Journal of Applied Microbiology

Article	Citations
Withdrawn: Abundance, community structure and diversity of nitrifying bacterial enrichments from low and high saline brackishwater environments	285
Issue Information	250
Exploring Bacillus thuringiensis as a model for endospore adhesion and its potential to investigate adhesins in Pasteuria penetrans	154
Enhancement of Acinetobacter baumannii biofilm growth by cephem antibiotics via enrichment of protein and extracellular DNA in the biofilm matrices	128
Harnessing rhizobacteria to fulfil inter-linked nutrient dependency on soil and alleviate stresses in plants	122
Selection of Debaryomyces hansenii isolates as starters in meat products based on phenotypic virulence factors, tolerance to abiotic stress conditions and aroma generation	90
Epidemiology of major entero-pathogenic viruses and genetic characterization of Group A rotaviruses among children (≤5 years) with acute gastroenteritis in eastern India, 2018–2020	87
Host range and virulence diversity of Pectobacterium carotovorum subsp. brasiliense strain RDKLR infecting radish in India, and development of a LAMP-based diagnostics	84
Could Bacillus biofilms enhance the effectivity of biocontrol strategies in the phyllosphere?	79
A comparative study of in-vitro and in-silico anti-candidal activity and GC–MS profiles of snow mountain garlic vs. normal garlic	76
Effect of nutritional and environmental conditions on biofilm formation of avian pathogenic Escherichia coli	72
Functional fermented meat products with probiotics—A review	67
Issue Information	64
	59
	58
Effect of thermotherapy, Leifsonia xyli subsp. xyli titres, sugarcane genotype and diagnostic techniques on ratoon stunt control in Brazil	56
Antifungal activity of 2-chloro-N-phenylacetamide, docking and molecular dynamics studies against clinical isolates of Candida tropicalis and Candida parapsilosis	54
Antimicrobial resistance—Do we share more than companionship with our dogs?	54
Novel pulsed infrared radiation: Effect on microbial, chemical and sensory properties of saffron (Crocus sativus L.)	52
Metabolite profiling reveals overexpression of the global regulator, MoLAEA leads to increased synthesis of metabolites in Magnaporthe oryzae	51
Beneficial effects of fermented barley extracts on inflammatory status and gut microbiota in high-fat diet-induced obese rats	50
Probiotic properties of yeasts in traditional fermented foods and beverages	46
Fermentation of chickpea flour with selected lactic acid bacteria for improving its nutritional and functional properties	46
The potential of Bacillus subtilis and phosphorus in improving the growth of wheat under chromium stress	44
Metabolomic analysis of sheath blight disease of rice (Oryza sativa L.) induced by Rhizoctonia solani phytotoxin	42

A carvacrol-based product reduces Campylobacter jejuni load and alters microbiota composition in the caeca of chickens	42
A SARS-CoV-2 oral vaccine development strategy based on the attenuated Salmonella type III secretion system	42
Dose–response analysis of Bacillus thuringiensis HD-1 cry- spore reduction on surfaces using formaldehyde with pre-germination	39
The inactivation efficacy of plasma-activated acetic acid against Salmonella Typhimurium cells and biofilm	39
Whole-genome sequencing links Clostridium (Clostridioides) difficile in a single hospital to diverse environmental sources in the community	39
Analysis of bacterial diversity and genetic evolution of Lacticaseibacillus paracasei isolates in fermentation pit mud	38
Antimicrobial effects of automobile screen washes against Legionella pneumophila	37
Minding the matrix: The importance of inoculum suspensions on finger transfer efficiency of virus	37
Effect of different dosages of sodium butyrate and niacin on growth, faecal microbiota and Vitamin B metabolism in weaned piglets	37
The NDT80-like transcription factor CmNdt80a affects the conidial formation and germination, mycoparasitism, and cell wall integrity of Coniothyrium minitans	37
Container material dictates stability of bacteriophage suspensions: Light scattering and infectivity measurements reveal mechanisms of infectious titre decay	36
Comparison of bacterial diversity, root exudates and soil enzymatic activities in the rhizosphere of AVP1-transgenic and nontransgenic wheat (Triticum aestivum L.)	36
Rapid and visual detection of Staphylococcus aureus in milk using a recombinase polymerase amplification-lateral flow assay combined with immunomagnetic separation	35
Whole genome sequencing reveals antimicrobial resistance determinants (AMR genes) of Salmonella enterica recovered from raw chicken and ready-to-eat leaves imported into England between 2014 and 2019	33
A survey of fermentation parameters, bacterial community compositions and their metabolic pathways during the ensiling of sorghum	33
