OOIR: Observatory of International Research

Papers

(The TQCC of Genes to Cells is 3. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-05-01 to 2024-05-01.)

Article	Citations
m⁶A demethylase ALKBH5 promotes proliferation of esophageal squamous cell carcinoma associated with poor prognosis	35
Histamine and histidine decarboxylase: Immunomodulatory functions and regulatory mechanisms	27
Efficient and multiplexable genome editing using Platinum TALENs in oleaginous microalga, Nannochloropsis oceanica NIES‐2145	26
The role of eutherian‐specific RTL1 in the nervous system and its implications for the Kagami‐Ogata and Temple syndromes	22
An ALS‐associated KIF5A mutant forms oligomers and aggregates and induces neuronal toxicity	21
YkgM and YkgO maintain translation by replacing their paralogs, zinc‐binding ribosomal proteins L31 and L36, with identical activities	15
Chromatin remodeling in replication‐uncoupled maintenance DNA methylation and chromosome stability: Insights from ICF syndrome studies	15
Visualizing looping of two endogenous genomic loci using synthetic zinc‐finger proteins with anti‐FLAG and anti‐HA frankenbodies in living cells	15
XRCC1 counteracts poly(ADP ribose)polymerase (PARP) poisons, olaparib and talazoparib, and a clinical alkylating agent, temozolomide, by promoting the removal of trapped PARP1 fr	14
RNA polymerase II condensate formation and association with Cajal and histone locus bodies in living human cells	12
Improved anti‐solid tumor response by humanized anti‐podoplanin chimeric antigen receptor transduced human cytotoxic T cells in an animal model	12
Divergence of Drosophila species: Longevity and reproduction under different nutrient balances	12
Meflin defines mesenchymal stem cells and/or their early progenitors with multilineage differentiation capacity	11
MiR‐382‐5p suppresses M1 macrophage polarization and inflammatory response in response to bronchopulmonary dysplasia through targeting CDK8: Involving inhibition of STAT1 pathway	11
Sulfur depletion induces autophagy through Ecl1 family genes in fission yeast	11
Overexpression of neural miRNAs miR‐9/9* and miR‐124 suppresses differentiation to Müller glia and promotes differentiation to neurons in mouse retina in vivo	11
Human SIRT2 and SIRT3 deacetylases function in DNA homologous recombinational repair	10
Sonic hedgehog signals hinder the transcriptional network necessary for pancreatic endoderm formation from human embryonic stem cells	10
(Pro)renin receptor/ATP6AP2 is required for autophagy and regulates proliferation in lung adenocarcinoma cells	10
VCP relocalization limits mitochondrial activity, GSH depletion and ferroptosis during starvation in PC3 prostate cancer cells	10
miR‐29c‐3p regulates TET2 expression and inhibits autophagy process in Parkinson's disease models	10
Sonic hedgehog expands neural stem cells in the neocortical region leading to an expanded and wrinkled neocortical surface	9
G‐quadruplex‐forming nucleic acids interact with splicing factor 3B subunit 2 and suppress innate immune gene expression	9
Identification and characterization of the antigen recognized by the germ cell mAb TRA98 using a human comprehensive wet protein array	9
The N‐terminal and C‐terminal halves of histone H2A.Z independently function in nucleosome positioning and stability	9

