR is a marker of adipose stem and progenitor cells in mice and humans that suppresses white adipose tissue remodeling and fibrosis	0
Regulation of constant cell elongation and Sfm pili synthesis in Escherichia coli via two active forms of FimZ orphan response regulator	0
The interaction between the import carrier Hikeshi and HSP70 is modulated by heat, facilitating the nuclear import of HSP70 under heat stress conditions	0
CD271 promotes proliferation and migration in bladder cancer	0
Aging‐associated reduction of chromosomal histones in mammalian oocytes	0
Microtubule inhibitors identified through nonbiased screening enhance DNA transfection efficiency by delaying p62‐dependent ubiquitin recruitment	0
	0
An Attention‐Based Deep Neural Network Model to Detect Cis‐Regulatory Elements at the Single‐Cell Level From Multi‐Omics Data	0
	0
Production of therapeutic iduronate‐2‐sulfatase enzyme with a novel single‐stranded RNA virus vector	0
Isolation of planarian viable cells using fluorescence‐activated cell sorting for advancing single‐cell transcriptome analysis	0
Revisiting the gene mutations and protein profile of WT 9‐12: An autosomal dominant polycystic kidney disease cell line	0
ETS‐dependent enhancers for endothelial‐specific expression of serum/glucocorticoid‐regulated kinase 1 during mouse embryo development	0
Lumicrine signaling: Extracellular regulation of sperm maturation in the male reproductive tract lumen	0
Unpaired nucleotides on the stem of microRNA precursor are important for precise cleavage by Dicer‐like 1 in Arabidopsis	0
Search for putative gene regulatory motifs in CAHS3, linked to anhydrobiosis in a tardigrade Ramazzottius varieornatus, in vivo and in silico	0
Staphylococcal superantigen‐like protein 3 triggers murine mast cell adhesion by binding to CD43 and augments mast cell activation	0
Meta‐analysis of gonadal transcriptome provides novel insights into sex change mechanism across protogynous fishes	0
RAD18‐ and BRCA1‐dependent pathways promote cellular tolerance to the nucleoside analog ganciclovir	0
Sonic hedgehog expands neural stem cells in the neocortical region leading to an expanded and wrinkled neocortical surface	0
Physcomitrium patens pentatricopeptide repeat protein PpPPR_32 is involved in the accumulation of psaC mRNA encoding the iron sulfur protein of photosystem I	0
The role of Zfp352 in the regulation of transient expression of 2‐cell specific genes in mouse embryonic stem cells	0
Integrated conjugal plasmid pLS20 in the Bacillus subtilis genome produced 850‐kbp circular subgenomes transmissible to another B. subtilis	0
Improvement of Targeting Efficiency by Promoter Replacement of Markers in Integration Vectors	0
Domain analysis of Drosophila Blimp‐1 reveals the importance of its repression function and instability in determining pupation timing	0
Left–right Myosin‐Is, Myosin1C, and Myosin1D exhibit distinct single molecule behaviors on the plasma membrane of Drosophila macrophages	0
Ubiquitin proteasome system in circadian rhythm and sleep homeostasis: Lessons from Drosophila	0
Insertion sequence excision is enhanced by a protein that catalyzes branch migration and promotes microhomology‐mediated end joining	0
Importin α2 association with chromatin: Direct DNA binding via a novel DNA‐binding domain	0
Role of Wnt5b‐Ror1 signaling in the proliferation of pancreatic ductal adenocarcinoma cells	0
	0
HOXB7 induces STAT3‐mediated transformation and lung metastasis in immortalized mammary gland NMuMG cells	0
Potential Role of Trap Clone Accumulation Areas (TCAAs) in Sustaining Pluripotency in Mouse Embryonic Stem Cells	0
Lineage tracing identifies in vitro microglia‐to‐neuron conversion by NeuroD1 expression	0
Chromosome‐dependent aneuploid formation in Spo11‐less meiosis	0
Isoliquiritigenin inhibits NLRP3 inflammasome activation with CAPS mutations by suppressing caspase‐1 activation and mutated NLRP3 aggregation	0
The hibernation promoting factor of Betaproteobacteria Comamonas testosteroni cannot induce 100S ribosome formation but stabilizes 70S ribosomal particles	0
Transcriptional features of low‐grade neuroepithelial tumors with the BRAF V600E mutation associated with epileptogenicity	0
Yeast Tor complex 1 phosphorylates eIF4E‐binding protein, Caf20	0
Histone variant H2A.Z plays multiple roles in the maintenance of heterochromatin integrity	0
Delineation of biliary epithelial cell dynamics in maternal liver during pregnancy	0
Identification and characterization of novel proteins associated with CHD4	0
Issue Information	0
Cathepsin L prevents the accumulation of alpha‐synuclein fibrils in the cell	0
Genetic inhibition of collapsin response mediator protein‐2 phosphorylation ameliorates retinal ganglion cell death in normal‐tension glaucoma models	0
Roles of Pbp1, Mkt1, and Dhh1 in the regulation of gene expression in the medium containing non‐fermentative carbon sources	0
	0
Improved anti‐solid tumor response by humanized anti‐podoplanin chimeric antigen receptor transduced human cytotoxic T cells in an animal model	0
Single‐shot quantitative phase imaging as an extension of differential interference contrast microscopy	0
Glucolipids and lipoteichoic acids affect the activity of SigI, an alternative sigma factor, and WalKR, an essential two‐component system, in Bacillus subtilis	0
Visualizing looping of two endogenous genomic loci using synthetic zinc‐finger proteins with anti‐FLAG and anti‐HA frankenbodies in living cells	0
The Protein Kinase aPKC as Well as the Small GTPases RhoA and Cdc42 Regulates Neutrophil Chemotaxis Partly by Recruiting the ROCK Kinase to the Leading Edge	0
Breaking self‐regulation of Regnase‐1 promotes its own protein expression	0
Switching defective/sucrose non‐fermenting chromatin remodeling complex coordinates meiotic gene activation via promoter remodeling and Meiosin activation in female germline	0
The cytosolic lncRNAdutA affects STATa signaling and developmental commitment in Dictyostelium	0
Promoter characterization of relZ‐bifunctional (pp)pGpp synthetase in mycobacteria	0
Issue Information	0
The anti‐inflammatory effect of metformin: The molecular targets	0
The impact of SETBP1 mutations in neurological diseases and cancer	0
Heat shock‐induced heme oxygenase‐1 expression in a mouse hepatoma cell line is dependent on HSF1 and modified by NRF2 and BACH1	0
Advantages of Mutant Generation by Genome Rearrangements of Non‐Conventional Yeast via Direct Nuclease Transfection	0
Fission yeast Ish1 and Les1 interact with each other in the lumen of the nuclear envelope	0
Let's enjoy the heated “Debate Forum” (Gekiron Colosseo) at Makuhari Messe: A report of the 45th Annual Meeting of the Molecular Biology Society of Japan (MBSJ2022)	0
The HMG‐box module in FACT is critical for suppressing epigenetic variegation of heterochromatin in fission yeast	0
Possibilities of skin coat color‐dependent risks and risk factors of squamous cell carcinoma and deafness of domestic cats inferred via RNA‐seq data	0
Issue Information	0
Effects of lipoprotein nanoparticles' composition and size on their internalization in plant and mammalian cells	0
	0