Evaluating the fermentation quality and bacterial community of high-moisture whole-plant quinoa silage ensiled with different additives	33
Special Issue ‘One Health meets Omics: The way forward to investigate zoonosis’	32
Characterization of oxaliplatin removal by multispecies bacterial populations in moving bed biofilm and suspended-biomass reactors	31
Layers, broiler chickens and their F1 cross develop distinctly different caecal microbial communities when hatched and reared together	31
Biocontrol potential of Burkholderia sp. BV6 against the rice blast fungus Magnaporthe oryzae	31
Purification and characterization of a robust thermostable protease isolated from Bacillus subtilis strain HR02 as an extremozyme	30
A methodological review on the characterization of microalgal biofilm and its extracellular polymeric substances	30
Antifungal potential of Azotobacter species and its metabolites against Fusarium verticillioides and biodegradation of fumonisin	30
Antibacterial activity and mechanism of ginger extract against Ralstonia solanacearum	29
A commercial SnF2 toothpaste formulation reduces simulated human plaque biofilm in a dynamic typodont model	29
The following articles for this Special Issue were published in different Issues	29
Identification of antibacterial metabolites produced by a marine bacterium Halobacillus marinus HMALI004	29
Differing kinetics of anti-spike protein IgGs and neutralizing antibodies against SARS-CoV-2 after Comirnaty (BNT162b2) immunization	29
RETRACTED: Guaiacol augments quorum quenching potential of ciprofloxacin against Pseudomonas aeruginosa	28
Effects of supplementing with Humulus scandens on the growth performance and gut microbiota in piglets	28
Genomic diversity, virulence and source of Campylobacter jejuni contamination in Irish poultry slaughterhouses by whole genome sequencing	28
A comparative genomics approach for identifying genetic factors in Escherichia coli isolates associated with bovine diseases	28
High-copy genome integration and stable production of p-coumaric acid via a POT1-mediated strategy in Saccharomyces cerevisiae	27
Heterologous expression of a cryptic gene cluster from a marine proteobacterium Thalassomonas actiniarum affords new lanthipeptides thalassomonasins A and B	27
Potential hazards associated with the consumption of Scombridae fish: Infection and toxicity from raw material and processing	27
Phytolectin conjugated positively charged fatty acid amide impairs virulence factors and inhibits cross-kingdom biofilm formation of Candida albicans and uropathogenic Escherichia coli	25
Predictive growth kinetic parameters and modelled probabilities of deoxynivalenol production by Fusarium graminearum on wheat during simulated storing conditions	25
Interactive relationship between Trp metabolites and gut microbiota: The impact on human pathology of disease	25
Anti-inflammatory potential of Lactobacillus reuteri LM1071 via eicosanoid regulation in LPS-stimulated RAW264.7 cells	24
Rapid detoxification of Jatropha curcas cake by fermentation with a combination of three microbial strains and characterization of their metabolic profiles	23
Identification of spoilage microflora in draught beer using culture-dependent methods	23
Distinct dynamics of Vibrio parahaemolyticus populations in two farming models	22
Bacteriophage-antibiotic combination therapy for multidrug-resistant Pseudomonas aeruginosa: In vitro synergy testing	22
Characterization of cinnamon essential oil and its application in Malva sylvestris seed mucilage edible coating to the enhancement of the microbiological, physicochemical and sensory properties of lam	22
Issue Information	21
Effects of probiotic Lactiplantibacillus plantarum IMC 510 supplementation on metabolic factors in otherwise healthy overweight and obese individuals	21
Identifying more targeted antimicrobials active against selected bacterial phytopathogens	21
Inhibitory effects of atmospheric dielectric barrier discharge plasma against Bacillus cereus and Staphylococcus aureus on Gwamegi (semi-dried Cololabis saira)	21
Assessment of humoral immune response to two mRNA SARS-CoV-2 vaccines (Moderna and Pfizer) in healthcare workers fully vaccinated with and without a history of previous infection	21
Imaging and plate counting to quantify the effect of an antimicrobial: A case study of a photo-activated chlorine dioxide treatment	21

Characterization of bacterial communities in Coregonus peled fillets during chilled storage and interactions between selected bacterial strains	21
Protective effects of Lacticaseibacillus rhamnosus Hao9 on dextran sulphate sodium-induced ulcerative colitis in mice	20
Oxidative lesions and post-treatment viability attenuation of listeria monocytogenes triggered by atmospheric non-thermal plasma	20
Redesigned pMAL expression vector for easy and fast purification of active native antimicrobial peptides	20