Extension of chronological lifespan in Schizosaccharomyces pombe	9
A simple and practical workflow for genotyping of CRISPR–Cas9‐based knockout phenotypes using multiplexed amplicon sequencing	9
Development of a portable reverse transcription loop‐mediated isothermal amplification system to detect the E1 region of Chikungunya virus in a cost‐effective manner	9
polished rice mediates ecdysone‐dependent control of Drosophila embryonic organogenesis	8
Amyotrophic lateral sclerosis‐associated Vap33 is required for maintaining neuronal dendrite morphology and organelle distribution in Drosophila	8
Roles of the second messenger c‐di‐GMP in bacteria: Focusing on the topics of flagellar regulation and Vibrio spp.	8
Mulberry fruit extract alleviates the intracellular amyloid‐β oligomer‐induced cognitive disturbance and oxidative stress in Alzheimer’s disease model mice	8
Chromosome counting in the mouse zygote using low‐invasive super‐resolution live‐cell imaging	8
14–3‐3γ prevents centrosome duplication by inhibiting NPM1 function	7
TDP2 suppresses genomic instability induced by androgens in the epithelial cells of prostate glands	7
Deltex positively regulates Toll signaling in a JNK independent manner in Drosophila	7
Protease inhibitory activity of secretory leukocyte protease inhibitor ameliorates murine experimental colitis by protecting the intestinal epithelial barrier	7
Homeodomain protein DLX4 facilitates nasopharyngeal carcinoma progression via up‐regulation of YB‐1	7
Necdin: A purposive integrator of molecular interaction networks for mammalian neuron vitality	7
Growth and division mode plasticity is dependent on cell density in marine‐derived black yeasts	7
The intrinsically disordered N‐terminal region of mouse DNA polymerase alpha mediates its interaction with POT1a/b at telomeres	6
Expression of Cds4/5 of Arabidopsis chloroplasts in E. coli reveals the membrane topology of the C‐terminal region of CDP‐diacylglycerol synthases	6
UV‐induced DNA damage disrupts the coordination between replication initiation, elongation and completion	6
Ubiquitination‐dependent and ‐independent repression of target genes by SETDB1 reveal a context‐dependent role for its methyltransferase activity during adipogenesis	6
Production of therapeutic iduronate‐2‐sulfatase enzyme with a novel single‐stranded RNA virus vector	6
Importin α2 association with chromatin: Direct DNA binding via a novel DNA‐binding domain	6
The structure of POMGNT2 provides new insights into the mechanism to determine the functional O‐mannosylation site on α‐dystroglycan	6
SET‐NUP214 and MLL cooperatively regulate the promoter activity of the HoxA10 gene	6
Transcriptome analysis of gene expression changes upon enzymatic dissociation in skeletal myoblasts	6
Characterization of phalloidin‐negative nuclear actin filaments in U2OS cells expressing cytoplasmic actin‐EGFP	6
Polyvinyl alcohol scaffolds and supplementation support 3D and sphere culturing of human cancer cell lines by reducing apoptosis and promoting cellular proliferation	6
Histone variant H2A.Z plays multiple roles in the maintenance of heterochromatin integrity	5
Over‐expression of Nicotinamide phosphoribosyltransferase in mouse cells confers protective effect against oxidative and ER stress‐induced premature senescence	5
Planar cell polarity protein Vangl2 and its interacting protein Ap2m1 regulate dendritic branching in cortical neurons	5
Glioma cells remotely promote erythropoiesis as a self‐expanding strategy of cancer stem cells	5
Elevated CO₂ promotes satellite stomata production in young cotyledons of Arabidopsis thaliana	5
Dynein intermediate chains DYCI‐1 and WDR‐60 have specific functions in Caenorhabditis elegans	5
Cytoplasmic granule formation by FUS‐R495X is attributable to arginine methylation in all Gly‐rich, RGG1 and RGG2 domains	5
Identification of ksg1 mutation showing long‐lived phenotype in fission yeast	5
Increased soluble (pro)renin receptor protein by autophagy inhibition in cultured cancer cells	5
ISG20 and nuclear exosome promote destabilization of nascent transcripts for spliceosomal U snRNAs and U1 variants	5
Down‐regulation of dual‐specificity phosphatase 6, a negative regulator of oncogenic ERK signaling, by ACA‐28 induces apoptosis in NIH/3T3 cells overexpressing HER2/ErbB2	5
Development of novel potent ligands for GPR85, an orphan G protein‐coupled receptor expressed in the brain	5
Vrk2 deficiency elicits aggressive behavior in female zebrafish	5
Pbp1 mediates the aberrant expression of genes involved in growth defect of ccr4∆ and pop2∆ mutants in yeast Saccharomyces cerevisiae	5
Post‐translational modifications of proteins associated with yeast peroxisome membrane: An essential mode of regulatory mechanism	4
GM‐CSF‐producing CCR2⁺CCR6⁺ Th17 cells are pathogenic in dextran sodium sulfate‐induced colitis model in mice	4
ETS‐dependent enhancers for endothelial‐specific expression of serum/glucocorticoid‐regulated kinase 1 during mouse embryo development	4
Effect of volatile fatty acids on adipocyte differentiation in bovine dedifferentiated fat (DFAT) cells in vitro	4
Drosophila telomere capping protein HOAP interacts with DSB sensor proteins Mre11 and Nbs	4
Formation of multiple flagella caused by a mutation of the flagellar rotor protein FliM in Vibrio alginolyticus	4
Enhancement of leukemia‐like phenotypes in Drosophila mxc mutant larvae due to activation of the RAS‐MAP kinase cascade possibly via down‐regulation of DE‐cadherin	4
The structure–function analysis of Obg‐like GTPase proteins along the evolutionary tree from bacteria to humans	4
Biochemical propensity mapping for structural and functional anatomy of importin α IBB domain	4
Single‐shot quantitative phase imaging as an extension of differential interference contrast microscopy	4

