OOIR: Observatory of International Research

Papers

(The TQCC of Genes to Cells is 2. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-06-01 to 2025-06-01.)

Article	Citations
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HIF1α Plays a Crucial Role in the Development of TFE3–Rearranged Renal Cell Carcinoma by Orchestrating a Metabolic Shift Toward Fatty Acid Synthesis	24
Correction to “The Protein Kinase aPKC as Well as the Small GTPases RhoA and Cdc42 Regulates Neutrophil Chemotaxis Partly by Recruiting the ROCK Kinase to the Leading	19
Dynamics of actomyosin filaments in the contractile ring revealed by ultrastructural analysis	17
GTP‐dependent regulation of heterochromatin fluctuations at subtelomeric regions in Saccharomyces cerevisiae	16
DNMT1 can induce primary germ layer differentiation through de novo DNA methylation	15
A novel transcription factor Sdr1 involving sulfur depletion response in fission yeast	15
Neonatal Fc receptor is a functional receptor for classical human astrovirus	13
Histone H3.3 chaperone HIRA renders stress‐responsive genes poised for prospective lethal stresses in acquired tolerance	13
Luciferase‐based quantification of membrane fusion induced by SARS‐CoV‐2 S protein	12
A simple, rapid, and efficient method for generating multigene‐knockout culture cells by the CRISPR/Cas9 system	11
The 33rd International Conference on Arabidopsis Research (ICAR2023)	11
A Transition From Interindividual Uniformity to Diversity in Appearance and Transcriptional Features at Midlife in Caenorhabditis elegans	10
CdsA, a CDP‐diacylglycerol synthase involved in phospholipid and glycolipid MPIase biosynthesis, possesses multiple initiation codons	10
Cellular and molecular mechanisms of asymmetric stem cell division in tissue homeostasis	10
“The 10th International MDM2 Workshop”: Opening up new avenues for MDM2 and p53 research, the First International MDM2 Workshop in Asia	10
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Differential effects of the formin inhibitor SMIFH2 on contractility and Ca²⁺ handling in frog and mouse cardiomyocytes	8
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The HAT Inhibitor ISOX‐DUAL Diminishes Ischemic Areas in a Mouse Model of Oxygen‐Induced Retinopathy	8
Identification ofksg1mutation showing long‐lived phenotype in fission yeast	7

The iron chelator deferriferrichrysin induces paraptosis via extracellular signal‐related kinase activation in cancer cells	7
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N‐(3,4‐dimethoxyphenethyl)‐6‐methyl‐2,3,4,9‐tetrahydro‐1H‐carbazol‐1‐amine inhibits bladder cancer progression by suppressing YAP1/TAZ	7
Daidara: A gigantic Gypsy LTR retrotransposon lineage in the springtail Allacma fusca genome	7
Maternal epigenetic factors in embryonic and postnatal development	6
BACH1 regulates erythrophagocytosis and iron‐recycling in β‐thalassemia	6
Interferon‐Dependent Expression of the Human STAT1 Gene Requires a Distal Regulatory Region Located Approximately 6 kb Upstream for Its Autoregulatory System	6
ATP2B4 is an essential gene for epidermal growth factor‐induced macropinocytosis in A431 cells	6
Loss of Caenorhabditis elegans homologue of human MOB4 compromises life span, health life span and thermotolerance	6
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T‐cell receptor repertoire analysis of CD4‐positive T cells from blood and an affected organ in an autoimmune mouse model	6
N‐terminal Ago‐binding domain of GW182 contains a tryptophan‐rich region that confer binding to the CCR4–NOT complex	6
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Brain‐derived neurotrophic factor (BDNF) downregulates mRNA levels of suppressor of cancer cell invasion (SCAI) variants in cortical neurons	6
Necdin: A purposive integrator of molecular interaction networks for mammalian neuron vitality	5
Pathogen challenge in Arabidopsis cotyledons induces enhanced disease resistance at newly formed rosette leaves via sustained upregulation of WRKY70	5
Author Index	5
Mrc1^Claspin is essential for heterochromatin maintenance in Schizosaccharomyces pombe	5
The scaffold protein IQGAP1 promotes reorientation of epithelial cell polarity at the two‐cell stage for cystogenesis	5
Identification of genes contributing to attenuation of rat model of galactose‐induced cataract by pyruvate	5
Evaluation of repair activity by quantification of ribonucleotides in the genome	5
Megakaryocyte maturation involves activation of the adaptive unfolded protein response	5
Notch signaling pathway suppresses mRNA expression of hexokinase 2 under nutrient‐poor conditions in U87‐MG glioma cells	5