Genomic characterization of high-risk Escherichia coli and Enterobacter hormaechei clones recovered from a single tertiary-care hospital in Pakistan	20
Bacteriophages: A weapon against mixed-species biofilms in the food processing environment	20
Comparison of Monkeypox virus genomes from the 2017 Nigeria outbreak and the 2022 outbreak	20
Salmonella contamination and hazard analysis in a storage facility for feed materials in Japan	19
Characterization of nitrilases from Variovorax boronicumulans that functions in insecticide flonicamid degradation and β-cyano-L-alanine detoxification	19
Biovalorization of spent Konacha tea leaves via single-culture fermentation involving wine yeasts and lactic acid bacteria	19
Antistaphylococcal and antioxidant activities of bacteriocinogenic lactic acid bacteria and essential oil in goat coalho cheese	19
Bacterial levels and diversity in kitchen sponges and dishwashing brushes used by consumers	19
Norovirus attribution study: Detection of norovirus from the commercial food preparation environment in outbreak and non-outbreak premises	19
Antibacterial and antibiofilm activities of novel antimicrobial peptide DP7 against the periodontal pathogen Porphyromonas gingivalis	18
High-throughput assay for effect screening of amphotericin B and bioactive components on filamentous Candida albicans	18
The combination of hexanal and geraniol in sublethal concentrations synergistically inhibits quorum sensing in Pseudomonas fluorescens—In vitro and in silico approaches	18
Ceriporia lacerata HG2011 enhances P mobilization and wheat agronomic performance irrespective of P fertilization levels	18
PCR-based ORF typing of Klebsiella pneumoniae for rapid identification of global clones and transmission events	18
Algicidal interaction between Paenibacillus polymyxa MEZ6 and microalgae	18
Characterization of three novel DyP-type peroxidases from Streptomyces chartreusis NRRL 3882	18
Probiotic potential of GABA-producing lactobacilli isolated from Uruguayan artisanal cheese starter cultures	17
Infection and antibiotic treatment have prolonged effects on gut microbiota, muscle and hepatic fatty acids in rainbow trout (Oncorhynchus mykiss)	17
Taxonomic and functional diversity of Dendrobium officinale microbiome in Danxia habitat	17
Bacterial mandelic acid degradation pathway and its application in biotechnology	17
Ultrasound-assisted facile synthesis of Boron-Heck-coupled sclareol analogues as potential antibacterial agents against Staphylococcus aureus	17
Testing of candidate probiotics to prevent dental caries induced by Streptococcus mutans in a mouse model	17
Phenotypic characterization of the Hordeum bulbosum derived leaf rust resistance genes Rph22 and Rph26 in barley	16
Separating the chemical and microbial factors of oat harvested at two growth stages to determine the main factor on silage fermentation	16
Nanocarriers for combating biofilms: Advantages and challenges	16
Novel amikacin resistance genes identified from human gut microbiota by functional metagenomics	16
Evaluation of the pathogenicity of endophytic fungi isolated from spines of rattan (Calamus castaneus) against other plant hosts	16
Functional relevance and health benefits of soymilk fermented by lactic acid bacteria	16
Siderophore production in pseudomonas SP. strain SP3 enhances iron acquisition in apple rootstock	16
Evaluation of probiotic potential of autochthonous lactobacilli strains isolated from Zabuli yellow kashk, an Iranian dairy product	16
Nigella sativa oil extract: A natural novel specific conjugal transfer inhibitor of vancomycin resistance from vanA/B-resistant Enterococcus faecium to Staphylococcus aureus	15
A novel, magnetic bead-based extraction method for the isolation of antimicrobial resistance genes with a case study in river water in Malawi	15
Management of abiotic stresses by microbiome-based engineering of the rhizosphere	15
Genetic and phylogenetic characterization of Shiga toxin-producing Escherichia coli and enteropathogenic E. coli from livestock in Jiangsu by using whole-genome sequencing	15
Leaf endophytic microbiomes of different almond cultivars grafted to the same rootstock	15
A protocol for the cultivation and monitoring of ileal gut microbiota surrogates	15
Influence of blueberry tissue type, wounding and cultivar on susceptibility to infection by Neofusicoccum species	15
Estimation of the post-mortem interval by modelling the changes in oral bacterial diversity during decomposition	15
Bacillus sp. DU-106 ameliorates type 2 diabetes by modulating gut microbiota in high-fat-fed and streptozotocin-induced mice	15
Identification of NS5B resistance against SOFOSBUVIR in hepatitis C virus genotype 3a, naive and treated patients	15
Issue Information	15
Isolation and identification of flavonoid-producing endophytic fungi from Loranthus tanakae Franch. & Sav that exhibit antioxidant and antibacterial activities	15