TAZ inhibits acinar cell differentiation but promotes immature ductal cell proliferation in adult mouse salivary glands	4
Evaluation of repair activity by quantification of ribonucleotides in the genome	4
SH3P2 suppresses osteoclast differentiation through restricting membrane localization of myosin 1E	4
The SUN1 splicing variants SUN1_888 and SUN1_916 differentially regulate nucleolar structure	4
Dorsal–lateral clock neurons modulate consolidation and maintenance of long‐term memory in Drosophila	4
ZomB is essential for chemotaxis of Vibrio alginolyticus by the rotational direction control of the polar flagellar motor	4
Fission yeast Ish1 and Les1 interact with each other in the lumen of the nuclear envelope	4
Periodic albinism of a widely used albino mutant of Xenopus laevis caused by deletion of two exons in the Hermansky–Pudlak syndrome type 4 gene	4
Potential involvement of DSCAML1 mutations in neurodevelopmental disorders	4
Horizontal transfer of domains in ssrA gene among Enterobacteriaceae	4
Rapid turnover of transcription factor Rim101 confirms a flexible adaptation mechanism against environmental stress in Saccharomyces cerevisiae	4
GATA2 participates in the recanalization of lymphatic vessels after surgical lymph node extirpation	3
Identification of CD56^dim subpopulation marked with high expression of GZMB/PRF1/PI‐9 in CD56⁺ interferon‐α‐induced dendritic cells	3
Establishment of a system for finding inhibitors of ε RNA binding with the HBV polymerase	3
Marsupial genome analysis suggests that satellite DNA formation from walb endogenous retrovirus is an event specific to the red‐necked wallaby	3
Lumicrine signaling: Extracellular regulation of sperm maturation in the male reproductive tract lumen	3
Local anesthetic lidocaine induces growth suppression of HeLa cells by decreasing and changing the cellular localization of the proliferation marker Ki‐67	3
Comprehensive lipidomics of lupus‐prone mice using LC–MS/MS identifies the reduction of palmitoylethanolamide that suppresses TLR9‐mediated inflammation	3
Mitochondrial dynamics and degradation in the oleaginous yeast Lipomyces starkeyi	3
Trimethylguanosine synthase 1 (Tgs1) is involved in Swi6/HP1‐independent siRNA production and establishment of heterochromatin in fission yeast	3
Genetic inhibition of collapsin response mediator protein‐2 phosphorylation ameliorates retinal ganglion cell death in normal‐tension glaucoma models	3
Enhanced Agrobacterium‐mediated transformation revealed attenuation of exogenous plasmid DNA installation in recipient bacteria by exonuclease VII and SbcCD	3
BAP1 depletion in human B‐lymphoblast cells affects the production of innate immune cytokines and chemokines	3
EGL‐4/PKG regulates the role of an interneuron in a chemotaxis circuit of C. elegans through mediating integration of sensory signals	3
The PAF1 complex cell autonomously promotes oogenesis in Caenorhabditis elegans	3
LincRNA‐p21 exon 1 expression correlates with Cdkn1a expression in vivo	3
The TIGD5 gene located in 8q24 and frequently amplified in ovarian cancers is a tumor suppressor	3