Squamous cell carcinoma‐derived G‐CSF promotes tumor growth and metastasis in mice through neutrophil recruitment and tumor cell proliferation, associated with poor prognosis of the patient	5
WDR74‐Mediated Ribosome Biogenesis and Proteome Dynamics During Mouse Preimplantation Development	5
Effect of volatile fatty acids on adipocyte differentiation in bovine dedifferentiated fat (DFAT) cells in vitro	5
Elimination of physiological senescent cutaneous cells in a novel p16‐dependent senolytic mouse model impacts lipid metabolism in skin aging	4
Glucolipids and lipoteichoic acids affect the activity of SigI, an alternative sigma factor, and WalKR, an essential two‐component system, in Bacillus subtilis	4
Defects in the H3t Gene Cause an Increase in Leydig Cells With Impaired Spermatogenesis in Mice	4
Importin α2 association with chromatin: Direct DNA binding via a novel DNA‐binding domain	4
Protein degradation by a component of the chaperonin‐linked protease ClpP	4
Isolation of planarian viable cells using fluorescence‐activated cell sorting for advancing single‐cell transcriptome analysis	4
ETS‐dependent enhancers for endothelial‐specific expression of serum/glucocorticoid‐regulated kinase 1 during mouse embryo development	4
Visualizing looping of two endogenous genomic loci using synthetic zinc‐finger proteins with anti‐FLAG and anti‐HA frankenbodies in living cells	4
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Microtubule inhibitors identified through nonbiased screening enhance DNA transfection efficiency by delaying p62‐dependent ubiquitin recruitment	4
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XRCC1 counteracts poly(ADP ribose)polymerase (PARP) poisons, olaparib and talazoparib, and a clinical alkylating agent, temozolomide, by promoting the removal of trapped PARP1 fr	4
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Multiple pathways and independent functional pools in insulin granule exocytosis	4
Fission yeast Ish1 and Les1 interact with each other in the lumen of the nuclear envelope	4
Bcat1 is controlled by Tsc2/mTORC1 pathway at expression levels and its deficiency together with Bcat2 inactivation suppresses the growth of a Tsc2^−/− tumor cel	4
Image Analysis Characterizes Phenotypic Variation in the Growth of Mushroom‐Forming Fungus Schizophyllum commune	4
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Lumicrine signaling: Extracellular regulation of sperm maturation in the male reproductive tract lumen	4
Regulation of Gut Starvation Responses Through DrosophilaNP3253 Neurons	4
Blockade of the interaction between BMP9 and endoglin on erythroid progenitors promotes erythropoiesis in mice	4
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Meeting report: AT workshop 2023—A platform for discussing cutting‐edge science in DNA damage signaling, repair, and human disorders	3
Glioma cells remotely promote erythropoiesis as a self‐expanding strategy of cancer stem cells	3
Swimming Into Future Breakthroughs From Kyoto, Japan: Report of the 18th International Zebrafish Conference (IZFC2024)	3
Epithelial miR‐215 negatively modulates Th17‐dominant inflammation by inhibiting CXCL12 production in the small intestine	3
Severe ethanol stress inhibits yeast proteasome activity at moderate temperatures but not at low temperatures	3
Chromosomal rearrangements associated with SMC5/6 deficiency in DNA replication	3
Pkd2, mutations linking to autosomal dominant polycystic kidney disease, localizes to the endoplasmic reticulum and regulates calcium signaling in fission yeast	3
ZomB is essential for chemotaxis of Vibrio alginolyticus by the rotational direction control of the polar flagellar motor	3
Correction to ‘The role of transcriptional coactivator TRAP220 in myelomonocytic differentiation’	3
Generation of Odorant Receptor‐QF2 Knock‐In Drivers for Improved Analysis of Olfactory Circuits in Drosophila	3
The Depletion of TRAIP Results in the Retention of PCNA on Chromatin During Mitosis Leads to Inhibiting DNA Replication Initiation	3
The 6th international cell senescence association conference	3
Rapamycin Abrogates Aggregation of Human α‐Synuclein Expressed in Fission Yeast via an Autophagy‐Independent Mechanism	3
Corrigendum	3
Growth and division mode plasticity is dependent on cell density in marine‐derived black yeasts	3
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Lineage tracing using Wnt2b‐2A‐CreERT2 knock‐in mice reveals the contributions of Wnt2b‐expressing cells to novel subpopulations of mesothelial/epicardial cell lineages during mouse deve	3
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The cell type‐specific ER membrane protein UGS148 is not essential in mice	3