An improved, simple and field-deployable CRISPR-Cas12a assay for the detection of SARS-CoV-2	15
Comparison of the risk of infection of human rotavirus and astrovirus according to fishing and swimming activities at Las Cañas beach, Uruguay	15
Transfer of Phi6 bacteriophage between human skin and surfaces common to consumer-facing environments	15
Isolation and identification of mucin-degrading bacteria originated from human faeces and their potential probiotic efficacy according to host–microbiome enterotype	14
Mechanistic assessment of tolerance to iron deficiency mediated by Trichoderma harzianum in soybean roots	14
Antimicrobial betalains	14
Incidence of biofilm formation among MRSA and MSSA clinical isolates from hospitalized patients in Israel	14
Spread of antimicrobial resistance genes via pig manure from organic and conventional farms in the presence or absence of antibiotic use	14
Investigation of fungal contamination in medicinal and edible Lycii Fructus through DNA metabarcoding	14
Heavy metal-induced selection and proliferation of antibiotic resistance: A review	14
Discrimination of Euglena gracilis strains Z and bacillaris by MALDI-TOF MS	14
The prevalence of Campylobacter spp., Listeria monocytogenes and Shiga toxin-producing Escherichia coli in Norwegian dairy cattle farms: A comparison between free stall and tie stall housing systems	14
Enhancement of antibacterial and growth-promoting effects of Paenibacillus polymyxa by optimizing its fermentation process	14
Metaprofiling of the bacterial community in sorghum silages inoculated with lactic acid bacteria	14
‘To be, or not to be’—The dilemma of ‘silent’ antimicrobial resistance genes in bacteria	14
Development and application of CRISPR-based genetic tools in Bacillus species and Bacillus phages	13
Anti-microbial efficacy, mechanisms and druggability evaluation of the natural flavonoids	13
Degradation of oxalic acid by Trichoderma afroharzianum and its correlation with cell wall degrading enzymes in antagonizing Botrytis cinerea	13
Issue Information	13
Natamycin as a safe food additive to control postharvest green mould and sour rot in citrus	13
Rapid phylogenetic analysis using open reading frame content patterns acquired by Oxford nanopore sequencing	13
Dual species dry surface biofilms; Bacillus species impact on Staphylococcus aureus survival and surface disinfection	13
	12
Evaluating the potential of Pediococcus pentosaceus as a biocontrol agent against tenuazonic acid–producing Alternaria alternata on livestock feeds	12
Virulence, antimicrobial susceptibility and phylogenetic analysis of Cronobacter sakazakii isolates of food origins from Jordan	12
Methicillin-resistant Staphylococcus aureus contamination of high-touched surfaces in a university campus	12
The following articles for this issue Special issue were published in different issues	12
Theaflavin and its derivatives exert antibacterial action against Bacillus coagulans through adsorption to cell surface phospholipids	12
Elucidating the interaction of rhizosphere bacteria and environmental factors in influencing active ingredient content of Lycium barbarum fruit in China	12
Isolation and characterization of competitive exclusion microorganisms from animal wastes–based composts against Listeria monocytogenes	12
Biosorption optimization of lead(II) and cadmium(II) ions by two novel nanosilica-immobilized fungal mutants	12
Biodeterioration of carbographic ribbon: Isolation, identification of causal agents and forensic implications	12
Simple and field amenable loop-mediated isothermal amplification-lateral flow dipstick assay for detection of west Nile virus in human clinical samples	12
Bacillus altitudinis HNH7 and Bacillus velezensis HNH9 promote plant growth through upregulation of growth-promoting genes in upland cotton	12

Improvement in desulfurization of dibenzothiophene and dibenzothiophene sulfone by Paenibacillus strains using immobilization or nanoparticle coating	12
Levilactobacillus brevis from carnivores can ameliorate hypercholesterolemia: In vitro and in vivo mechanistic evidence	11
Effective adsorption of perrhenate ions on the filamentous sheath-forming bacteria, Sphaerotilus montanus, Sphaerotilus natans and Thiothrix fructosivorans	11
Effects of temperature, pH and sodium chloride on antimicrobial activity of magnesium oxide nanoparticles against E. coli O157:H7	11
Metaphylactic antimicrobial effects on occurrences of antimicrobial resistance in Salmonella enterica, Escherichia coli and Enterococcus spp. measured longitudinally from feedlot arrival to harvest in	11
Enhancing the biodesulphurization capacity of Rhodococcus sp. FUM94 in a biphasic system through optimization of operational factors	11
Antimicrobial potential of culturable actinobacteria isolated from the Pacific oyster Crassostrea gigas (Bivalvia, Ostreidae)	11
Purification and characterization of cellulase produced by Novosphingobium sp. Cm1 and its waste hydrolysis efficiency and bio-stoning potential	11
Enterococcal biofilm—A nidus for antibiotic resistance transfer?	11
Analysis of hypervirulent Klebsiella pneumoniae and classic Klebsiella pneumoniae infections in a Chinese hospital	11
Pseudomonas fluorescens NK4 siderophore promotes plant growth and biocontrol in cucumber	11
Issue Information	11
Disinfection of an ambulance using a compact atmospheric plasma device	11
Intracellular trehalose accumulation via the Agt1 transporter promotes freeze–thaw tolerance in Saccharomyces cerevisiae	11
Effect of grape pomace from red cultivar 'Nero d’Avola' on the microbiological, physicochemical, phenolic profile and sensory aspects of ovine Vastedda-like stretched cheese	11
Optimization of the composition of a solid culture medium for Mycobacterium avium subsp. paratuberculosis using factorial design and response surface methodology	10
Difference responses of soil fungal communities to cattle and chicken manure composting application	10
Plant-associated endophytic fungi as potential bio-factories for extracellular enzymes: Progress, Challenges and Strain improvement with precision approaches	10
Nasal Staphylococcus aureus and S. pseudintermedius carriage in healthy dogs and cats: a systematic review of their antibiotic resistance, virulence and genetic lineages of zoonotic relevance	10
Water kefir: Factors affecting grain growth and health-promoting properties of the fermented beverage	10
A plant mannose-binding lectin and fluconazole: Key targets combination against Candida albicans	10
Corrigendum	10
Screening, characterization and growth of γ-aminobutyric acid-producing probiotic candidates from food origin under simulated colonic conditions	10
Mucormycosis: The hidden and forgotten disease	10
Development and evaluation of real-time recombinase polymerase amplification assay for rapid and sensitive detection of Vibro mimicus in human plasma samples	10
AaCaM is required for infection structure differentiation and secondary metabolites in pear fungal pathogen Alternaria alternata	10
Variation in glucose metabolism under acidified sodium nitrite mediated nitrosative stress in Saccharomyces cerevisiae	10
Multiplex PCR assay for correct identification of the fish pathogenic species of Edwardsiella genus reveals the presence of E. anguillarum in South America in strains previously characterized as E. ta	9
Transcriptome reveals BCAAs biosynthesis pathway is influenced by lovastatin and can act as a potential control target in Phytophthora sojae	9
Biosynthesis of γ-aminobutyric acid by lactic acid bacteria in surplus bread and its use in bread making	9
Assessing cross-laboratory performance for quantifying coliphage using EPA Method 1642	9
Potentiality of actinobacteria to combat against biotic and abiotic stresses in tea [Camellia sinensis (L) O. Kuntze]	9
Decontamination efficacy of common liquid disinfectants against non-spore-forming biological agents in soil matrices	9
Prevalence, genetic diversity, antibiotic resistance and biofilm formation of Acinetobacter baumannii isolated from urban environments	9
Pectinolytic arsenal of Colletotrichum lindemuthianum and other fungi with different lifestyles	9
Ecology and diversity of culturable fungal species associated with soybean seedling diseases in the Midwestern United States	9
Evaluating hop extract concentrations found in commercial beer to inhibit Streptococcus mutans biofilm formation	9
Clarification of large-volume bacterial cultures using a centrifuge-free protocol	9
Issue Information	9
LC-MS/MS quantitation of α-amylase/trypsin inhibitor CM3 and glutathione during wheat sourdough breadmaking	9
Changes in gut microbiota, metabolite SCFAs, and GPR43 expression in obese diabetic mice after sleeve gastrectomy	9
Correlation between metabolites of lactic acid bacteria isolated from dairy traditional fermented Tunisian products and antifungal and antioxidant activities	9
Water kefir grains vs. milk kefir grains: Physical, microbial and chemical comparison	9
Impact of benzalkonium chloride, benzethonium chloride and chloroxylenol on bacterial antimicrobial resistance	9
Synergistic denitrification and phosphorus removal performance of a biofilm-microflocculation system and its microbial community variations: A pilot-scale study for a wastewater treatment plant	9
Efficacy of EPA-registered disinfectants against two human norovirus surrogates and Clostridioides difficile endospores	9
Dynamic utilization of low-molecular-weight organic substrates across a microbial growth rate gradient	9
Antimicrobial evaluation of the Cynara cardunculus extract in Helicobacter pylori cells using mid-infrared spectroscopy and chemometric methods	9