Absence of ULK1 decreases AMPK activity in the kidney, leading to chronic kidney disease progression	3
The structure–function analysis of Obg‐like GTPase proteins along the evolutionary tree from bacteria to humans	3
Long‐term sorbitol consumption affects the hippocampus and alters cognitive function in aged mice	3
INT6/eIF3e represses E‐cadherin expression through HIF2α in lung carcinoma A549 cells	3
The histone H3K36 demethylase Fbxl11 plays pivotal roles in the development of retinal late‐born cell types	2
Improved anti‐solid tumor response by humanized anti‐podoplanin chimeric antigen receptor transduced human cytotoxic T cells in an animal model	2
Cryo‐EM Structures of Native Chromatin Units From Human Cells	2
GM‐CSF‐producing CCR2⁺CCR6⁺ Th17 cells are pathogenic in dextran sodium sulfate‐induced colitis model in mice	2
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Identification and characterization of novel proteins associated with CHD4	2
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CD271 promotes proliferation and migration in bladder cancer	2
Extracellular α‐synuclein impairs sphingosine 1‐phosphate receptor type 3 (S1PR3)‐regulated lysosomal delivery of cathepsin D in HeLa cells	2
Advantages of Mutant Generation by Genome Rearrangements of Non‐Conventional Yeast via Direct Nuclease Transfection	2
Lineage tracing identifies in vitro microglia‐to‐neuron conversion by NeuroD1 expression	2
Red light‐regulated interaction of Per‐Arnt‐Sim histidine kinases with partner histidine‐containing phosphotransfer proteins in Physcomitrium patens	2
Loss of a single Zn finger, but not that of two Zn fingers, of GATA3 drives skin inflammation	2
CD41⁺ extracellular vesicles produced by avian thrombocytes contain microRNAs	2
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Biochemical propensity mapping for structural and functional anatomy of importin α IBB domain	2
Mapping of the regions implicated in nuclear localization of multi‐functional DNA repair endonuclease XPF‐ERCC1	2
Regulation of constant cell elongation and Sfm pili synthesis in Escherichia coli via two active forms of FimZ orphan response regulator	2
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Search for putative gene regulatory motifs in CAHS3, linked to anhydrobiosis in a tardigrade Ramazzottius varieornatus, in vivo and in silico	2
The interaction between the import carrier Hikeshi and HSP70 is modulated by heat, facilitating the nuclear import of HSP70 under heat stress conditions	2
Characteristics of Global Methylation Changes in F1 Mice Sperm DNA Induced by Gestational Arsenic Exposure Are Re‐Established in F2 Somatic Cells but Not in F2	2
Overexpression of JNK‐associated leucine zipper protein induces chromosomal instability through interaction with dynein light intermediate chain 1	2
Premature gray hair development in the interbrow region owing to the loss of maxillary first molars in young mice	2
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Ectopic expression of matrix metalloproteinases and filopodia extension via JNK activation are involved in the invasion of blood tumor cells in Drosophila mxc mutant	2
Turnover of EDEM1, an ERAD‐enhancing factor, is mediated by multiple degradation routes	2
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Analysis of the responsiveness to antiandrogens in multiple breast cancer cell lines	2
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Egg components reverse the atrophy induced by injury in skeletal muscles	2
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Interleukin‐3‐dependent potentiation of IgE responsiveness in mouse basophils	2
Isoliquiritigenin inhibits NLRP3 inflammasome activation with CAPS mutations by suppressing caspase‐1 activation and mutated NLRP3 aggregation	2
The hibernation promoting factor of Betaproteobacteria Comamonas testosteroni cannot induce 100S ribosome formation but stabilizes 70S ribosomal particles	2
Iron‐Dependent JMJD1A‐Mediated Demethylation of H3K9me2 Regulates Gene Expression During Adipogenesis in a Spatial Genome Organization‐Dependent Manner	2
Dilp8 and its candidate receptor, Drl, are involved in the transdetermination of the Drosophila imaginal disc	2
Generation of Monosomy 21q Human iPS Cells by CRISPR/Cas9‐Mediated Interstitial Megabase Deletion	2
Activation of Evolutionarily Young Endogenous Retroviruses Is Implicated in COVID‐19 Immunopathology	2
Mouse transient receptor potential melastatin 2 (TRPM2) isoform 7 attenuates full‐length mouse TRPM2 activity through reductions in its expression by targeting it to ER‐associated d	2